Wall clock time and date at job start Mon Mar 30 2020 05:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.47501 * 2 1 4 4 C 1.38971 * 119.91658 * 265.00508 * 3 2 1 5 5 C 1.35870 * 120.69462 * 179.97438 * 4 3 2 6 6 C 1.42057 * 120.58262 * 359.97438 * 5 4 3 7 7 C 1.39802 * 128.49346 * 180.30950 * 6 5 4 8 8 C 1.36954 * 115.02399 * 180.19906 * 7 6 5 9 9 C 1.39953 * 124.84597 * 179.79313 * 8 7 6 10 10 H 1.07993 * 119.99849 * 7.91549 * 9 8 7 11 11 C 1.40168 * 120.00043 * 187.92462 * 9 8 7 12 12 N 1.30773 * 119.99951 * 8.14809 * 11 9 8 13 13 Si 1.86800 * 119.99905 * 188.15515 * 11 9 8 14 14 H 1.48499 * 109.46902 * 265.01203 * 13 11 9 15 15 H 1.48494 * 109.47037 * 25.00988 * 13 11 9 16 16 H 1.48504 * 109.46909 * 145.01503 * 13 11 9 17 17 S 1.75467 * 110.30865 * 359.52258 * 8 7 6 18 18 C 1.40175 * 118.60717 * 0.02562 * 6 5 4 19 19 C 1.38077 * 119.91440 * 84.97947 * 3 2 1 20 20 O 1.35972 * 119.90223 * 0.04792 * 19 3 2 21 21 H 1.09003 * 109.47304 * 59.99421 * 1 2 3 22 22 H 1.08999 * 109.47184 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.47087 * 299.99491 * 1 2 3 24 24 H 1.09008 * 109.47087 * 240.00509 * 2 1 3 25 25 H 1.08997 * 109.47526 * 120.00187 * 2 1 3 26 26 H 1.08001 * 119.64717 * 0.02562 * 4 3 2 27 27 H 1.08004 * 119.70557 * 180.02562 * 5 4 3 28 28 H 1.08003 * 122.48604 * 359.97438 * 7 6 5 29 29 H 0.96992 * 119.99482 * 180.02562 * 12 11 9 30 30 H 0.96697 * 113.99801 * 269.93501 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3623 2.0393 -1.2000 5 6 2.8163 3.3198 -1.2184 6 6 2.9622 4.0523 -0.0101 7 6 3.4042 5.3674 0.1623 8 6 3.4422 5.8002 1.4611 9 6 3.8542 7.0745 1.8676 10 1 4.0506 7.8391 1.1306 11 6 4.0121 7.3582 3.2311 12 7 3.9309 6.3959 4.1129 13 14 4.3384 9.1109 3.7887 14 1 5.8012 9.3183 3.9389 15 1 3.8053 10.0592 2.7780 16 1 3.6683 9.3484 5.0925 17 16 2.8933 4.5318 2.5421 18 6 2.6287 3.4261 1.1989 19 6 2.1632 2.1049 1.1922 20 8 1.8392 1.4944 2.3632 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5138 0.8899 26 1 2.2560 1.4966 -2.1276 27 1 3.0677 3.7850 -2.1601 28 1 3.6976 5.9941 -0.6669 29 1 4.0398 6.5924 5.0564 30 1 0.9159 1.6114 2.6254 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396320986.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:57 Heat of formation + Delta-G solvation = -56.514168 kcal Electronic energy + Delta-G solvation = -15216.771670 eV Core-core repulsion = 12680.123616 eV Total energy + Delta-G solvation = -2536.648054 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.59132 -38.03244 -36.58688 -35.52656 -33.29213 -30.64895 -29.89402 -27.18299 -24.52561 -23.63084 -22.20291 -21.07626 -19.88799 -18.51891 -17.60997 -17.02626 -16.41235 -16.01508 -15.47191 -14.94188 -14.83185 -14.31562 -14.11705 -13.93062 -13.60095 -13.26753 -12.99503 -12.98387 -12.75714 -12.25355 -12.04663 -12.00167 -11.76431 -11.60860 -11.28435 -11.03855 -10.85788 -10.02896 -9.13274 -8.98667 -8.16604 -6.57001 0.24116 0.63033 1.24442 1.34409 1.41143 1.53322 1.79813 1.89317 2.12150 2.78446 3.17598 3.49835 4.08229 4.18856 4.40736 4.59822 4.64188 4.83063 4.87635 4.89054 4.94540 5.14348 5.15258 5.38625 5.41310 5.49399 5.51769 5.70880 5.82111 5.92953 6.04761 6.19843 6.46069 6.53050 6.93669 7.94419 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.046277 B = 0.006256 C = 0.005641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.903637 B = 4474.333702 C = 4962.889801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.062 4.062 3 C -0.175 4.175 4 C -0.085 4.085 5 C -0.168 4.168 6 C -0.001 4.001 7 C -0.395 4.395 8 C 0.028 3.972 9 C -0.419 4.419 10 H 0.103 0.897 11 C 0.019 3.981 12 N -0.799 5.799 13 Si 1.012 2.988 14 H -0.256 1.256 15 H -0.252 1.252 16 H -0.258 1.258 17 S 0.115 5.885 18 C -0.308 4.308 19 C 0.152 3.848 20 O -0.503 6.503 21 H 0.052 0.948 22 H 0.074 0.926 23 H 0.044 0.956 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.146 0.854 27 H 0.121 0.879 28 H 0.105 0.895 29 H 0.311 0.689 30 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.541 -4.486 -1.972 6.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.099 4.099 3 C -0.178 4.178 4 C -0.105 4.105 5 C -0.188 4.188 6 C -0.009 4.009 7 C -0.420 4.420 8 C -0.091 4.091 9 C -0.452 4.452 10 H 0.121 0.879 11 C -0.200 4.200 12 N -0.424 5.424 13 Si 0.830 3.170 14 H -0.180 1.180 15 H -0.175 1.175 16 H -0.182 1.182 17 S 0.375 5.625 18 C -0.423 4.423 19 C 0.103 3.897 20 O -0.314 6.314 21 H 0.071 0.929 22 H 0.093 0.907 23 H 0.063 0.937 24 H 0.099 0.901 25 H 0.081 0.919 26 H 0.164 0.836 27 H 0.139 0.861 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -4.116 -4.815 -0.195 6.337 hybrid contribution 0.083 1.125 -1.226 1.666 sum -4.033 -3.690 -1.421 5.648 Atomic orbital electron populations 1.21685 0.94237 1.02177 1.01495 1.20245 0.96499 0.90587 1.02570 1.19955 1.08039 0.98519 0.91247 1.20497 0.98356 0.93991 0.97661 1.20837 1.06282 0.95824 0.95830 1.18225 0.96112 0.93442 0.93137 1.19793 1.29059 0.97456 0.95654 1.21836 0.95391 0.97065 0.94826 1.19658 1.35674 0.95801 0.94065 0.87926 1.27334 0.91614 1.05489 0.95600 1.68935 1.32186 1.36001 1.05306 0.84708 0.79781 0.73750 0.78805 1.18050 1.17540 1.18173 1.84422 1.68561 1.04008 1.05527 1.24057 1.17343 1.00211 1.00664 1.17636 0.98825 0.87719 0.85493 1.84699 1.33763 1.74849 1.38074 0.92861 0.90735 0.93667 0.90145 0.91859 0.83592 0.86140 0.87706 0.87596 0.74923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.89 71.98 0.71 -2.47 16 2 C -0.06 -1.70 5.77 29.85 0.17 -1.53 16 3 C -0.17 -6.44 5.15 -19.73 -0.10 -6.54 16 4 C -0.08 -3.08 9.58 21.90 0.21 -2.87 16 5 C -0.17 -7.13 10.03 22.67 0.23 -6.90 16 6 C 0.00 -0.06 5.85 -21.48 -0.13 -0.19 16 7 C -0.39 -21.36 10.14 22.35 0.23 -21.14 16 8 C 0.03 1.54 6.07 22.38 0.14 1.68 16 9 C -0.42 -21.66 9.26 23.15 0.21 -21.45 16 10 H 0.10 5.01 7.86 -2.91 -0.02 4.99 16 11 C 0.02 0.88 5.47 85.32 0.47 1.34 16 12 N -0.80 -38.65 10.77 21.87 0.24 -38.41 16 13 Si 1.01 34.34 29.57 68.60 2.03 36.37 16 14 H -0.26 -8.34 7.11 99.48 0.71 -7.64 16 15 H -0.25 -8.34 7.11 99.48 0.71 -7.64 16 16 H -0.26 -8.19 7.11 99.48 0.71 -7.48 16 17 S 0.11 6.03 20.26 -56.49 -1.14 4.88 16 18 C -0.31 -15.51 6.42 23.19 0.15 -15.36 16 19 C 0.15 6.55 6.70 22.68 0.15 6.70 16 20 O -0.50 -19.21 12.57 -93.24 -1.17 -20.38 16 21 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 24 H 0.08 1.90 8.05 -2.38 -0.02 1.88 16 25 H 0.06 1.81 7.66 -2.39 -0.02 1.79 16 26 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 27 H 0.12 4.56 8.06 -2.91 -0.02 4.53 16 28 H 0.10 5.45 8.06 -2.91 -0.02 5.42 16 29 H 0.31 13.23 8.29 -92.71 -0.77 12.46 16 30 H 0.39 11.51 9.06 -74.06 -0.67 10.84 16 Total: -1.00 -62.36 274.38 2.88 -59.48 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 0.49 Total: 26.77 kcal Atomic # 6 Polarization: -71.15 SS G_CDS: 2.44 Total: -68.71 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.24 Total: -38.41 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -1.17 Total: -20.38 kcal Atomic # 14 Polarization: 34.34 SS G_CDS: 2.03 Total: 36.37 kcal Atomic # 16 Polarization: 6.03 SS G_CDS: -1.14 Total: 4.88 kcal Total: -62.36 2.88 -59.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396320986.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.969 kcal (2) G-P(sol) polarization free energy of solvation -62.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds