Wall clock time and date at job start Mon Mar 30 2020 05:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32536 * 122.05765 * 2 1 4 4 S 1.75476 * 110.84894 * 180.02562 * 3 2 1 5 5 C 1.76059 * 91.54580 * 359.97438 * 4 3 2 6 6 C 1.40376 * 109.37106 * 359.97438 * 5 4 3 7 7 C 1.41976 * 119.00362 * 180.02562 * 6 5 4 8 8 C 1.35211 * 120.86865 * 359.97438 * 7 6 5 9 9 C 1.41234 * 120.39758 * 0.04275 * 8 7 6 10 10 C 1.40997 * 120.20116 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99336 * 206.76402 * 10 9 8 12 12 C 1.39876 * 120.00305 * 26.77283 * 10 9 8 13 13 N 1.30885 * 120.00224 * 16.18304 * 12 10 9 14 14 Si 1.86803 * 119.99969 * 196.18825 * 12 10 9 15 15 H 1.48498 * 109.47079 * 265.18402 * 14 12 10 16 16 H 1.48502 * 109.47094 * 25.18812 * 14 12 10 17 17 H 1.48496 * 109.47136 * 145.18588 * 14 12 10 18 18 C 1.38842 * 130.45490 * 180.37053 * 5 4 3 19 19 C 1.50694 * 120.01960 * 359.89844 * 18 5 4 20 20 O 1.42904 * 109.47134 * 270.29964 * 19 18 5 21 21 H 1.08990 * 109.47184 * 269.97667 * 1 2 3 22 22 H 1.09003 * 109.47158 * 29.98530 * 1 2 3 23 23 H 1.09003 * 109.46230 * 149.97644 * 1 2 3 24 24 H 1.08003 * 124.57495 * 359.97438 * 3 2 1 25 25 H 1.08003 * 119.56015 * 180.02562 * 7 6 5 26 26 H 1.08005 * 119.80108 * 180.02562 * 8 7 6 27 27 H 0.96997 * 120.00313 * 180.02562 * 13 12 10 28 28 H 1.08999 * 109.47188 * 30.29975 * 19 18 5 29 29 H 1.08997 * 109.47033 * 150.30147 * 19 18 5 30 30 H 0.96698 * 113.99869 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2104 1.1233 0.0000 4 16 3.9317 0.7822 -0.0007 5 6 3.6362 -0.9534 -0.0002 6 6 2.2526 -1.1902 0.0010 7 6 1.7834 -2.5302 0.0022 8 6 2.6496 -3.5684 0.0015 9 6 4.0428 -3.3368 0.0006 10 6 4.9423 -4.4226 0.0005 11 1 5.9302 -4.3054 0.4211 12 6 4.5554 -5.6514 -0.5445 13 7 3.5079 -5.7198 -1.3263 14 14 5.5334 -7.1948 -0.1562 15 1 6.5322 -7.4309 -1.2294 16 1 6.2332 -7.0238 1.1424 17 1 4.6124 -8.3566 -0.0729 18 6 4.5265 -2.0189 0.0064 19 6 6.0111 -1.7607 0.0125 20 8 6.4853 -1.6755 -1.3328 21 1 -0.3633 -0.0004 1.0276 22 1 -0.3634 0.8901 -0.5136 23 1 -0.3632 -0.8898 -0.5142 24 1 1.7821 2.1147 -0.0004 25 1 0.7207 -2.7226 0.0028 26 1 2.2737 -4.5810 0.0020 27 1 3.2394 -6.5719 -1.7039 28 1 6.2148 -0.8231 0.5296 29 1 6.5196 -2.5767 0.5259 30 1 7.4353 -1.5098 -1.4053 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396373919.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:51 Heat of formation + Delta-G solvation = -43.633666 kcal Electronic energy + Delta-G solvation = -15520.312468 eV Core-core repulsion = 12984.222954 eV Total energy + Delta-G solvation = -2536.089514 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.31094 -37.88768 -36.82778 -34.90388 -32.29190 -31.16121 -28.93151 -27.23765 -26.11933 -23.54438 -22.05345 -20.18286 -19.23907 -18.25060 -17.76887 -17.24399 -16.25673 -16.04222 -15.29010 -14.86786 -14.82135 -14.59506 -14.03250 -13.90337 -13.43003 -13.35189 -12.98991 -12.86546 -12.72133 -12.53935 -12.20959 -11.95364 -11.60090 -11.55873 -11.08948 -10.94024 -10.72229 -10.08566 -9.09794 -8.80708 -8.32978 -6.38118 0.22385 0.86143 1.00478 1.32271 1.38993 1.43554 1.53416 1.78303 2.16685 2.67636 3.42322 3.99664 4.16388 4.24261 4.37085 4.47202 4.56893 4.67266 4.80657 4.86308 4.91285 5.04624 5.10055 5.17209 5.42321 5.46597 5.57321 5.90696 5.98281 6.02017 6.16923 6.48511 6.77479 6.84696 7.08621 8.19864 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.028147 B = 0.008069 C = 0.006509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.536711 B = 3469.204000 C = 4300.859544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.061 4.061 3 C -0.263 4.263 4 S 0.019 5.981 5 C -0.074 4.074 6 C -0.219 4.219 7 C -0.068 4.068 8 C -0.164 4.164 9 C 0.119 3.881 10 C -0.462 4.462 11 H 0.088 0.912 12 C 0.035 3.965 13 N -0.810 5.810 14 Si 0.988 3.012 15 H -0.264 1.264 16 H -0.254 1.254 17 H -0.263 1.263 18 C -0.232 4.232 19 C 0.152 3.848 20 O -0.584 6.584 21 H 0.079 0.921 22 H 0.083 0.917 23 H 0.061 0.939 24 H 0.181 0.819 25 H 0.120 0.880 26 H 0.115 0.885 27 H 0.294 0.706 28 H 0.039 0.961 29 H 0.051 0.949 30 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.447 4.310 2.758 5.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.072 4.072 3 C -0.395 4.395 4 S 0.281 5.719 5 C -0.189 4.189 6 C -0.225 4.225 7 C -0.089 4.089 8 C -0.184 4.184 9 C 0.114 3.886 10 C -0.490 4.490 11 H 0.106 0.894 12 C -0.183 4.183 13 N -0.435 5.435 14 Si 0.807 3.193 15 H -0.188 1.188 16 H -0.177 1.177 17 H -0.187 1.187 18 C -0.241 4.241 19 C 0.075 3.925 20 O -0.391 6.391 21 H 0.098 0.902 22 H 0.102 0.898 23 H 0.080 0.920 24 H 0.198 0.802 25 H 0.137 0.863 26 H 0.133 0.867 27 H 0.105 0.895 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 0.008 5.042 2.478 5.618 hybrid contribution -0.251 -1.489 0.022 1.510 sum -0.243 3.553 2.500 4.351 Atomic orbital electron populations 1.20558 0.88322 1.03050 1.02855 1.18926 0.98073 0.90765 0.99449 1.24814 0.94562 1.02103 1.18043 1.83347 1.08040 0.98871 1.81681 1.22459 0.96864 0.96233 1.03350 1.18120 0.91687 0.94403 1.18312 1.20616 0.98795 0.90747 0.98693 1.20979 0.93603 0.98388 1.05433 1.17727 0.93036 0.91516 0.86357 1.19880 1.00941 0.94958 1.33208 0.89378 1.26900 0.95929 1.03661 0.91761 1.69880 1.23471 1.29386 1.20726 0.85102 0.78551 0.75583 0.80038 1.18827 1.17707 1.18678 1.18980 0.93458 0.91467 1.20146 1.20512 0.91206 0.97908 0.82894 1.86659 1.28897 1.95562 1.27971 0.90248 0.89831 0.91994 0.80193 0.86254 0.86707 0.89466 0.94300 0.93082 0.76924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.56 9.92 71.24 0.71 -1.85 16 2 C -0.06 -2.34 5.82 -20.47 -0.12 -2.46 16 3 C -0.26 -9.45 10.81 66.67 0.72 -8.73 16 4 S 0.02 0.75 22.59 -56.49 -1.28 -0.53 16 5 C -0.07 -3.61 6.29 22.94 0.14 -3.47 16 6 C -0.22 -10.26 5.87 -21.30 -0.12 -10.38 16 7 C -0.07 -3.23 9.58 22.50 0.22 -3.01 16 8 C -0.16 -8.56 8.56 22.31 0.19 -8.36 16 9 C 0.12 6.42 5.54 -21.34 -0.12 6.30 16 10 C -0.46 -23.85 8.42 23.34 0.20 -23.66 16 11 H 0.09 4.33 6.25 -2.91 -0.02 4.31 16 12 C 0.03 1.67 5.15 85.23 0.44 2.11 16 13 N -0.81 -40.63 11.00 21.82 0.24 -40.39 16 14 Si 0.99 35.96 29.59 68.60 2.03 37.99 16 15 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 16 H -0.25 -8.96 7.11 99.48 0.71 -8.25 16 17 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 18 C -0.23 -11.89 5.59 -19.20 -0.11 -12.00 16 19 C 0.15 6.65 6.63 71.23 0.47 7.12 16 20 O -0.58 -25.06 13.64 -148.98 -2.03 -27.09 16 21 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 22 H 0.08 1.96 8.11 -2.39 -0.02 1.94 16 23 H 0.06 1.80 7.31 -2.39 -0.02 1.78 16 24 H 0.18 5.07 8.06 -2.91 -0.02 5.04 16 25 H 0.12 4.87 7.38 -2.91 -0.02 4.84 16 26 H 0.12 6.02 6.25 -2.91 -0.02 6.00 16 27 H 0.29 13.18 8.30 -92.71 -0.77 12.41 16 28 H 0.04 1.55 7.60 -2.39 -0.02 1.54 16 29 H 0.05 2.16 6.24 -2.39 -0.01 2.14 16 30 H 0.38 11.42 9.12 -74.06 -0.68 10.75 16 Total: -1.00 -62.98 269.07 2.08 -60.90 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: 0.51 Total: 27.52 kcal Atomic # 6 Polarization: -61.01 SS G_CDS: 2.62 Total: -58.40 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.24 Total: -40.39 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -2.03 Total: -27.09 kcal Atomic # 14 Polarization: 35.96 SS G_CDS: 2.03 Total: 37.99 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -1.28 Total: -0.53 kcal Total: -62.98 2.08 -60.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396373919.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.264 kcal (2) G-P(sol) polarization free energy of solvation -62.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds