Wall clock time and date at job start Mon Mar 30 2020 05:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50705 * 109.47138 * 2 1 4 4 C 1.31895 * 124.34876 * 89.72427 * 3 2 1 5 5 C 1.45466 * 114.88417 * 179.87464 * 4 3 2 6 6 C 1.41620 * 129.03844 * 180.17023 * 5 4 3 7 7 C 1.37382 * 121.02887 * 180.27187 * 6 5 4 8 8 C 1.38667 * 120.68520 * 359.97102 * 7 6 5 9 9 O 1.35651 * 120.14148 * 179.97438 * 8 7 6 10 10 C 1.40961 * 119.71499 * 0.02562 * 8 7 6 11 11 C 1.40767 * 120.14288 * 180.02562 * 10 8 7 12 12 H 1.08000 * 119.99567 * 38.78312 * 11 10 8 13 13 C 1.39855 * 120.00011 * 218.78647 * 11 10 8 14 14 N 1.30953 * 120.00036 * 21.01801 * 13 11 10 15 15 Si 1.86795 * 119.99756 * 201.02381 * 13 11 10 16 16 H 1.48501 * 109.47469 * 59.99834 * 15 13 11 17 17 H 1.48507 * 109.46859 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47395 * 299.99390 * 15 13 11 19 19 C 1.39249 * 111.85559 * 0.40062 * 5 4 3 20 20 S 1.75311 * 124.35016 * 270.02841 * 3 2 1 21 21 H 1.09004 * 109.47375 * 299.99732 * 1 2 3 22 22 H 1.09007 * 109.47707 * 59.99876 * 1 2 3 23 23 H 1.09002 * 109.47395 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47328 * 120.00140 * 2 1 3 25 25 H 1.09004 * 109.47375 * 240.00268 * 2 1 3 26 26 H 1.08002 * 122.56348 * 0.02562 * 4 3 2 27 27 H 1.08001 * 119.48741 * 0.24548 * 6 5 4 28 28 H 1.07999 * 119.65863 * 180.02562 * 7 6 5 29 29 H 0.96697 * 114.00595 * 84.96285 * 9 8 7 30 30 H 0.97003 * 119.99577 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2754 2.1242 1.0889 5 6 2.7575 3.4757 0.8498 6 6 3.1106 4.4759 1.7881 7 6 3.5462 5.7118 1.3756 8 6 3.6516 6.0107 0.0256 9 8 4.0825 7.2348 -0.3694 10 6 3.3081 5.0374 -0.9344 11 6 3.4121 5.3309 -2.3072 12 1 4.2413 5.9188 -2.6722 13 6 2.4419 4.8614 -3.1982 14 7 1.2570 4.5213 -2.7564 15 14 2.8362 4.7191 -5.0185 16 1 3.9771 3.7873 -5.2066 17 1 1.6486 4.1996 -5.7431 18 1 3.1965 6.0569 -5.5530 19 6 2.8569 3.7575 -0.5103 20 16 2.3613 2.3537 -1.4474 21 1 -0.3634 0.5138 0.8900 22 1 -0.3635 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 2.1301 1.7264 2.0824 27 1 3.0359 4.2639 2.8445 28 1 3.8101 6.4581 2.1103 29 1 5.0449 7.3190 -0.4096 30 1 0.5841 4.1952 -3.3744 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396320713.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:16 Heat of formation + Delta-G solvation = -41.125003 kcal Electronic energy + Delta-G solvation = -15557.567608 eV Core-core repulsion = 13021.586878 eV Total energy + Delta-G solvation = -2535.980730 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.13118 -38.07605 -36.35433 -35.34249 -32.84081 -31.71816 -28.56017 -27.17019 -24.71951 -23.73855 -22.12055 -20.78373 -19.41788 -18.81382 -17.22424 -16.94478 -16.34418 -16.05233 -15.53414 -14.92724 -14.84327 -14.41228 -14.38487 -13.61871 -13.58866 -13.26310 -13.09273 -12.84834 -12.67230 -12.33868 -12.17338 -12.02363 -11.80867 -11.45162 -11.28449 -10.92924 -10.56661 -10.00998 -8.85880 -8.80391 -8.01397 -6.40935 0.19068 0.84249 1.14277 1.33113 1.37050 1.44173 1.71239 1.74790 2.17780 2.69023 3.33486 3.82616 3.90067 4.26273 4.37058 4.48076 4.53760 4.67132 4.76318 4.97499 5.00815 5.10504 5.13476 5.31258 5.37184 5.39161 5.48960 5.70147 5.79214 6.00527 6.20873 6.37377 6.65347 6.81949 7.35885 8.26713 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.017575 B = 0.012204 C = 0.007627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.765908 B = 2293.788546 C = 3670.461821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.047 4.047 3 C -0.183 4.183 4 C -0.146 4.146 5 C -0.080 4.080 6 C -0.187 4.187 7 C -0.113 4.113 8 C -0.030 4.030 9 O -0.497 6.497 10 C 0.096 3.904 11 C -0.494 4.494 12 H 0.077 0.923 13 C 0.038 3.962 14 N -0.798 5.798 15 Si 0.959 3.041 16 H -0.258 1.258 17 H -0.263 1.263 18 H -0.260 1.260 19 C -0.187 4.187 20 S 0.085 5.915 21 H 0.052 0.948 22 H 0.039 0.961 23 H 0.085 0.915 24 H 0.098 0.902 25 H 0.075 0.925 26 H 0.153 0.847 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.375 0.625 30 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.719 -7.621 3.002 8.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.086 4.086 3 C -0.299 4.299 4 C -0.177 4.177 5 C -0.088 4.088 6 C -0.209 4.209 7 C -0.133 4.133 8 C -0.079 4.079 9 O -0.306 6.306 10 C 0.090 3.910 11 C -0.524 4.524 12 H 0.095 0.905 13 C -0.179 4.179 14 N -0.424 5.424 15 Si 0.780 3.220 16 H -0.182 1.182 17 H -0.187 1.187 18 H -0.185 1.185 19 C -0.303 4.303 20 S 0.351 5.649 21 H 0.071 0.929 22 H 0.058 0.942 23 H 0.104 0.896 24 H 0.117 0.883 25 H 0.094 0.906 26 H 0.170 0.830 27 H 0.149 0.851 28 H 0.148 0.852 29 H 0.229 0.771 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.272 -7.950 1.345 8.067 hybrid contribution 0.705 0.796 0.669 1.256 sum 0.434 -7.154 2.014 7.445 Atomic orbital electron populations 1.21739 0.93890 1.02728 1.01562 1.20188 0.96539 0.88055 1.03848 1.24701 1.06180 1.01737 0.97325 1.20900 1.04772 0.92360 0.99624 1.19563 1.01584 0.95124 0.92496 1.20470 1.09609 0.92858 0.97929 1.20976 1.01031 0.96809 0.94498 1.18650 1.12637 0.85377 0.91225 1.84724 1.26621 1.28990 1.90258 1.17521 0.90893 0.88398 0.94208 1.19326 1.09248 1.31771 0.92022 0.90478 1.26485 0.93477 0.92642 1.05251 1.69894 1.03111 1.29740 1.39666 0.85562 0.79508 0.79990 0.76981 1.18214 1.18697 1.18468 1.22684 1.13720 0.98399 0.95489 1.83614 1.69986 1.02788 1.08490 0.92853 0.94200 0.89620 0.88346 0.90594 0.82962 0.85107 0.85152 0.77073 0.89790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.89 71.98 0.71 -2.83 16 2 C -0.05 -1.29 6.37 29.85 0.19 -1.10 16 3 C -0.18 -6.95 5.64 24.85 0.14 -6.81 16 4 C -0.15 -5.74 10.22 23.30 0.24 -5.50 16 5 C -0.08 -3.75 6.04 -20.34 -0.12 -3.87 16 6 C -0.19 -8.13 10.08 22.90 0.23 -7.90 16 7 C -0.11 -5.03 9.91 22.17 0.22 -4.81 16 8 C -0.03 -1.54 6.73 23.04 0.16 -1.38 16 9 O -0.50 -23.08 12.92 -89.67 -1.16 -24.24 16 10 C 0.10 5.29 5.38 -21.02 -0.11 5.18 16 11 C -0.49 -27.29 8.43 23.28 0.20 -27.09 16 12 H 0.08 4.16 7.91 -2.91 -0.02 4.14 16 13 C 0.04 1.98 4.25 85.22 0.36 2.34 16 14 N -0.80 -42.46 10.69 21.82 0.23 -42.23 16 15 Si 0.96 39.34 29.61 68.60 2.03 41.37 16 16 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 17 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 18 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 19 C -0.19 -9.77 5.74 23.49 0.13 -9.63 16 20 S 0.09 3.93 19.82 -56.49 -1.12 2.81 16 21 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 23 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.15 4.87 8.06 -2.91 -0.02 4.85 16 27 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 28 H 0.13 4.88 8.06 -2.91 -0.02 4.86 16 29 H 0.38 13.40 9.06 -74.06 -0.67 12.73 16 30 H 0.29 14.19 8.30 -92.71 -0.77 13.42 16 Total: -1.00 -64.48 273.18 2.82 -61.66 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 0.49 Total: 24.03 kcal Atomic # 6 Polarization: -65.75 SS G_CDS: 2.34 Total: -63.41 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 0.23 Total: -42.23 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -1.16 Total: -24.24 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.37 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -1.12 Total: 2.81 kcal Total: -64.48 2.82 -61.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396320713.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.538 kcal (2) G-P(sol) polarization free energy of solvation -64.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds