Wall clock time and date at job start Mon Mar 30 2020 05:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.31701 * 122.55457 * 2 1 4 4 S 1.75254 * 111.52489 * 179.97438 * 3 2 1 5 5 C 1.76007 * 92.25727 * 359.97438 * 4 3 2 6 6 C 1.40180 * 109.55744 * 0.02562 * 5 4 3 7 7 C 1.40489 * 119.03489 * 179.97438 * 6 5 4 8 8 C 1.39939 * 119.98267 * 0.02562 * 7 6 5 9 9 C 1.41273 * 120.06355 * 179.97438 * 8 7 6 10 10 H 1.07997 * 120.00657 * 204.86574 * 9 8 7 11 11 C 1.39865 * 119.99466 * 24.87285 * 9 8 7 12 12 N 1.30894 * 120.00271 * 18.02055 * 11 9 8 13 13 Si 1.86801 * 119.99705 * 198.02715 * 11 9 8 14 14 H 1.48506 * 109.46898 * 89.99513 * 13 11 9 15 15 H 1.48500 * 109.47093 * 209.99672 * 13 11 9 16 16 H 1.48498 * 109.47076 * 329.99964 * 13 11 9 17 17 C 1.41125 * 119.87914 * 359.75489 * 8 7 6 18 18 C 1.35713 * 120.10903 * 0.49881 * 17 8 7 19 19 C 1.50694 * 119.58814 * 179.77222 * 18 17 8 20 20 O 1.42892 * 109.47400 * 359.72743 * 19 18 17 21 21 H 1.08996 * 109.47067 * 90.02904 * 1 2 3 22 22 H 1.09006 * 109.46528 * 210.02832 * 1 2 3 23 23 H 1.09001 * 109.47025 * 330.02299 * 1 2 3 24 24 H 1.07997 * 124.23640 * 0.02562 * 3 2 1 25 25 H 1.07994 * 120.00829 * 180.02562 * 7 6 5 26 26 H 0.96998 * 119.99953 * 180.02562 * 12 11 9 27 27 H 1.08006 * 119.95062 * 180.25077 * 17 8 7 28 28 H 1.09004 * 109.47103 * 239.72284 * 19 18 17 29 29 H 1.08999 * 109.46993 * 119.72790 * 19 18 17 30 30 H 0.96703 * 114.00509 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.1101 0.0000 4 16 3.9359 0.7748 0.0007 5 6 3.6675 -0.9647 0.0018 6 6 2.2904 -1.2270 0.0010 7 6 1.8505 -2.5612 0.0011 8 6 2.7826 -3.6050 0.0026 9 6 2.3421 -4.9473 0.0033 10 1 2.9796 -5.7247 0.3976 11 6 1.0803 -5.2693 -0.5069 12 7 0.4569 -4.4269 -1.2912 13 14 0.2845 -6.9016 -0.0688 14 1 -0.5288 -6.7408 1.1633 15 1 -0.5900 -7.3414 -1.1854 16 1 1.3399 -7.9200 0.1642 17 6 4.1636 -3.3142 -0.0013 18 6 4.5880 -2.0252 0.0038 19 6 6.0653 -1.7282 0.0048 20 8 6.7979 -2.9551 0.0062 21 1 -0.3633 -0.0005 -1.0276 22 1 -0.3632 -0.8898 0.5143 23 1 -0.3633 0.8902 0.5135 24 1 1.7901 2.1027 0.0004 25 1 0.7932 -2.7813 0.0001 26 1 -0.4184 -4.6502 -1.6447 27 1 4.8840 -4.1189 -0.0042 28 1 6.3196 -1.1521 0.8946 29 1 6.3210 -1.1534 -0.8854 30 1 7.7580 -2.8400 0.0065 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396366087.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:47 Heat of formation + Delta-G solvation = -26.852101 kcal Electronic energy + Delta-G solvation = -15389.442822 eV Core-core repulsion = 12854.081012 eV Total energy + Delta-G solvation = -2535.361811 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.44701 -36.50563 -35.10062 -33.42319 -30.30603 -29.14282 -27.43956 -25.60173 -24.57280 -21.67598 -20.57099 -18.39098 -17.18026 -16.75691 -16.40454 -15.11459 -14.48046 -14.33594 -14.07425 -13.74528 -13.22966 -13.11194 -12.45689 -12.36427 -11.83177 -11.62005 -11.41071 -11.14511 -11.01358 -10.83761 -10.69354 -10.20527 -10.07036 -9.74596 -9.66509 -9.49249 -9.06135 -8.10585 -7.36903 -6.81412 -6.65621 -4.37001 1.92205 2.60532 2.60949 3.03527 3.05321 3.07220 3.09369 3.42679 3.90081 4.49568 4.69837 5.46755 5.49510 5.61708 5.76098 5.90445 5.98016 5.99037 6.15407 6.31015 6.51073 6.70428 6.86875 6.98035 7.11830 7.21579 7.47461 7.53321 7.75223 7.93666 7.94383 8.19417 8.53073 8.80265 8.82967 10.13012 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.020296 B = 0.008890 C = 0.006311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.279751 B = 3148.845339 C = 4435.353386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.073 4.073 3 C -0.214 4.214 4 S -0.014 6.014 5 C -0.220 4.220 6 C -0.050 4.050 7 C -0.141 4.141 8 C 0.102 3.898 9 C -0.455 4.455 10 H 0.081 0.919 11 C 0.075 3.925 12 N -0.789 5.789 13 Si 0.909 3.091 14 H -0.267 1.267 15 H -0.278 1.278 16 H -0.261 1.261 17 C -0.149 4.149 18 C -0.050 4.050 19 C 0.123 3.877 20 O -0.563 6.563 21 H 0.066 0.934 22 H 0.068 0.932 23 H 0.056 0.944 24 H 0.148 0.852 25 H 0.125 0.875 26 H 0.282 0.718 27 H 0.115 0.885 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.630 5.331 1.675 6.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 C -0.347 4.347 4 S 0.246 5.754 5 C -0.334 4.334 6 C -0.055 4.055 7 C -0.163 4.163 8 C 0.099 3.901 9 C -0.484 4.484 10 H 0.099 0.901 11 C -0.143 4.143 12 N -0.415 5.415 13 Si 0.734 3.266 14 H -0.192 1.192 15 H -0.203 1.203 16 H -0.185 1.185 17 C -0.170 4.170 18 C -0.055 4.055 19 C 0.046 3.954 20 O -0.367 6.367 21 H 0.085 0.915 22 H 0.087 0.913 23 H 0.075 0.925 24 H 0.165 0.835 25 H 0.143 0.857 26 H 0.092 0.908 27 H 0.133 0.867 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 3.063 6.064 1.520 6.962 hybrid contribution -1.085 -1.165 0.015 1.592 sum 1.978 4.899 1.535 5.502 Atomic orbital electron populations 1.20465 0.90708 1.01924 1.01931 1.19829 0.96158 0.91874 1.00720 1.24345 0.96222 1.00899 1.13248 1.83158 1.05900 1.02298 1.84076 1.21478 0.96045 0.93397 1.22485 1.18925 0.90396 0.93492 1.02721 1.21167 1.00066 0.88270 1.06795 1.17463 0.90322 0.93556 0.88777 1.19547 1.00120 0.93479 1.35271 0.90064 1.25914 0.96876 0.98986 0.92566 1.69851 1.13676 1.36292 1.21632 0.86290 0.79561 0.81758 0.79039 1.19224 1.20288 1.18524 1.20677 0.95739 0.94341 1.06221 1.18239 0.90910 0.92579 1.03734 1.20827 0.90433 0.85301 0.98864 1.86561 1.21295 1.31093 1.97724 0.91499 0.91294 0.92497 0.83478 0.85703 0.90754 0.86680 0.93520 0.93530 0.78438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.56 10.03 36.01 0.36 -1.20 16 2 C -0.07 -1.50 5.97 -103.57 -0.62 -2.11 16 3 C -0.21 -4.01 10.74 28.86 0.31 -3.70 16 4 S -0.01 -0.28 22.91 -107.50 -2.46 -2.74 16 5 C -0.22 -5.12 6.34 -38.03 -0.24 -5.36 16 6 C -0.05 -1.21 6.01 -105.40 -0.63 -1.84 16 7 C -0.14 -3.67 8.43 -38.10 -0.32 -3.99 16 8 C 0.10 2.73 5.56 -107.01 -0.59 2.14 16 9 C -0.45 -11.92 9.03 -37.82 -0.34 -12.26 16 10 H 0.08 2.05 7.91 -52.49 -0.41 1.64 16 11 C 0.07 1.85 5.12 -17.34 -0.09 1.76 16 12 N -0.79 -20.03 10.98 55.54 0.61 -19.42 16 13 Si 0.91 18.40 29.60 -169.99 -5.03 13.37 16 14 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 15 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 16 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 17 C -0.15 -3.74 9.04 -39.39 -0.36 -4.10 16 18 C -0.05 -1.16 5.87 -104.70 -0.61 -1.77 16 19 C 0.12 2.28 7.10 36.00 0.26 2.54 16 20 O -0.56 -9.75 12.06 -35.23 -0.42 -10.18 16 21 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 22 H 0.07 1.23 7.58 -51.93 -0.39 0.83 16 23 H 0.06 0.81 8.12 -51.93 -0.42 0.38 16 24 H 0.15 2.25 8.06 -52.49 -0.42 1.83 16 25 H 0.13 3.30 5.72 -52.49 -0.30 3.00 16 26 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 27 H 0.12 2.83 6.91 -52.48 -0.36 2.47 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.37 4.12 9.12 45.56 0.42 4.54 16 LS Contribution 272.23 15.07 4.10 4.10 Total: -1.00 -28.99 272.23 -8.39 -37.38 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -2.30 Total: 7.39 kcal Atomic # 6 Polarization: -27.02 SS G_CDS: -2.88 Total: -29.90 kcal Atomic # 7 Polarization: -20.03 SS G_CDS: 0.61 Total: -19.42 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: -0.42 Total: -10.18 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Atomic # 16 Polarization: -0.28 SS G_CDS: -2.46 Total: -2.74 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.99 -8.39 -37.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396366087.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.529 kcal (2) G-P(sol) polarization free energy of solvation -28.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds