Wall clock time and date at job start Mon Mar 30 2020 05:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.47042 * 2 1 4 4 C 1.37697 * 119.75055 * 264.99855 * 3 2 1 5 5 C 1.38498 * 120.24945 * 179.97438 * 4 3 2 6 6 C 1.38069 * 120.19307 * 359.97438 * 5 4 3 7 7 O 1.35833 * 119.89929 * 180.02562 * 6 5 4 8 8 C 1.40989 * 120.20278 * 0.28144 * 6 5 4 9 9 C 1.46570 * 129.53373 * 180.37735 * 8 6 5 10 10 C 1.40817 * 123.30002 * 359.33299 * 9 8 6 11 11 H 1.08002 * 119.99546 * 336.95983 * 10 9 8 12 12 C 1.39676 * 120.00085 * 156.95771 * 10 9 8 13 13 N 1.31087 * 120.00104 * 348.91652 * 12 10 9 14 14 Si 1.86798 * 119.99811 * 168.91309 * 12 10 9 15 15 H 1.48497 * 109.47215 * 60.00087 * 14 12 10 16 16 H 1.48497 * 109.47136 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47304 * 299.99925 * 14 12 10 18 18 C 1.36473 * 113.40291 * 179.57858 * 9 8 6 19 19 S 1.69985 * 111.93992 * 359.75215 * 18 9 8 20 20 C 1.39309 * 119.20483 * 359.44918 * 8 6 5 21 21 H 1.08998 * 109.46992 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46916 * 300.00217 * 1 2 3 23 23 H 1.08997 * 109.46813 * 60.00219 * 1 2 3 24 24 H 1.08992 * 109.47041 * 239.99445 * 2 1 3 25 25 H 1.09005 * 109.46637 * 119.99566 * 2 1 3 26 26 H 1.07996 * 119.87494 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.90436 * 179.97438 * 5 4 3 28 28 H 0.96702 * 113.99913 * 89.99825 * 7 6 5 29 29 H 0.96998 * 119.99585 * 180.02562 * 13 12 10 30 30 H 1.08001 * 124.03322 * 179.71684 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3584 2.0303 -1.1909 5 6 2.8205 3.3358 -1.2030 6 6 2.9568 4.0351 -0.0203 7 8 3.4101 5.3155 -0.0391 8 6 2.6321 3.4226 1.2073 9 6 2.6909 3.9680 2.5665 10 6 3.1252 5.2757 2.8567 11 1 3.7684 5.7973 2.1634 12 6 2.7241 5.8982 4.0410 13 7 1.7791 5.3631 4.7752 14 14 3.5344 7.4931 4.5786 15 1 3.3226 8.5312 3.5381 16 1 2.9348 7.9457 5.8594 17 1 4.9906 7.2699 4.7659 18 6 2.2884 3.0825 3.5238 19 16 1.8246 1.5905 2.8542 20 6 2.1626 2.1110 1.2093 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.2534 1.4882 -2.1191 27 1 3.0750 3.8083 -2.1402 28 1 2.7114 5.9789 -0.1220 29 1 1.5004 5.7956 5.5974 30 1 2.2677 3.3030 4.5808 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396321056.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:00 Heat of formation + Delta-G solvation = -25.524504 kcal Electronic energy + Delta-G solvation = -15542.899064 eV Core-core repulsion = 13007.594822 eV Total energy + Delta-G solvation = -2535.304242 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.15429 -36.34057 -35.20170 -32.97106 -32.00734 -28.51320 -27.63555 -25.88365 -23.15426 -22.51140 -20.62687 -19.38960 -17.97084 -16.47436 -15.74178 -15.19817 -15.06298 -14.39633 -14.09856 -13.43557 -13.37326 -13.16638 -12.75204 -11.93853 -11.82793 -11.58472 -11.34529 -11.17846 -11.06522 -10.84589 -10.67946 -10.62228 -10.19740 -9.89720 -9.48995 -9.31176 -9.12298 -8.15197 -7.39574 -6.65730 -6.56021 -4.24116 1.78655 1.93767 2.86646 3.01974 3.11391 3.15597 3.72369 3.84345 4.03836 4.36469 4.99051 5.22216 5.35010 5.36045 5.64361 5.69477 5.70530 5.91924 6.07306 6.13569 6.38171 6.45343 6.53447 6.66843 6.93501 7.08469 7.14388 7.26757 7.44795 7.77049 8.04029 8.43763 8.57423 8.86004 8.96216 10.34534 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.028658 B = 0.008372 C = 0.006724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.788902 B = 3343.672896 C = 4163.096874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 C -0.072 4.072 4 C -0.111 4.111 5 C -0.172 4.172 6 C 0.142 3.858 7 O -0.491 6.491 8 C -0.085 4.085 9 C 0.084 3.916 10 C -0.430 4.430 11 H 0.087 0.913 12 C 0.065 3.935 13 N -0.804 5.804 14 Si 0.913 3.087 15 H -0.267 1.267 16 H -0.281 1.281 17 H -0.266 1.266 18 C -0.357 4.357 19 S 0.042 5.958 20 C -0.125 4.125 21 H 0.052 0.948 22 H 0.060 0.940 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.383 0.617 29 H 0.276 0.724 30 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.559 -4.524 -7.251 8.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.078 4.078 4 C -0.132 4.132 5 C -0.194 4.194 6 C 0.096 3.904 7 O -0.300 6.300 8 C -0.096 4.096 9 C 0.075 3.925 10 C -0.463 4.463 11 H 0.105 0.895 12 C -0.150 4.150 13 N -0.431 5.431 14 Si 0.738 3.262 15 H -0.192 1.192 16 H -0.206 1.206 17 H -0.191 1.191 18 C -0.493 4.493 19 S 0.306 5.694 20 C -0.241 4.241 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.135 0.865 27 H 0.137 0.863 28 H 0.239 0.761 29 H 0.086 0.914 30 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.667 -6.005 -6.190 8.784 hybrid contribution 0.372 2.503 -0.217 2.539 sum -1.295 -3.503 -6.408 7.416 Atomic orbital electron populations 1.21721 0.95099 1.01031 1.02431 1.20458 0.96051 0.93054 1.02127 1.19146 1.01974 0.95650 0.91038 1.20418 1.01715 0.94711 0.96345 1.20931 1.05598 0.96065 0.96824 1.18274 0.96371 0.85214 0.90530 1.84728 1.35872 1.13583 1.95843 1.20077 1.00747 0.93707 0.95054 1.17277 0.95111 0.94030 0.86076 1.19168 1.25948 0.97809 1.03420 0.89458 1.25823 0.93748 0.99293 0.96135 1.69876 1.22288 1.38535 1.12449 0.86293 0.80315 0.81390 0.78198 1.19195 1.20630 1.19100 1.24370 1.26520 0.95056 1.03339 1.81814 1.72625 1.19744 0.95245 1.22439 1.06358 0.97570 0.97733 0.92917 0.92096 0.92864 0.91581 0.91305 0.86499 0.86337 0.76085 0.91352 0.82201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.90 37.16 0.37 -1.62 16 2 C -0.08 -1.19 5.87 -27.88 -0.16 -1.35 16 3 C -0.07 -1.34 5.16 -104.22 -0.54 -1.88 16 4 C -0.11 -1.89 9.64 -39.68 -0.38 -2.28 16 5 C -0.17 -3.11 9.95 -39.55 -0.39 -3.51 16 6 C 0.14 3.05 6.75 -38.60 -0.26 2.79 16 7 O -0.49 -9.92 11.42 -19.22 -0.22 -10.14 16 8 C -0.08 -2.07 6.04 -105.10 -0.63 -2.70 16 9 C 0.08 2.26 5.68 -106.20 -0.60 1.66 16 10 C -0.43 -11.60 8.70 -38.07 -0.33 -11.93 16 11 H 0.09 2.29 6.38 -52.49 -0.33 1.96 16 12 C 0.07 1.68 5.35 -17.33 -0.09 1.58 16 13 N -0.80 -21.40 10.84 55.54 0.60 -20.80 16 14 Si 0.91 19.42 29.57 -169.99 -5.03 14.39 16 15 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 16 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 17 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 18 C -0.36 -9.50 9.50 30.10 0.29 -9.21 16 19 S 0.04 0.94 22.34 -107.50 -2.40 -1.46 16 20 C -0.13 -2.79 6.27 -38.58 -0.24 -3.03 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 22 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.07 0.84 8.04 -51.93 -0.42 0.42 16 25 H 0.07 1.05 7.75 -51.93 -0.40 0.65 16 26 H 0.12 1.59 8.05 -52.49 -0.42 1.17 16 27 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 28 H 0.38 6.22 9.06 45.56 0.41 6.63 16 29 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 30 H 0.16 4.51 6.33 -52.49 -0.33 4.18 16 LS Contribution 270.71 15.07 4.08 4.08 Total: -1.00 -29.21 270.71 -8.28 -37.49 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -2.32 Total: 7.91 kcal Atomic # 6 Polarization: -28.49 SS G_CDS: -2.99 Total: -31.48 kcal Atomic # 7 Polarization: -21.40 SS G_CDS: 0.60 Total: -20.80 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -0.22 Total: -10.14 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.39 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.40 Total: -1.46 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.21 -8.28 -37.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396321056.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.965 kcal (2) G-P(sol) polarization free energy of solvation -29.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds