Wall clock time and date at job start Mon Mar 30 2020 05:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50693 * 109.47363 * 2 1 4 4 S 1.69990 * 124.03077 * 273.23678 * 3 2 1 5 5 C 1.75779 * 93.22333 * 179.97438 * 4 3 2 6 6 C 1.39235 * 110.20984 * 359.97438 * 5 4 3 7 7 C 1.40666 * 119.28114 * 179.97438 * 6 5 4 8 8 C 1.37467 * 120.41720 * 0.02562 * 7 6 5 9 9 C 1.38573 * 120.31251 * 359.97438 * 8 7 6 10 10 C 1.38133 * 120.12749 * 359.96618 * 9 8 7 11 11 O 1.35929 * 119.86824 * 179.97438 * 10 9 8 12 12 C 1.36451 * 124.03579 * 92.93375 * 3 2 1 13 13 C 1.40811 * 123.29899 * 0.02562 * 12 3 2 14 14 H 1.07997 * 119.99668 * 318.77055 * 13 12 3 15 15 C 1.39704 * 120.00223 * 138.77536 * 13 12 3 16 16 N 1.31079 * 120.00291 * 155.53248 * 15 13 12 17 17 Si 1.86801 * 119.99676 * 335.52538 * 15 13 12 18 18 H 1.48506 * 109.46816 * 95.12335 * 17 15 13 19 19 H 1.48499 * 109.47189 * 215.12107 * 17 15 13 20 20 H 1.48501 * 109.47277 * 335.12559 * 17 15 13 21 21 H 1.08996 * 109.46770 * 299.01332 * 1 2 3 22 22 H 1.08998 * 109.46822 * 59.01508 * 1 2 3 23 23 H 1.08996 * 109.46859 * 179.01936 * 1 2 3 24 24 H 1.09005 * 109.47156 * 119.99797 * 2 1 3 25 25 H 1.08997 * 109.46884 * 239.99717 * 2 1 3 26 26 H 1.07993 * 119.79148 * 180.02562 * 7 6 5 27 27 H 1.08003 * 119.84110 * 179.97438 * 8 7 6 28 28 H 1.07999 * 119.93205 * 180.02562 * 9 8 7 29 29 H 0.96699 * 113.99703 * 270.07214 * 11 10 9 30 30 H 0.97004 * 120.00004 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 16 2.2746 2.3442 -1.4065 5 6 2.8251 3.7509 -0.5077 6 6 2.8118 3.4840 0.8588 7 6 3.2195 4.4848 1.7593 8 6 3.6264 5.7136 1.2965 9 6 3.6397 5.9795 -0.0634 10 6 3.2441 5.0092 -0.9635 11 8 3.2587 5.2758 -2.2962 12 6 2.3416 2.1215 1.1293 13 6 2.2239 1.5876 2.4269 14 1 1.3690 0.9805 2.6855 15 6 3.2129 1.8433 3.3799 16 7 2.9229 1.7868 4.6569 17 14 4.9488 2.2654 2.8341 18 1 5.1096 3.7412 2.7928 19 1 5.9238 1.6880 3.7939 20 1 5.1931 1.7029 1.4816 21 1 -0.3633 0.4984 0.8987 22 1 -0.3633 0.5291 -0.8810 23 1 -0.3633 -1.0275 -0.0176 24 1 1.8934 -0.5138 0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 3.2128 4.2865 2.8208 27 1 3.9371 6.4754 1.9962 28 1 3.9609 6.9469 -0.4202 29 1 2.4315 5.6472 -2.6321 30 1 3.6098 1.9640 5.3186 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396320571.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:12 Heat of formation + Delta-G solvation = -17.883812 kcal Electronic energy + Delta-G solvation = -15755.997144 eV Core-core repulsion = 13221.024228 eV Total energy + Delta-G solvation = -2534.972916 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.22257 -36.93946 -34.95498 -33.08079 -31.83768 -29.29819 -28.15159 -25.97295 -23.03889 -22.20130 -20.85072 -19.35333 -18.06408 -16.56190 -16.44409 -15.24470 -15.01937 -14.75216 -14.23023 -13.84890 -13.07300 -12.91711 -12.84148 -12.42023 -12.06539 -11.65200 -11.51296 -11.37009 -11.03973 -10.58002 -10.40838 -10.33691 -10.08413 -9.95511 -9.70170 -9.59474 -9.13471 -8.28646 -7.55224 -6.92060 -6.72163 -4.39053 1.54738 1.76918 2.59826 2.93957 3.16078 3.25362 3.40220 3.49180 3.99770 4.22958 4.61856 4.99215 5.42306 5.51135 5.82903 5.91563 5.95514 6.08324 6.22667 6.24160 6.48850 6.53431 6.72559 6.82278 6.87562 6.97062 7.04034 7.06076 7.21841 7.40571 7.87519 8.01329 8.31472 8.54051 8.81680 10.11577 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.017337 B = 0.013944 C = 0.008675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.662049 B = 2007.600927 C = 3226.900472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.014 4.014 3 C -0.357 4.357 4 S 0.076 5.924 5 C -0.160 4.160 6 C -0.060 4.060 7 C -0.077 4.077 8 C -0.133 4.133 9 C -0.140 4.140 10 C 0.114 3.886 11 O -0.497 6.497 12 C 0.082 3.918 13 C -0.446 4.446 14 H 0.094 0.906 15 C 0.095 3.905 16 N -0.810 5.810 17 Si 0.870 3.130 18 H -0.249 1.249 19 H -0.283 1.283 20 H -0.251 1.251 21 H 0.055 0.945 22 H 0.043 0.957 23 H 0.041 0.959 24 H 0.073 0.927 25 H 0.043 0.957 26 H 0.128 0.872 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.380 0.620 30 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.091 4.622 -6.467 7.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.054 4.054 3 C -0.473 4.473 4 S 0.341 5.659 5 C -0.276 4.276 6 C -0.070 4.070 7 C -0.096 4.096 8 C -0.155 4.155 9 C -0.161 4.161 10 C 0.064 3.936 11 O -0.306 6.306 12 C 0.072 3.928 13 C -0.478 4.478 14 H 0.112 0.888 15 C -0.123 4.123 16 N -0.436 5.436 17 Si 0.694 3.306 18 H -0.174 1.174 19 H -0.210 1.210 20 H -0.174 1.174 21 H 0.074 0.926 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.091 0.909 25 H 0.062 0.938 26 H 0.146 0.854 27 H 0.139 0.861 28 H 0.141 0.859 29 H 0.234 0.766 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.279 3.965 -7.672 8.641 hybrid contribution 0.509 0.681 1.502 1.726 sum 0.788 4.647 -6.170 7.764 Atomic orbital electron populations 1.21767 0.96963 0.99679 1.01529 1.19464 0.93930 0.91203 1.00766 1.22964 1.28930 1.01006 0.94438 1.81853 1.70320 1.03605 1.10155 1.23023 1.07739 0.98855 0.98022 1.19665 1.00459 0.95788 0.91041 1.21124 0.96562 0.92044 0.99909 1.20643 1.03064 0.97048 0.94750 1.20984 1.03744 0.98417 0.92982 1.17688 1.02309 0.90941 0.82666 1.84823 1.40082 1.85400 1.20291 1.17392 0.93454 0.87873 0.94036 1.18633 1.07857 1.29591 0.91686 0.88802 1.25889 1.00771 0.91625 0.94019 1.69875 1.35475 1.36581 1.01663 0.87076 0.82103 0.80686 0.80743 1.17365 1.20965 1.17427 0.92613 0.93762 0.94029 0.90858 0.93784 0.85444 0.86098 0.85861 0.76557 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.90 37.16 0.37 -2.20 16 2 C -0.01 -0.29 6.07 -27.88 -0.17 -0.46 16 3 C -0.36 -8.23 5.56 -34.96 -0.19 -8.43 16 4 S 0.08 1.58 22.85 -107.50 -2.46 -0.88 16 5 C -0.16 -3.51 6.39 -38.46 -0.25 -3.76 16 6 C -0.06 -1.41 4.80 -105.22 -0.51 -1.91 16 7 C -0.08 -1.67 6.61 -38.95 -0.26 -1.93 16 8 C -0.13 -2.45 10.01 -39.74 -0.40 -2.85 16 9 C -0.14 -2.45 9.96 -39.50 -0.39 -2.84 16 10 C 0.11 2.17 6.73 -38.87 -0.26 1.91 16 11 O -0.50 -8.14 13.47 -19.52 -0.26 -8.41 16 12 C 0.08 2.05 4.69 -106.18 -0.50 1.55 16 13 C -0.45 -11.77 8.55 -38.06 -0.33 -12.09 16 14 H 0.09 2.62 8.06 -52.49 -0.42 2.19 16 15 C 0.09 2.44 4.52 -17.33 -0.08 2.36 16 16 N -0.81 -21.16 13.94 55.54 0.77 -20.39 16 17 Si 0.87 20.24 24.43 -169.99 -4.15 16.09 16 18 H -0.25 -5.46 5.54 56.52 0.31 -5.15 16 19 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 20 H -0.25 -6.24 7.11 56.52 0.40 -5.84 16 21 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 22 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.07 1.57 7.47 -51.93 -0.39 1.18 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.13 2.85 5.65 -52.49 -0.30 2.56 16 27 H 0.12 1.84 8.06 -52.48 -0.42 1.41 16 28 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 29 H 0.38 4.34 9.06 45.56 0.41 4.75 16 30 H 0.28 6.72 8.30 -40.82 -0.34 6.39 16 LS Contribution 265.46 15.07 4.00 4.00 Total: -1.00 -28.26 265.46 -7.51 -35.77 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -2.45 Total: 4.45 kcal Atomic # 6 Polarization: -27.68 SS G_CDS: -2.96 Total: -30.64 kcal Atomic # 7 Polarization: -21.16 SS G_CDS: 0.77 Total: -20.39 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -0.26 Total: -8.41 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.15 Total: 16.09 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.46 Total: -0.88 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -28.26 -7.51 -35.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396320571.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.890 kcal (2) G-P(sol) polarization free energy of solvation -28.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds