Wall clock time and date at job start Mon Mar 30 2020 05:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.47042 * 2 1 4 4 C 1.37697 * 119.75055 * 264.99855 * 3 2 1 5 5 C 1.38498 * 120.24945 * 179.97438 * 4 3 2 6 6 C 1.38069 * 120.19307 * 359.97438 * 5 4 3 7 7 O 1.35833 * 119.89929 * 180.02562 * 6 5 4 8 8 C 1.40989 * 120.20278 * 0.28144 * 6 5 4 9 9 C 1.46570 * 129.53373 * 180.37735 * 8 6 5 10 10 C 1.40817 * 123.30002 * 359.33299 * 9 8 6 11 11 H 1.08002 * 119.99546 * 336.95983 * 10 9 8 12 12 C 1.39676 * 120.00085 * 156.95771 * 10 9 8 13 13 N 1.31087 * 120.00104 * 348.91652 * 12 10 9 14 14 Si 1.86798 * 119.99811 * 168.91309 * 12 10 9 15 15 H 1.48497 * 109.47215 * 60.00087 * 14 12 10 16 16 H 1.48497 * 109.47136 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47304 * 299.99925 * 14 12 10 18 18 C 1.36473 * 113.40291 * 179.57858 * 9 8 6 19 19 S 1.69985 * 111.93992 * 359.75215 * 18 9 8 20 20 C 1.39309 * 119.20483 * 359.44918 * 8 6 5 21 21 H 1.08998 * 109.46992 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46916 * 300.00217 * 1 2 3 23 23 H 1.08997 * 109.46813 * 60.00219 * 1 2 3 24 24 H 1.08992 * 109.47041 * 239.99445 * 2 1 3 25 25 H 1.09005 * 109.46637 * 119.99566 * 2 1 3 26 26 H 1.07996 * 119.87494 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.90436 * 179.97438 * 5 4 3 28 28 H 0.96702 * 113.99913 * 89.99825 * 7 6 5 29 29 H 0.96998 * 119.99585 * 180.02562 * 13 12 10 30 30 H 1.08001 * 124.03322 * 179.71684 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3584 2.0303 -1.1909 5 6 2.8205 3.3358 -1.2030 6 6 2.9568 4.0351 -0.0203 7 8 3.4101 5.3155 -0.0391 8 6 2.6321 3.4226 1.2073 9 6 2.6909 3.9680 2.5665 10 6 3.1252 5.2757 2.8567 11 1 3.7684 5.7973 2.1634 12 6 2.7241 5.8982 4.0410 13 7 1.7791 5.3631 4.7752 14 14 3.5344 7.4931 4.5786 15 1 3.3226 8.5312 3.5381 16 1 2.9348 7.9457 5.8594 17 1 4.9906 7.2699 4.7659 18 6 2.2884 3.0825 3.5238 19 16 1.8246 1.5905 2.8542 20 6 2.1626 2.1110 1.2093 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.2534 1.4882 -2.1191 27 1 3.0750 3.8083 -2.1402 28 1 2.7114 5.9789 -0.1220 29 1 1.5004 5.7956 5.5974 30 1 2.2677 3.3030 4.5808 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396321056.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:00 Heat of formation + Delta-G solvation = -43.328975 kcal Electronic energy + Delta-G solvation = -15543.671124 eV Core-core repulsion = 13007.594822 eV Total energy + Delta-G solvation = -2536.076302 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.72226 -37.83913 -37.00471 -34.56514 -33.57684 -30.18972 -29.11740 -27.82026 -24.49898 -24.13486 -22.15535 -21.14552 -19.56567 -18.38443 -17.37412 -16.87429 -16.65345 -15.88375 -15.71934 -14.93617 -14.76426 -14.53961 -14.40138 -13.49245 -13.37054 -13.10242 -12.97197 -12.84542 -12.73729 -12.62995 -12.17795 -11.82032 -11.75691 -11.54204 -11.19327 -11.05734 -10.99483 -9.80144 -9.12567 -8.57573 -8.34325 -6.25070 0.17979 0.38018 1.18672 1.29944 1.36392 1.47739 1.91511 1.99653 2.23135 2.72357 3.32478 3.56906 3.96569 4.10708 4.17168 4.42929 4.56817 4.66983 4.73292 4.98556 5.06190 5.12415 5.14408 5.29671 5.35790 5.44435 5.52969 5.63240 5.78020 6.00592 6.05362 6.57932 6.87226 6.94255 7.01199 8.41922 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.028658 B = 0.008372 C = 0.006724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.788902 B = 3343.672896 C = 4163.096874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.079 4.079 3 C -0.076 4.076 4 C -0.094 4.094 5 C -0.157 4.157 6 C 0.121 3.879 7 O -0.501 6.501 8 C -0.131 4.131 9 C 0.060 3.940 10 C -0.461 4.461 11 H 0.086 0.914 12 C 0.022 3.978 13 N -0.836 5.836 14 Si 0.986 3.014 15 H -0.255 1.255 16 H -0.272 1.272 17 H -0.267 1.267 18 C -0.398 4.398 19 S 0.064 5.936 20 C -0.138 4.138 21 H 0.078 0.922 22 H 0.033 0.967 23 H 0.063 0.937 24 H 0.102 0.898 25 H 0.060 0.940 26 H 0.168 0.832 27 H 0.155 0.845 28 H 0.397 0.603 29 H 0.281 0.719 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.497 -5.132 -10.152 11.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 C -0.082 4.082 4 C -0.114 4.114 5 C -0.179 4.179 6 C 0.075 3.925 7 O -0.312 6.312 8 C -0.141 4.141 9 C 0.051 3.949 10 C -0.493 4.493 11 H 0.104 0.896 12 C -0.191 4.191 13 N -0.464 5.464 14 Si 0.807 3.193 15 H -0.179 1.179 16 H -0.196 1.196 17 H -0.191 1.191 18 C -0.534 4.534 19 S 0.327 5.673 20 C -0.254 4.254 21 H 0.097 0.903 22 H 0.052 0.948 23 H 0.082 0.918 24 H 0.120 0.880 25 H 0.079 0.921 26 H 0.185 0.815 27 H 0.173 0.827 28 H 0.254 0.746 29 H 0.091 0.909 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.617 -6.619 -9.107 11.373 hybrid contribution 0.337 2.622 0.525 2.695 sum -1.280 -3.997 -8.581 9.553 Atomic orbital electron populations 1.21708 0.94118 1.02564 1.01627 1.20563 0.96784 0.90749 1.03508 1.19680 1.01091 0.97355 0.90076 1.21028 0.98687 0.94186 0.97549 1.21362 1.03388 0.96331 0.96770 1.18568 0.97327 0.85842 0.90769 1.84673 1.36847 1.13834 1.95866 1.20274 1.03596 0.95204 0.95040 1.17749 0.94753 0.94383 0.87983 1.19433 1.26915 0.98476 1.04524 0.89646 1.26749 0.93851 1.02837 0.95620 1.69991 1.23375 1.40124 1.12883 0.85195 0.78853 0.77057 0.78211 1.17876 1.19630 1.19144 1.24259 1.28782 0.97906 1.02406 1.81330 1.73097 1.17094 0.95820 1.22752 1.06673 0.97403 0.98547 0.90273 0.94763 0.91812 0.87989 0.92146 0.81462 0.82734 0.74570 0.90900 0.85064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 9.90 71.98 0.71 -2.74 16 2 C -0.08 -2.07 5.87 29.85 0.18 -1.90 16 3 C -0.08 -2.61 5.16 -19.60 -0.10 -2.71 16 4 C -0.09 -2.75 9.64 22.20 0.21 -2.54 16 5 C -0.16 -5.11 9.95 22.29 0.22 -4.88 16 6 C 0.12 5.10 6.75 22.90 0.15 5.25 16 7 O -0.50 -20.13 11.42 -91.67 -1.05 -21.18 16 8 C -0.13 -6.52 6.04 -20.17 -0.12 -6.64 16 9 C 0.06 3.44 5.68 -20.89 -0.12 3.32 16 10 C -0.46 -25.97 8.70 23.25 0.20 -25.77 16 11 H 0.09 4.67 6.38 -2.91 -0.02 4.65 16 12 C 0.02 1.15 5.35 85.15 0.46 1.61 16 13 N -0.84 -46.69 10.84 21.79 0.24 -46.45 16 14 Si 0.99 40.74 29.57 68.60 2.03 42.77 16 15 H -0.25 -9.93 7.11 99.48 0.71 -9.23 16 16 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 17 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 18 C -0.40 -22.55 9.50 67.41 0.64 -21.91 16 19 S 0.06 2.95 22.34 -56.49 -1.26 1.69 16 20 C -0.14 -6.15 6.27 22.92 0.14 -6.01 16 21 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 22 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.10 1.99 8.04 -2.39 -0.02 1.97 16 25 H 0.06 1.71 7.75 -2.38 -0.02 1.69 16 26 H 0.17 3.29 8.05 -2.91 -0.02 3.27 16 27 H 0.16 3.92 8.06 -2.91 -0.02 3.89 16 28 H 0.40 12.88 9.06 -74.06 -0.67 12.21 16 29 H 0.28 14.36 8.30 -92.71 -0.77 13.59 16 30 H 0.13 8.02 6.33 -2.91 -0.02 8.00 16 Total: -1.00 -67.49 270.71 3.03 -64.45 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.50 Total: 23.64 kcal Atomic # 6 Polarization: -67.49 SS G_CDS: 2.58 Total: -64.91 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 0.24 Total: -46.45 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -1.05 Total: -21.18 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Atomic # 16 Polarization: 2.95 SS G_CDS: -1.26 Total: 1.69 kcal Total: -67.49 3.03 -64.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396321056.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.123 kcal (2) G-P(sol) polarization free energy of solvation -67.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds