Wall clock time and date at job start Mon Mar 30 2020 05:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50693 * 109.47363 * 2 1 4 4 S 1.69990 * 124.03077 * 273.23678 * 3 2 1 5 5 C 1.75779 * 93.22333 * 179.97438 * 4 3 2 6 6 C 1.39235 * 110.20984 * 359.97438 * 5 4 3 7 7 C 1.40666 * 119.28114 * 179.97438 * 6 5 4 8 8 C 1.37467 * 120.41720 * 0.02562 * 7 6 5 9 9 C 1.38573 * 120.31251 * 359.97438 * 8 7 6 10 10 C 1.38133 * 120.12749 * 359.96618 * 9 8 7 11 11 O 1.35929 * 119.86824 * 179.97438 * 10 9 8 12 12 C 1.36451 * 124.03579 * 92.93375 * 3 2 1 13 13 C 1.40811 * 123.29899 * 0.02562 * 12 3 2 14 14 H 1.07997 * 119.99668 * 318.77055 * 13 12 3 15 15 C 1.39704 * 120.00223 * 138.77536 * 13 12 3 16 16 N 1.31079 * 120.00291 * 155.53248 * 15 13 12 17 17 Si 1.86801 * 119.99676 * 335.52538 * 15 13 12 18 18 H 1.48506 * 109.46816 * 95.12335 * 17 15 13 19 19 H 1.48499 * 109.47189 * 215.12107 * 17 15 13 20 20 H 1.48501 * 109.47277 * 335.12559 * 17 15 13 21 21 H 1.08996 * 109.46770 * 299.01332 * 1 2 3 22 22 H 1.08998 * 109.46822 * 59.01508 * 1 2 3 23 23 H 1.08996 * 109.46859 * 179.01936 * 1 2 3 24 24 H 1.09005 * 109.47156 * 119.99797 * 2 1 3 25 25 H 1.08997 * 109.46884 * 239.99717 * 2 1 3 26 26 H 1.07993 * 119.79148 * 180.02562 * 7 6 5 27 27 H 1.08003 * 119.84110 * 179.97438 * 8 7 6 28 28 H 1.07999 * 119.93205 * 180.02562 * 9 8 7 29 29 H 0.96699 * 113.99703 * 270.07214 * 11 10 9 30 30 H 0.97004 * 120.00004 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 16 2.2746 2.3442 -1.4065 5 6 2.8251 3.7509 -0.5077 6 6 2.8118 3.4840 0.8588 7 6 3.2195 4.4848 1.7593 8 6 3.6264 5.7136 1.2965 9 6 3.6397 5.9795 -0.0634 10 6 3.2441 5.0092 -0.9635 11 8 3.2587 5.2758 -2.2962 12 6 2.3416 2.1215 1.1293 13 6 2.2239 1.5876 2.4269 14 1 1.3690 0.9805 2.6855 15 6 3.2129 1.8433 3.3799 16 7 2.9229 1.7868 4.6569 17 14 4.9488 2.2654 2.8341 18 1 5.1096 3.7412 2.7928 19 1 5.9238 1.6880 3.7939 20 1 5.1931 1.7029 1.4816 21 1 -0.3633 0.4984 0.8987 22 1 -0.3633 0.5291 -0.8810 23 1 -0.3633 -1.0275 -0.0176 24 1 1.8934 -0.5138 0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 3.2128 4.2865 2.8208 27 1 3.9371 6.4754 1.9962 28 1 3.9609 6.9469 -0.4202 29 1 2.4315 5.6472 -2.6321 30 1 3.6098 1.9640 5.3186 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396320571.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:12 Heat of formation + Delta-G solvation = -36.105195 kcal Electronic energy + Delta-G solvation = -15756.787283 eV Core-core repulsion = 13221.024228 eV Total energy + Delta-G solvation = -2535.763055 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.74359 -38.45141 -36.54219 -34.94633 -33.43694 -30.87286 -29.77125 -27.76876 -24.63795 -23.75002 -22.42896 -21.17297 -19.57321 -18.24623 -18.08630 -16.92322 -16.57480 -16.37001 -15.81009 -15.39053 -14.79066 -14.70231 -14.38478 -14.04847 -13.70616 -13.24606 -13.12138 -12.99404 -12.82134 -12.19814 -12.14399 -11.96327 -11.77969 -11.50553 -11.35068 -11.31758 -10.97986 -9.93130 -9.19578 -8.84020 -8.41530 -6.33211 -0.04844 0.23579 0.96775 1.14158 1.27235 1.38843 1.61446 1.70327 2.12302 2.61193 3.05538 3.31454 3.92365 4.11157 4.23724 4.37200 4.45410 4.55258 4.64206 4.75972 4.96521 5.02282 5.20983 5.21932 5.22109 5.36530 5.40599 5.47153 5.54343 5.88761 6.05957 6.27511 6.64657 6.82673 6.87470 8.25369 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.017337 B = 0.013944 C = 0.008675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.662049 B = 2007.600927 C = 3226.900472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.021 4.021 3 C -0.358 4.358 4 S 0.110 5.890 5 C -0.188 4.188 6 C -0.088 4.088 7 C -0.107 4.107 8 C -0.117 4.117 9 C -0.128 4.128 10 C 0.122 3.878 11 O -0.497 6.497 12 C 0.053 3.947 13 C -0.472 4.472 14 H 0.058 0.942 15 C 0.070 3.930 16 N -0.849 5.849 17 Si 0.916 3.084 18 H -0.225 1.225 19 H -0.274 1.274 20 H -0.278 1.278 21 H 0.031 0.969 22 H 0.055 0.945 23 H 0.070 0.930 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.112 0.888 27 H 0.158 0.842 28 H 0.168 0.832 29 H 0.405 0.595 30 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.810 6.819 -8.659 11.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.060 4.060 3 C -0.474 4.474 4 S 0.375 5.625 5 C -0.304 4.304 6 C -0.098 4.098 7 C -0.127 4.127 8 C -0.138 4.138 9 C -0.149 4.149 10 C 0.072 3.928 11 O -0.309 6.309 12 C 0.043 3.957 13 C -0.505 4.505 14 H 0.076 0.924 15 C -0.144 4.144 16 N -0.478 5.478 17 Si 0.739 3.261 18 H -0.148 1.148 19 H -0.200 1.200 20 H -0.203 1.203 21 H 0.050 0.950 22 H 0.074 0.926 23 H 0.089 0.911 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.130 0.870 27 H 0.176 0.824 28 H 0.185 0.815 29 H 0.264 0.736 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.162 6.188 -9.875 11.711 hybrid contribution 0.157 0.057 1.950 1.957 sum 1.319 6.245 -7.925 10.176 Atomic orbital electron populations 1.21657 0.95007 1.01476 1.00809 1.19592 0.95642 0.90000 1.00789 1.23576 1.25911 1.02259 0.95645 1.81520 1.70075 1.02781 1.08087 1.23357 1.09090 1.00407 0.97540 1.19693 1.02188 0.95444 0.92442 1.21182 0.98912 0.93511 0.99060 1.21098 1.00436 0.96102 0.96179 1.21439 1.01736 0.99627 0.92098 1.17836 1.00873 0.90067 0.84042 1.84761 1.41897 1.85518 1.18761 1.17620 0.94985 0.89274 0.93855 1.18511 1.07726 1.30906 0.93379 0.92370 1.26311 1.02819 0.91466 0.93833 1.69894 1.36588 1.38901 1.02367 0.86397 0.79180 0.81803 0.78757 1.14846 1.20009 1.20303 0.94962 0.92635 0.91109 0.92865 0.91653 0.87035 0.82403 0.81476 0.73604 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 9.90 71.98 0.71 -4.03 16 2 C -0.02 -0.86 6.07 29.85 0.18 -0.67 16 3 C -0.36 -16.66 5.56 25.27 0.14 -16.52 16 4 S 0.11 4.45 22.85 -56.49 -1.29 3.15 16 5 C -0.19 -7.91 6.39 23.00 0.15 -7.76 16 6 C -0.09 -4.15 4.80 -20.25 -0.10 -4.25 16 7 C -0.11 -4.55 6.61 22.68 0.15 -4.40 16 8 C -0.12 -3.86 10.01 22.17 0.22 -3.64 16 9 C -0.13 -3.83 9.96 22.32 0.22 -3.61 16 10 C 0.12 4.20 6.73 22.73 0.15 4.35 16 11 O -0.50 -14.03 13.47 -92.75 -1.25 -15.28 16 12 C 0.05 2.71 4.69 -20.87 -0.10 2.62 16 13 C -0.47 -26.47 8.55 23.25 0.20 -26.27 16 14 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 15 C 0.07 3.76 4.52 85.16 0.39 4.14 16 16 N -0.85 -46.43 13.94 21.80 0.30 -46.12 16 17 Si 0.92 42.62 24.43 68.60 1.68 44.29 16 18 H -0.23 -9.49 5.54 99.48 0.55 -8.94 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 20 H -0.28 -14.02 7.11 99.48 0.71 -13.31 16 21 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 24 H 0.05 2.39 7.47 -2.38 -0.02 2.37 16 25 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.11 5.03 5.65 -2.91 -0.02 5.01 16 27 H 0.16 3.99 8.06 -2.91 -0.02 3.96 16 28 H 0.17 3.57 8.06 -2.91 -0.02 3.55 16 29 H 0.41 7.30 9.06 -74.06 -0.67 6.63 16 30 H 0.29 14.30 8.30 -92.71 -0.77 13.53 16 Total: -1.00 -63.61 265.46 2.10 -61.51 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.34 Total: 12.48 kcal Atomic # 6 Polarization: -62.35 SS G_CDS: 2.32 Total: -60.04 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.30 Total: -46.12 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -1.25 Total: -15.28 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.68 Total: 44.29 kcal Atomic # 16 Polarization: 4.45 SS G_CDS: -1.29 Total: 3.15 kcal Total: -63.61 2.10 -61.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396320571.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.405 kcal (2) G-P(sol) polarization free energy of solvation -63.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds