Wall clock time and date at job start Mon Mar 30 2020 05:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.47223 * 2 1 4 4 C 1.37394 * 119.78059 * 267.12397 * 3 2 1 5 5 C 1.38604 * 120.24062 * 180.02562 * 4 3 2 6 6 C 1.37686 * 120.11724 * 0.02562 * 5 4 3 7 7 C 1.39765 * 120.47938 * 359.97438 * 6 5 4 8 8 S 1.75873 * 129.71188 * 180.02562 * 7 6 5 9 9 C 1.75186 * 92.75607 * 179.97438 * 8 7 6 10 10 O 1.35244 * 124.57015 * 180.02562 * 9 8 7 11 11 C 1.37461 * 110.86339 * 359.97438 * 9 8 7 12 12 C 1.40668 * 123.23431 * 180.02562 * 11 9 8 13 13 H 1.08003 * 119.99792 * 139.30486 * 12 11 9 14 14 C 1.39555 * 120.00192 * 319.30965 * 12 11 9 15 15 N 1.31253 * 120.00223 * 343.62660 * 14 12 11 16 16 Si 1.86803 * 120.00239 * 163.62905 * 14 12 11 17 17 H 1.48500 * 109.47032 * 59.99479 * 16 14 12 18 18 H 1.48494 * 109.47678 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46880 * 300.00091 * 16 14 12 20 20 C 1.39315 * 119.65716 * 0.02562 * 7 6 5 21 21 H 1.09008 * 109.46898 * 299.99745 * 1 2 3 22 22 H 1.09002 * 109.47085 * 59.99260 * 1 2 3 23 23 H 1.08993 * 109.47125 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46927 * 240.00136 * 2 1 3 25 25 H 1.08998 * 109.47400 * 120.00351 * 2 1 3 26 26 H 1.07994 * 119.87855 * 0.27834 * 4 3 2 27 27 H 1.08000 * 119.93979 * 179.97438 * 5 4 3 28 28 H 1.08004 * 119.75818 * 180.02562 * 6 5 4 29 29 H 0.96698 * 113.99942 * 275.35463 * 10 9 8 30 30 H 0.96998 * 119.99856 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3162 2.0443 -1.1910 5 6 2.7793 3.3507 -1.2021 6 6 2.9577 4.0305 -0.0181 7 6 2.6744 3.4132 1.2034 8 16 2.8109 4.0439 2.8395 9 6 2.2428 2.5486 3.5539 10 8 2.0974 2.3394 4.8821 11 6 1.9637 1.6170 2.5824 12 6 1.4894 0.3238 2.8680 13 1 0.7178 -0.1162 2.2536 14 6 2.0157 -0.3904 3.9452 15 7 3.1494 -0.0156 4.4900 16 14 1.1068 -1.8801 4.6116 17 1 0.9704 -2.8977 3.5386 18 1 1.8692 -2.4581 5.7473 19 1 -0.2418 -1.4692 5.0782 20 6 2.2087 2.1003 1.2207 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 2.1742 1.5159 -2.1221 27 1 3.0013 3.8359 -2.1410 28 1 3.3184 5.0484 -0.0335 29 1 2.9094 2.0619 5.3278 30 1 3.5154 -0.5123 5.2385 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396320802.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:38 Heat of formation + Delta-G solvation = -17.921536 kcal Electronic energy + Delta-G solvation = -15906.837976 eV Core-core repulsion = 13371.863424 eV Total energy + Delta-G solvation = -2534.974552 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.88719 -36.37734 -33.93978 -33.25642 -32.21298 -28.79560 -27.91830 -25.36120 -22.92061 -22.36763 -20.30385 -19.64130 -17.26971 -16.66383 -15.76730 -15.26103 -14.60953 -14.44283 -13.96051 -13.46763 -13.30120 -12.84886 -12.61842 -12.24110 -11.85474 -11.59239 -11.42418 -11.29555 -11.08947 -10.70226 -10.52713 -10.21061 -10.12415 -9.80340 -9.63032 -9.02000 -8.64573 -8.25103 -7.18208 -6.85179 -6.51666 -4.41508 1.80290 2.00206 2.70522 2.99468 3.09480 3.13999 3.48316 3.61801 3.98783 4.48925 4.98753 5.43230 5.48235 5.67447 5.80006 5.93218 6.06694 6.12525 6.21988 6.33291 6.48738 6.57422 6.75551 6.82148 6.98560 7.04456 7.11556 7.20918 7.34168 7.71106 7.76427 8.32107 8.61835 8.82372 9.21203 10.26560 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.021486 B = 0.011334 C = 0.007922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.885280 B = 2469.752095 C = 3533.668622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 C -0.034 4.034 4 C -0.144 4.144 5 C -0.122 4.122 6 C -0.105 4.105 7 C -0.115 4.115 8 S -0.050 6.050 9 C -0.096 4.096 10 O -0.431 6.431 11 C 0.070 3.930 12 C -0.428 4.428 13 H 0.094 0.906 14 C 0.074 3.926 15 N -0.808 5.808 16 Si 0.910 3.090 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.265 1.265 20 C -0.046 4.046 21 H 0.065 0.935 22 H 0.044 0.956 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.105 0.895 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.111 0.889 29 H 0.344 0.656 30 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.772 0.503 -6.199 6.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.134 4.134 3 C -0.036 4.036 4 C -0.165 4.165 5 C -0.142 4.142 6 C -0.129 4.129 7 C -0.230 4.230 8 S 0.208 5.792 9 C -0.257 4.257 10 O -0.240 6.240 11 C 0.059 3.941 12 C -0.460 4.460 13 H 0.111 0.889 14 C -0.140 4.140 15 N -0.437 5.437 16 Si 0.735 3.265 17 H -0.192 1.192 18 H -0.205 1.205 19 H -0.190 1.190 20 C -0.055 4.055 21 H 0.084 0.916 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.123 0.877 26 H 0.132 0.868 27 H 0.133 0.867 28 H 0.129 0.871 29 H 0.203 0.797 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.761 1.919 -5.353 5.737 hybrid contribution 0.034 -1.970 0.043 1.971 sum -0.727 -0.051 -5.310 5.360 Atomic orbital electron populations 1.21734 0.95463 1.00893 1.01833 1.20801 0.95798 0.93220 1.03539 1.19707 0.97077 0.95768 0.91043 1.20626 1.03735 0.95355 0.96790 1.20697 1.01812 0.95031 0.96662 1.20333 1.02859 0.99202 0.90461 1.22204 1.06629 0.97688 0.96494 1.83303 1.76039 1.22285 0.97538 1.21933 1.25306 0.92043 0.86428 1.84717 1.36412 1.86764 1.16105 1.17706 0.96262 0.93264 0.86872 1.19041 1.18295 0.97966 1.10691 0.88874 1.25666 0.94003 0.98887 0.95448 1.69764 1.15553 1.38199 1.20178 0.86324 0.80598 0.80656 0.78917 1.19202 1.20540 1.18966 1.19312 0.99687 0.92288 0.94250 0.91569 0.93711 0.93161 0.92761 0.87662 0.86840 0.86696 0.87056 0.79736 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.07 37.16 0.34 -2.05 16 2 C -0.10 -1.79 5.34 -27.88 -0.15 -1.93 16 3 C -0.03 -0.70 5.19 -103.95 -0.54 -1.24 16 4 C -0.14 -2.53 9.63 -39.75 -0.38 -2.92 16 5 C -0.12 -2.06 10.03 -39.65 -0.40 -2.45 16 6 C -0.10 -1.99 10.06 -39.21 -0.39 -2.38 16 7 C -0.11 -2.58 6.41 -38.61 -0.25 -2.83 16 8 S -0.05 -1.16 23.19 -107.50 -2.49 -3.65 16 9 C -0.10 -2.51 6.98 30.45 0.21 -2.30 16 10 O -0.43 -11.25 12.10 -17.43 -0.21 -11.46 16 11 C 0.07 1.82 5.42 -105.91 -0.57 1.25 16 12 C -0.43 -10.82 6.73 -38.17 -0.26 -11.08 16 13 H 0.09 2.20 4.27 -52.48 -0.22 1.98 16 14 C 0.07 1.83 4.81 -17.31 -0.08 1.75 16 15 N -0.81 -20.38 10.60 55.53 0.59 -19.79 16 16 Si 0.91 18.85 29.59 -169.99 -5.03 13.82 16 17 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 18 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 19 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 20 C -0.05 -1.10 5.97 -105.17 -0.63 -1.73 16 21 H 0.07 1.25 6.84 -51.92 -0.36 0.89 16 22 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.86 8.06 -51.93 -0.42 0.45 16 25 H 0.11 2.21 5.40 -51.93 -0.28 1.93 16 26 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 27 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 28 H 0.11 1.84 8.06 -52.48 -0.42 1.41 16 29 H 0.34 8.49 7.59 45.56 0.35 8.84 16 30 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 LS Contribution 263.36 15.07 3.97 3.97 Total: -1.00 -27.42 263.36 -8.46 -35.88 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -2.18 Total: 9.14 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: -3.10 Total: -27.91 kcal Atomic # 7 Polarization: -20.38 SS G_CDS: 0.59 Total: -19.79 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -0.21 Total: -11.46 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Atomic # 16 Polarization: -1.16 SS G_CDS: -2.49 Total: -3.65 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -27.42 -8.46 -35.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396320802.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.955 kcal (2) G-P(sol) polarization free energy of solvation -27.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds