Wall clock time and date at job start Mon Mar 30 2020 05:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50705 * 109.47138 * 2 1 4 4 C 1.31895 * 124.34876 * 89.72427 * 3 2 1 5 5 C 1.45466 * 114.88417 * 179.87464 * 4 3 2 6 6 C 1.41620 * 129.03844 * 180.17023 * 5 4 3 7 7 C 1.37382 * 121.02887 * 180.27187 * 6 5 4 8 8 C 1.38667 * 120.68520 * 359.97102 * 7 6 5 9 9 O 1.35651 * 120.14148 * 179.97438 * 8 7 6 10 10 C 1.40961 * 119.71499 * 0.02562 * 8 7 6 11 11 C 1.40767 * 120.14288 * 180.02562 * 10 8 7 12 12 H 1.08000 * 119.99567 * 38.78312 * 11 10 8 13 13 C 1.39855 * 120.00011 * 218.78647 * 11 10 8 14 14 N 1.30953 * 120.00036 * 21.01801 * 13 11 10 15 15 Si 1.86795 * 119.99756 * 201.02381 * 13 11 10 16 16 H 1.48501 * 109.47469 * 59.99834 * 15 13 11 17 17 H 1.48507 * 109.46859 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47395 * 299.99390 * 15 13 11 19 19 C 1.39249 * 111.85559 * 0.40062 * 5 4 3 20 20 S 1.75311 * 124.35016 * 270.02841 * 3 2 1 21 21 H 1.09004 * 109.47375 * 299.99732 * 1 2 3 22 22 H 1.09007 * 109.47707 * 59.99876 * 1 2 3 23 23 H 1.09002 * 109.47395 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47328 * 120.00140 * 2 1 3 25 25 H 1.09004 * 109.47375 * 240.00268 * 2 1 3 26 26 H 1.08002 * 122.56348 * 0.02562 * 4 3 2 27 27 H 1.08001 * 119.48741 * 0.24548 * 6 5 4 28 28 H 1.07999 * 119.65863 * 180.02562 * 7 6 5 29 29 H 0.96697 * 114.00595 * 84.96285 * 9 8 7 30 30 H 0.97003 * 119.99577 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2754 2.1242 1.0889 5 6 2.7575 3.4757 0.8498 6 6 3.1106 4.4759 1.7881 7 6 3.5462 5.7118 1.3756 8 6 3.6516 6.0107 0.0256 9 8 4.0825 7.2348 -0.3694 10 6 3.3081 5.0374 -0.9344 11 6 3.4121 5.3309 -2.3072 12 1 4.2413 5.9188 -2.6722 13 6 2.4419 4.8614 -3.1982 14 7 1.2570 4.5213 -2.7564 15 14 2.8362 4.7191 -5.0185 16 1 3.9771 3.7873 -5.2066 17 1 1.6486 4.1996 -5.7431 18 1 3.1965 6.0569 -5.5530 19 6 2.8569 3.7575 -0.5103 20 16 2.3613 2.3537 -1.4474 21 1 -0.3634 0.5138 0.8900 22 1 -0.3635 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 2.1301 1.7264 2.0824 27 1 3.0359 4.2639 2.8445 28 1 3.8101 6.4581 2.1103 29 1 5.0449 7.3190 -0.4096 30 1 0.5841 4.1952 -3.3744 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396320713.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:16 Heat of formation + Delta-G solvation = -23.826913 kcal Electronic energy + Delta-G solvation = -15556.817507 eV Core-core repulsion = 13021.586878 eV Total energy + Delta-G solvation = -2535.230629 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.34980 -36.39585 -34.68130 -33.62529 -31.33828 -29.86482 -26.95797 -25.30061 -23.31324 -21.99162 -20.40525 -19.16938 -17.61074 -17.00351 -15.49777 -15.20842 -14.60991 -14.44699 -13.83857 -13.43519 -13.40030 -12.84629 -12.70861 -12.02496 -11.94941 -11.56728 -11.47277 -11.23395 -11.08462 -10.82667 -10.62835 -10.53079 -10.15986 -9.73749 -9.59386 -9.16531 -8.77800 -8.20454 -7.07729 -6.96976 -6.21641 -4.47438 1.90986 2.66257 2.81862 3.02366 3.05330 3.09241 3.42813 3.48736 3.91031 4.52624 5.16587 5.21334 5.40721 5.64091 5.65707 5.82962 6.05698 6.11889 6.17336 6.22885 6.38636 6.47503 6.71418 6.85963 7.04839 7.13170 7.23778 7.44768 7.60877 7.80881 7.97071 8.26021 8.49946 8.71505 9.08846 10.09040 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.017575 B = 0.012204 C = 0.007627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.765908 B = 2293.788546 C = 3670.461821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.047 4.047 3 C -0.201 4.201 4 C -0.133 4.133 5 C -0.059 4.059 6 C -0.192 4.192 7 C -0.107 4.107 8 C -0.012 4.012 9 O -0.486 6.486 10 C 0.132 3.868 11 C -0.458 4.458 12 H 0.085 0.915 13 C 0.071 3.929 14 N -0.767 5.767 15 Si 0.899 3.101 16 H -0.261 1.261 17 H -0.275 1.275 18 H -0.264 1.264 19 C -0.154 4.154 20 S 0.117 5.883 21 H 0.055 0.945 22 H 0.058 0.942 23 H 0.052 0.948 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.118 0.882 27 H 0.097 0.903 28 H 0.101 0.899 29 H 0.353 0.647 30 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.971 -6.034 2.037 6.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.086 4.086 3 C -0.317 4.317 4 C -0.165 4.165 5 C -0.067 4.067 6 C -0.213 4.213 7 C -0.127 4.127 8 C -0.061 4.061 9 O -0.292 6.292 10 C 0.126 3.874 11 C -0.487 4.487 12 H 0.103 0.897 13 C -0.149 4.149 14 N -0.392 5.392 15 Si 0.723 3.277 16 H -0.185 1.185 17 H -0.200 1.200 18 H -0.188 1.188 19 C -0.271 4.271 20 S 0.383 5.617 21 H 0.074 0.926 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.136 0.864 27 H 0.115 0.885 28 H 0.119 0.881 29 H 0.204 0.796 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.034 -6.371 0.361 6.381 hybrid contribution 0.600 0.301 0.820 1.060 sum 0.566 -6.070 1.181 6.210 Atomic orbital electron populations 1.21760 0.95011 1.00870 1.02630 1.19992 0.95733 0.90968 1.01955 1.24221 1.07859 1.00121 0.99470 1.20645 1.04521 0.93597 0.97776 1.18993 1.01591 0.93253 0.92847 1.19998 1.11556 0.93392 0.96368 1.20665 1.01404 0.95789 0.94834 1.18331 1.12269 0.85207 0.90267 1.84825 1.24530 1.29651 1.90155 1.17087 0.89590 0.87249 0.93458 1.19173 1.08482 1.29923 0.91121 0.89701 1.25833 0.94080 0.93428 1.01553 1.69847 1.02379 1.28726 1.38245 0.86451 0.79370 0.79951 0.81904 1.18521 1.20006 1.18821 1.22373 1.12711 0.97944 0.94029 1.83718 1.69350 1.02554 1.06044 0.92596 0.92288 0.92920 0.91256 0.91552 0.86368 0.88472 0.88123 0.79574 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.89 37.15 0.37 -1.66 16 2 C -0.05 -0.72 6.37 -27.88 -0.18 -0.90 16 3 C -0.20 -3.98 5.64 -36.21 -0.20 -4.19 16 4 C -0.13 -2.77 10.22 -38.61 -0.39 -3.16 16 5 C -0.06 -1.42 6.04 -105.35 -0.64 -2.05 16 6 C -0.19 -4.31 10.08 -38.60 -0.39 -4.70 16 7 C -0.11 -2.43 9.91 -39.73 -0.39 -2.82 16 8 C -0.01 -0.30 6.73 -38.39 -0.26 -0.56 16 9 O -0.49 -11.12 12.92 -18.65 -0.24 -11.37 16 10 C 0.13 3.55 5.38 -106.40 -0.57 2.98 16 11 C -0.46 -12.18 8.43 -38.02 -0.32 -12.50 16 12 H 0.09 2.18 7.91 -52.49 -0.41 1.77 16 13 C 0.07 1.78 4.25 -17.32 -0.07 1.71 16 14 N -0.77 -19.87 10.69 55.54 0.59 -19.28 16 15 Si 0.90 18.88 29.61 -169.99 -5.03 13.84 16 16 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 17 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 18 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 19 C -0.15 -3.96 5.74 -37.69 -0.22 -4.18 16 20 S 0.12 2.67 19.82 -107.50 -2.13 0.54 16 21 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 27 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 28 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 29 H 0.35 6.24 9.06 45.56 0.41 6.65 16 30 H 0.29 6.83 8.30 -40.82 -0.34 6.49 16 LS Contribution 273.18 15.07 4.12 4.12 Total: -1.00 -29.23 273.18 -8.48 -37.71 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -2.52 Total: 6.46 kcal Atomic # 6 Polarization: -28.76 SS G_CDS: -3.27 Total: -32.03 kcal Atomic # 7 Polarization: -19.87 SS G_CDS: 0.59 Total: -19.28 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: -0.24 Total: -11.37 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.84 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -2.13 Total: 0.54 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.23 -8.48 -37.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396320713.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.887 kcal (2) G-P(sol) polarization free energy of solvation -29.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds