Wall clock time and date at job start Mon Mar 30 2020 05:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32536 * 122.05765 * 2 1 4 4 S 1.75476 * 110.84894 * 180.02562 * 3 2 1 5 5 C 1.76059 * 91.54580 * 359.97438 * 4 3 2 6 6 C 1.40376 * 109.37106 * 359.97438 * 5 4 3 7 7 C 1.41976 * 119.00362 * 180.02562 * 6 5 4 8 8 C 1.35211 * 120.86865 * 359.97438 * 7 6 5 9 9 C 1.41234 * 120.39758 * 0.04275 * 8 7 6 10 10 C 1.40997 * 120.20116 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99336 * 206.76402 * 10 9 8 12 12 C 1.39876 * 120.00305 * 26.77283 * 10 9 8 13 13 N 1.30885 * 120.00224 * 16.18304 * 12 10 9 14 14 Si 1.86803 * 119.99969 * 196.18825 * 12 10 9 15 15 H 1.48498 * 109.47079 * 265.18402 * 14 12 10 16 16 H 1.48502 * 109.47094 * 25.18812 * 14 12 10 17 17 H 1.48496 * 109.47136 * 145.18588 * 14 12 10 18 18 C 1.38842 * 130.45490 * 180.37053 * 5 4 3 19 19 C 1.50694 * 120.01960 * 359.89844 * 18 5 4 20 20 O 1.42904 * 109.47134 * 270.29964 * 19 18 5 21 21 H 1.08990 * 109.47184 * 269.97667 * 1 2 3 22 22 H 1.09003 * 109.47158 * 29.98530 * 1 2 3 23 23 H 1.09003 * 109.46230 * 149.97644 * 1 2 3 24 24 H 1.08003 * 124.57495 * 359.97438 * 3 2 1 25 25 H 1.08003 * 119.56015 * 180.02562 * 7 6 5 26 26 H 1.08005 * 119.80108 * 180.02562 * 8 7 6 27 27 H 0.96997 * 120.00313 * 180.02562 * 13 12 10 28 28 H 1.08999 * 109.47188 * 30.29975 * 19 18 5 29 29 H 1.08997 * 109.47033 * 150.30147 * 19 18 5 30 30 H 0.96698 * 113.99869 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2104 1.1233 0.0000 4 16 3.9317 0.7822 -0.0007 5 6 3.6362 -0.9534 -0.0002 6 6 2.2526 -1.1902 0.0010 7 6 1.7834 -2.5302 0.0022 8 6 2.6496 -3.5684 0.0015 9 6 4.0428 -3.3368 0.0006 10 6 4.9423 -4.4226 0.0005 11 1 5.9302 -4.3054 0.4211 12 6 4.5554 -5.6514 -0.5445 13 7 3.5079 -5.7198 -1.3263 14 14 5.5334 -7.1948 -0.1562 15 1 6.5322 -7.4309 -1.2294 16 1 6.2332 -7.0238 1.1424 17 1 4.6124 -8.3566 -0.0729 18 6 4.5265 -2.0189 0.0064 19 6 6.0111 -1.7607 0.0125 20 8 6.4853 -1.6755 -1.3328 21 1 -0.3633 -0.0004 1.0276 22 1 -0.3634 0.8901 -0.5136 23 1 -0.3632 -0.8898 -0.5142 24 1 1.7821 2.1147 -0.0004 25 1 0.7207 -2.7226 0.0028 26 1 2.2737 -4.5810 0.0020 27 1 3.2394 -6.5719 -1.7039 28 1 6.2148 -0.8231 0.5296 29 1 6.5196 -2.5767 0.5259 30 1 7.4353 -1.5098 -1.4053 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396373919.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:51 Heat of formation + Delta-G solvation = -25.904569 kcal Electronic energy + Delta-G solvation = -15519.543676 eV Core-core repulsion = 12984.222954 eV Total energy + Delta-G solvation = -2535.320723 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.57301 -36.22665 -35.11767 -33.18070 -30.50272 -29.47616 -27.42350 -25.51042 -24.39739 -21.78993 -20.28766 -18.52060 -17.48744 -16.57624 -16.06545 -15.54734 -14.56296 -14.31328 -13.64068 -13.36062 -13.24136 -12.97516 -12.37674 -12.23694 -11.85123 -11.82809 -11.43400 -11.24218 -11.06330 -10.92150 -10.64083 -10.34168 -9.92652 -9.86431 -9.34670 -9.18914 -9.04822 -8.34020 -7.30203 -7.06772 -6.63134 -4.53453 1.92156 2.67993 2.73304 2.85436 2.95127 2.99941 3.08727 3.44262 3.75205 4.44267 5.15956 5.64704 5.68876 5.75427 6.00055 6.04431 6.07871 6.08702 6.25506 6.32558 6.56158 6.62006 6.83289 6.91689 7.08960 7.21518 7.31232 7.69440 7.71766 7.82180 7.98496 8.31412 8.46869 8.60118 8.68467 9.90710 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.028147 B = 0.008069 C = 0.006509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.536711 B = 3469.204000 C = 4300.859544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.042 4.042 3 C -0.277 4.277 4 S 0.002 5.998 5 C -0.037 4.037 6 C -0.205 4.205 7 C -0.064 4.064 8 C -0.143 4.143 9 C 0.150 3.850 10 C -0.430 4.430 11 H 0.087 0.913 12 C 0.074 3.926 13 N -0.775 5.775 14 Si 0.915 3.085 15 H -0.267 1.267 16 H -0.258 1.258 17 H -0.272 1.272 18 C -0.206 4.206 19 C 0.145 3.855 20 O -0.562 6.562 21 H 0.062 0.938 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.143 0.857 25 H 0.096 0.904 26 H 0.124 0.876 27 H 0.287 0.713 28 H 0.024 0.976 29 H 0.048 0.952 30 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.083 3.298 2.525 4.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.054 4.054 3 C -0.410 4.410 4 S 0.264 5.736 5 C -0.152 4.152 6 C -0.211 4.211 7 C -0.085 4.085 8 C -0.162 4.162 9 C 0.145 3.855 10 C -0.459 4.459 11 H 0.105 0.895 12 C -0.147 4.147 13 N -0.399 5.399 14 Si 0.738 3.262 15 H -0.192 1.192 16 H -0.181 1.181 17 H -0.197 1.197 18 C -0.215 4.215 19 C 0.068 3.932 20 O -0.366 6.366 21 H 0.081 0.919 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.161 0.839 25 H 0.114 0.886 26 H 0.142 0.858 27 H 0.098 0.902 28 H 0.042 0.958 29 H 0.066 0.934 30 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 0.359 4.010 2.246 4.610 hybrid contribution -0.315 -1.384 0.115 1.424 sum 0.044 2.626 2.362 3.532 Atomic orbital electron populations 1.20501 0.91546 1.01776 1.01398 1.18564 0.95651 0.91922 0.99228 1.24285 0.95571 1.00581 1.20523 1.83501 1.06555 1.01576 1.81995 1.22033 0.96214 0.94240 1.02734 1.17619 0.91188 0.93265 1.18991 1.20348 0.97762 0.90808 0.99585 1.20944 0.93226 0.98267 1.03751 1.17346 0.92331 0.90467 0.85403 1.19662 1.00659 0.93878 1.31686 0.89522 1.26041 0.95008 1.01047 0.92622 1.69838 1.21954 1.28193 1.19896 0.86180 0.80065 0.79657 0.80299 1.19200 1.18130 1.19721 1.18530 0.91540 0.91315 1.20110 1.20604 0.92685 0.97174 0.82697 1.86746 1.26316 1.95446 1.28045 0.91909 0.92480 0.91833 0.83937 0.88615 0.85787 0.90238 0.95752 0.93383 0.79905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.49 9.92 36.00 0.36 -1.14 16 2 C -0.04 -0.86 5.82 -105.70 -0.62 -1.47 16 3 C -0.28 -5.43 10.81 28.82 0.31 -5.12 16 4 S 0.00 0.03 22.59 -107.50 -2.43 -2.39 16 5 C -0.04 -0.91 6.29 -38.55 -0.24 -1.15 16 6 C -0.21 -4.84 5.87 -106.83 -0.63 -5.47 16 7 C -0.06 -1.51 9.58 -39.23 -0.38 -1.88 16 8 C -0.14 -3.58 8.56 -39.52 -0.34 -3.91 16 9 C 0.15 3.91 5.54 -106.90 -0.59 3.32 16 10 C -0.43 -10.77 8.42 -37.92 -0.32 -11.09 16 11 H 0.09 2.06 6.25 -52.48 -0.33 1.73 16 12 C 0.07 1.73 5.15 -17.34 -0.09 1.64 16 13 N -0.78 -18.92 11.00 55.54 0.61 -18.31 16 14 Si 0.91 17.43 29.59 -169.99 -5.03 12.40 16 15 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 16 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 17 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 18 C -0.21 -5.17 5.59 -103.59 -0.58 -5.75 16 19 C 0.15 3.16 6.63 36.00 0.24 3.40 16 20 O -0.56 -12.08 13.64 -35.23 -0.48 -12.57 16 21 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 22 H 0.06 0.80 8.11 -51.93 -0.42 0.37 16 23 H 0.06 1.00 7.31 -51.93 -0.38 0.62 16 24 H 0.14 2.36 8.06 -52.48 -0.42 1.94 16 25 H 0.10 1.96 7.38 -52.48 -0.39 1.57 16 26 H 0.12 3.10 6.25 -52.48 -0.33 2.77 16 27 H 0.29 6.28 8.30 -40.82 -0.34 5.94 16 28 H 0.02 0.49 7.60 -51.93 -0.39 0.10 16 29 H 0.05 1.00 6.24 -51.93 -0.32 0.67 16 30 H 0.36 5.47 9.12 45.56 0.42 5.88 16 LS Contribution 269.07 15.07 4.05 4.05 Total: -1.00 -28.83 269.07 -8.27 -37.10 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -2.13 Total: 8.34 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: -2.87 Total: -28.63 kcal Atomic # 7 Polarization: -18.92 SS G_CDS: 0.61 Total: -18.31 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -0.48 Total: -12.57 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.40 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -2.43 Total: -2.39 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.83 -8.27 -37.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396373919.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.200 kcal (2) G-P(sol) polarization free energy of solvation -28.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds