Wall clock time and date at job start Mon Mar 30 2020 05:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.31701 * 122.55457 * 2 1 4 4 S 1.75254 * 111.52489 * 179.97438 * 3 2 1 5 5 C 1.76007 * 92.25727 * 359.97438 * 4 3 2 6 6 C 1.40180 * 109.55744 * 0.02562 * 5 4 3 7 7 C 1.40489 * 119.03489 * 179.97438 * 6 5 4 8 8 C 1.39939 * 119.98267 * 0.02562 * 7 6 5 9 9 C 1.41273 * 120.06355 * 179.97438 * 8 7 6 10 10 H 1.07997 * 120.00657 * 204.86574 * 9 8 7 11 11 C 1.39865 * 119.99466 * 24.87285 * 9 8 7 12 12 N 1.30894 * 120.00271 * 18.02055 * 11 9 8 13 13 Si 1.86801 * 119.99705 * 198.02715 * 11 9 8 14 14 H 1.48506 * 109.46898 * 89.99513 * 13 11 9 15 15 H 1.48500 * 109.47093 * 209.99672 * 13 11 9 16 16 H 1.48498 * 109.47076 * 329.99964 * 13 11 9 17 17 C 1.41125 * 119.87914 * 359.75489 * 8 7 6 18 18 C 1.35713 * 120.10903 * 0.49881 * 17 8 7 19 19 C 1.50694 * 119.58814 * 179.77222 * 18 17 8 20 20 O 1.42892 * 109.47400 * 359.72743 * 19 18 17 21 21 H 1.08996 * 109.47067 * 90.02904 * 1 2 3 22 22 H 1.09006 * 109.46528 * 210.02832 * 1 2 3 23 23 H 1.09001 * 109.47025 * 330.02299 * 1 2 3 24 24 H 1.07997 * 124.23640 * 0.02562 * 3 2 1 25 25 H 1.07994 * 120.00829 * 180.02562 * 7 6 5 26 26 H 0.96998 * 119.99953 * 180.02562 * 12 11 9 27 27 H 1.08006 * 119.95062 * 180.25077 * 17 8 7 28 28 H 1.09004 * 109.47103 * 239.72284 * 19 18 17 29 29 H 1.08999 * 109.46993 * 119.72790 * 19 18 17 30 30 H 0.96703 * 114.00509 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.1101 0.0000 4 16 3.9359 0.7748 0.0007 5 6 3.6675 -0.9647 0.0018 6 6 2.2904 -1.2270 0.0010 7 6 1.8505 -2.5612 0.0011 8 6 2.7826 -3.6050 0.0026 9 6 2.3421 -4.9473 0.0033 10 1 2.9796 -5.7247 0.3976 11 6 1.0803 -5.2693 -0.5069 12 7 0.4569 -4.4269 -1.2912 13 14 0.2845 -6.9016 -0.0688 14 1 -0.5288 -6.7408 1.1633 15 1 -0.5900 -7.3414 -1.1854 16 1 1.3399 -7.9200 0.1642 17 6 4.1636 -3.3142 -0.0013 18 6 4.5880 -2.0252 0.0038 19 6 6.0653 -1.7282 0.0048 20 8 6.7979 -2.9551 0.0062 21 1 -0.3633 -0.0005 -1.0276 22 1 -0.3632 -0.8898 0.5143 23 1 -0.3633 0.8902 0.5135 24 1 1.7901 2.1027 0.0004 25 1 0.7932 -2.7813 0.0001 26 1 -0.4184 -4.6502 -1.6447 27 1 4.8840 -4.1189 -0.0042 28 1 6.3196 -1.1521 0.8946 29 1 6.3210 -1.1534 -0.8854 30 1 7.7580 -2.8400 0.0065 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396366087.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:47 Heat of formation + Delta-G solvation = -44.754730 kcal Electronic energy + Delta-G solvation = -15390.219139 eV Core-core repulsion = 12854.081012 eV Total energy + Delta-G solvation = -2536.138127 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.18240 -37.95139 -36.80217 -35.17660 -32.11215 -30.81584 -28.98199 -27.40364 -26.21070 -23.40600 -22.36631 -19.98991 -18.88786 -18.48610 -17.92981 -16.86693 -16.07364 -15.91818 -15.76079 -15.34929 -14.75521 -14.69913 -14.09501 -13.98420 -13.49808 -13.17797 -13.02534 -12.75200 -12.70212 -12.51370 -12.28407 -11.84369 -11.65763 -11.52615 -11.25726 -11.22133 -10.82043 -9.81884 -9.17959 -8.65841 -8.32863 -6.31614 0.22516 0.78857 1.01988 1.36540 1.37985 1.42846 1.51125 1.70782 2.20062 2.64351 3.39022 3.59243 3.98819 4.08937 4.34776 4.39561 4.53521 4.62908 4.68227 4.82178 4.89407 5.01701 5.11357 5.26966 5.30153 5.51960 5.63989 5.73233 5.92634 6.04581 6.20107 6.61053 6.86407 6.91284 6.99687 8.30901 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.020296 B = 0.008890 C = 0.006311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.279751 B = 3148.845339 C = 4435.353386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.105 4.105 3 C -0.196 4.196 4 S 0.040 5.960 5 C -0.247 4.247 6 C -0.066 4.066 7 C -0.169 4.169 8 C 0.074 3.926 9 C -0.493 4.493 10 H 0.076 0.924 11 C 0.036 3.964 12 N -0.820 5.820 13 Si 0.983 3.017 14 H -0.261 1.261 15 H -0.266 1.266 16 H -0.259 1.259 17 C -0.176 4.176 18 C -0.056 4.056 19 C 0.130 3.870 20 O -0.581 6.581 21 H 0.070 0.930 22 H 0.050 0.950 23 H 0.092 0.908 24 H 0.192 0.808 25 H 0.110 0.890 26 H 0.289 0.711 27 H 0.109 0.891 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.863 7.178 1.873 7.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 C -0.329 4.329 4 S 0.301 5.699 5 C -0.361 4.361 6 C -0.072 4.072 7 C -0.192 4.192 8 C 0.071 3.929 9 C -0.522 4.522 10 H 0.094 0.906 11 C -0.179 4.179 12 N -0.445 5.445 13 Si 0.803 3.197 14 H -0.186 1.186 15 H -0.190 1.190 16 H -0.183 1.183 17 C -0.196 4.196 18 C -0.061 4.061 19 C 0.052 3.948 20 O -0.389 6.389 21 H 0.088 0.912 22 H 0.069 0.931 23 H 0.111 0.889 24 H 0.209 0.791 25 H 0.128 0.872 26 H 0.100 0.900 27 H 0.127 0.873 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 3.336 7.928 1.717 8.771 hybrid contribution -1.033 -1.550 -0.056 1.864 sum 2.303 6.377 1.660 6.981 Atomic orbital electron populations 1.20462 0.88701 1.02797 1.02428 1.20039 0.97868 0.90913 1.02966 1.24910 0.95887 1.02213 1.09871 1.82895 1.06070 0.97860 1.83096 1.21985 0.95951 0.96527 1.21642 1.19420 0.91935 0.94154 1.01731 1.21075 0.99240 0.89507 1.09345 1.17827 0.91427 0.94222 0.89432 1.19767 1.01684 0.93569 1.37222 0.90584 1.26750 0.96689 1.02753 0.91757 1.69905 1.14226 1.38231 1.22187 0.85192 0.78479 0.76950 0.79039 1.18591 1.19045 1.18274 1.20722 0.95106 0.95506 1.08291 1.18773 0.93913 0.91899 1.01473 1.20756 0.87647 0.85848 1.00502 1.86505 1.23765 1.30876 1.97772 0.91158 0.93119 0.88884 0.79136 0.87247 0.89997 0.87327 0.91449 0.91808 0.75229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.80 10.03 71.24 0.71 -2.09 16 2 C -0.10 -4.18 5.97 -18.66 -0.11 -4.29 16 3 C -0.20 -6.61 10.74 67.13 0.72 -5.89 16 4 S 0.04 1.44 22.91 -56.49 -1.29 0.14 16 5 C -0.25 -11.37 6.34 23.28 0.15 -11.22 16 6 C -0.07 -3.26 6.01 -20.37 -0.12 -3.38 16 7 C -0.17 -9.29 8.43 23.23 0.20 -9.09 16 8 C 0.07 4.20 5.56 -21.41 -0.12 4.08 16 9 C -0.49 -27.36 9.03 23.41 0.21 -27.15 16 10 H 0.08 4.10 7.91 -2.91 -0.02 4.08 16 11 C 0.04 1.84 5.12 85.23 0.44 2.27 16 12 N -0.82 -43.32 10.98 21.81 0.24 -43.08 16 13 Si 0.98 38.68 29.60 68.60 2.03 40.71 16 14 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 15 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 16 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 17 C -0.18 -9.20 9.04 22.39 0.20 -9.00 16 18 C -0.06 -2.61 5.87 -19.92 -0.12 -2.73 16 19 C 0.13 4.59 7.10 71.23 0.51 5.10 16 20 O -0.58 -19.46 12.06 -148.98 -1.80 -21.26 16 21 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 22 H 0.05 1.83 7.58 -2.38 -0.02 1.81 16 23 H 0.09 2.34 8.12 -2.39 -0.02 2.32 16 24 H 0.19 4.73 8.06 -2.91 -0.02 4.71 16 25 H 0.11 6.17 5.72 -2.91 -0.02 6.15 16 26 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 27 H 0.11 5.64 6.91 -2.91 -0.02 5.61 16 28 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.40 8.01 9.12 -74.06 -0.68 7.33 16 Total: -1.00 -65.58 272.23 2.34 -63.24 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.50 Total: 23.64 kcal Atomic # 6 Polarization: -66.06 SS G_CDS: 2.67 Total: -63.39 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: 0.24 Total: -43.08 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -1.80 Total: -21.26 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -1.29 Total: 0.14 kcal Total: -65.58 2.34 -63.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396366087.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.484 kcal (2) G-P(sol) polarization free energy of solvation -65.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds