Wall clock time and date at job start Mon Mar 30 2020 05:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.47337 * 2 1 4 4 C 1.32581 * 122.05742 * 265.02729 * 3 2 1 5 5 S 1.75485 * 110.80715 * 180.02562 * 4 3 2 6 6 C 1.76067 * 91.53389 * 359.97438 * 5 4 3 7 7 C 1.38946 * 130.42385 * 179.97438 * 6 5 4 8 8 C 1.40429 * 120.06835 * 179.15172 * 7 6 5 9 9 C 1.40996 * 120.17651 * 180.29353 * 8 7 6 10 10 H 1.08001 * 120.00755 * 205.20210 * 9 8 7 11 11 C 1.39840 * 119.99561 * 25.21103 * 9 8 7 12 12 N 1.30903 * 120.00247 * 17.78939 * 11 9 8 13 13 Si 1.86793 * 119.99651 * 197.79779 * 11 9 8 14 14 H 1.48502 * 109.47505 * 89.99918 * 13 11 9 15 15 H 1.48505 * 109.47057 * 209.99618 * 13 11 9 16 16 H 1.48501 * 109.47413 * 329.99551 * 13 11 9 17 17 C 1.41145 * 119.64987 * 0.83707 * 8 7 6 18 18 C 1.35691 * 120.33868 * 359.46451 * 17 8 7 19 19 O 1.35842 * 119.61792 * 180.02562 * 18 17 8 20 20 C 1.40253 * 109.37569 * 359.74480 * 6 5 4 21 21 H 1.08998 * 109.47345 * 180.02562 * 1 2 3 22 22 H 1.08992 * 109.47035 * 59.99718 * 1 2 3 23 23 H 1.09004 * 109.46695 * 300.00281 * 1 2 3 24 24 H 1.09001 * 109.47223 * 120.00154 * 2 1 3 25 25 H 1.09004 * 109.46695 * 239.99719 * 2 1 3 26 26 H 1.07999 * 124.59673 * 0.02562 * 4 3 2 27 27 H 1.08000 * 119.96767 * 0.02562 * 7 6 5 28 28 H 0.97001 * 120.00309 * 179.97438 * 12 11 9 29 29 H 1.08007 * 119.83496 * 179.47711 * 17 8 7 30 30 H 0.96702 * 114.00059 * 269.96735 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3589 2.0517 -1.1194 5 16 2.9053 3.6841 -0.7783 6 6 2.6640 3.4542 0.9506 7 6 2.8743 4.3244 2.0132 8 6 2.5885 3.9144 3.3255 9 6 2.7952 4.7977 4.4049 10 1 2.9756 4.4071 5.3955 11 6 2.7664 6.1796 4.1928 12 7 2.2169 6.6640 3.1079 13 14 3.5125 7.3343 5.4574 14 1 4.9434 7.5649 5.1340 15 1 2.7853 8.6289 5.4355 16 1 3.4019 6.7272 6.8082 17 6 2.1040 2.6095 3.5595 18 6 1.9039 1.7566 2.5233 19 8 1.4366 0.5043 2.7651 20 6 2.1776 2.1597 1.1844 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 2.2968 1.6197 -2.1073 27 1 3.2447 5.3219 1.8284 28 1 2.1966 7.6226 2.9609 29 1 1.8911 2.2882 4.5685 30 1 2.1305 -0.1521 2.9163 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396320685.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:37 Heat of formation + Delta-G solvation = -40.007578 kcal Electronic energy + Delta-G solvation = -15514.564177 eV Core-core repulsion = 12978.631902 eV Total energy + Delta-G solvation = -2535.932275 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.72615 -37.67544 -37.44427 -35.02580 -32.65021 -30.41124 -30.10048 -27.14484 -25.06127 -23.24329 -22.89278 -20.20910 -20.02664 -18.29006 -17.61054 -16.99337 -16.37972 -16.14649 -15.62795 -15.01941 -14.70707 -14.53930 -14.16646 -13.81763 -13.48988 -13.34411 -12.96374 -12.85998 -12.66477 -12.43804 -12.09187 -11.91670 -11.65554 -11.58600 -11.33662 -11.02040 -10.89366 -10.00429 -9.21885 -8.77675 -8.31511 -6.41857 0.16003 0.78703 0.98608 1.32795 1.38923 1.42996 1.52556 1.77584 2.15539 2.58603 3.43979 3.60674 4.10792 4.19285 4.41253 4.62016 4.64119 4.80926 4.89409 4.97065 5.09618 5.10844 5.16191 5.30150 5.34429 5.47766 5.53938 5.81462 5.89495 6.00254 6.02048 6.42325 6.72889 6.73851 7.08045 8.18140 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.030677 B = 0.007386 C = 0.006209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.531521 B = 3790.195079 C = 4508.562708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.058 4.058 3 C -0.044 4.044 4 C -0.259 4.259 5 S 0.001 5.999 6 C -0.089 4.089 7 C -0.194 4.194 8 C 0.109 3.891 9 C -0.470 4.470 10 H 0.092 0.908 11 C 0.032 3.968 12 N -0.810 5.810 13 Si 0.990 3.010 14 H -0.261 1.261 15 H -0.268 1.268 16 H -0.251 1.251 17 C -0.241 4.241 18 C 0.173 3.827 19 O -0.497 6.497 20 C -0.234 4.234 21 H 0.077 0.923 22 H 0.046 0.954 23 H 0.033 0.967 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.179 0.821 27 H 0.104 0.896 28 H 0.293 0.707 29 H 0.117 0.883 30 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.992 -7.329 -2.753 7.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.097 4.097 3 C -0.055 4.055 4 C -0.391 4.391 5 S 0.262 5.738 6 C -0.204 4.204 7 C -0.220 4.220 8 C 0.103 3.897 9 C -0.499 4.499 10 H 0.110 0.890 11 C -0.185 4.185 12 N -0.434 5.434 13 Si 0.809 3.191 14 H -0.186 1.186 15 H -0.192 1.192 16 H -0.174 1.174 17 C -0.261 4.261 18 C 0.126 3.874 19 O -0.309 6.309 20 C -0.240 4.240 21 H 0.096 0.904 22 H 0.065 0.935 23 H 0.053 0.947 24 H 0.098 0.902 25 H 0.102 0.898 26 H 0.196 0.804 27 H 0.122 0.878 28 H 0.104 0.896 29 H 0.135 0.865 30 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 0.855 -5.726 -3.938 7.002 hybrid contribution 0.145 -0.315 1.312 1.357 sum 1.000 -6.042 -2.626 6.663 Atomic orbital electron populations 1.21583 0.94693 1.02003 1.00720 1.20356 0.96201 0.90018 1.03151 1.18835 0.98226 0.97999 0.90457 1.24773 1.15267 0.96818 1.02242 1.83564 1.73941 1.16438 0.99817 1.22540 1.03519 0.97622 0.96716 1.20522 1.11009 0.99161 0.91324 1.17621 0.87660 0.91671 0.92753 1.19925 1.42187 0.91539 0.96240 0.88996 1.26940 0.92376 1.00733 0.98457 1.69924 1.30095 1.16365 1.27019 0.85078 0.78915 0.76623 0.78451 1.18580 1.19233 1.17439 1.21045 1.10122 0.96661 0.98263 1.17753 0.94534 0.85354 0.89733 1.84700 1.36662 1.16613 1.92914 1.18232 1.16454 0.95031 0.94292 0.90442 0.93491 0.94730 0.90181 0.89820 0.80365 0.87821 0.89595 0.86451 0.74405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 9.79 71.98 0.70 -3.00 16 2 C -0.06 -1.65 5.48 29.85 0.16 -1.49 16 3 C -0.04 -1.66 5.07 -20.50 -0.10 -1.77 16 4 C -0.26 -9.41 10.80 66.67 0.72 -8.69 16 5 S 0.00 0.03 23.29 -56.49 -1.32 -1.28 16 6 C -0.09 -4.43 6.46 22.93 0.15 -4.28 16 7 C -0.19 -10.50 8.73 22.97 0.20 -10.30 16 8 C 0.11 5.80 5.56 -21.36 -0.12 5.68 16 9 C -0.47 -24.22 9.02 23.33 0.21 -24.01 16 10 H 0.09 4.42 7.90 -2.91 -0.02 4.40 16 11 C 0.03 1.57 5.12 85.22 0.44 2.01 16 12 N -0.81 -41.75 10.98 21.81 0.24 -41.51 16 13 Si 0.99 36.32 29.59 68.60 2.03 38.35 16 14 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 15 H -0.27 -9.41 7.11 99.48 0.71 -8.70 16 16 H -0.25 -8.78 7.11 99.48 0.71 -8.08 16 17 C -0.24 -11.56 9.59 22.39 0.21 -11.35 16 18 C 0.17 7.59 6.71 22.73 0.15 7.74 16 19 O -0.50 -17.28 10.65 -91.78 -0.98 -18.26 16 20 C -0.23 -10.63 5.88 -21.22 -0.12 -10.76 16 21 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.03 1.16 7.66 -2.39 -0.02 1.14 16 24 H 0.08 2.15 6.08 -2.39 -0.01 2.13 16 25 H 0.08 1.96 8.08 -2.39 -0.02 1.94 16 26 H 0.18 5.15 8.06 -2.91 -0.02 5.13 16 27 H 0.10 5.90 6.15 -2.91 -0.02 5.89 16 28 H 0.29 13.61 8.30 -92.71 -0.77 12.84 16 29 H 0.12 5.22 8.06 -2.91 -0.02 5.20 16 30 H 0.40 9.75 8.57 -74.06 -0.63 9.11 16 Total: -1.00 -60.75 269.20 3.12 -57.63 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.54 Total: 25.30 kcal Atomic # 6 Polarization: -62.82 SS G_CDS: 2.60 Total: -60.21 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.24 Total: -41.51 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.98 Total: -18.26 kcal Atomic # 14 Polarization: 36.32 SS G_CDS: 2.03 Total: 38.35 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -1.32 Total: -1.28 kcal Total: -60.75 3.12 -57.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396320685.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.620 kcal (2) G-P(sol) polarization free energy of solvation -60.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds