Wall clock time and date at job start Mon Mar 30 2020 05:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36949 * 122.48635 * 2 1 4 4 C 1.39920 * 124.82359 * 0.04198 * 3 2 1 5 5 H 1.07995 * 120.00354 * 0.02562 * 4 3 2 6 6 C 1.40187 * 119.99518 * 180.02562 * 4 3 2 7 7 N 1.30760 * 120.00405 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99773 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47143 * 90.00043 * 8 6 4 10 10 H 1.48505 * 109.47064 * 209.99845 * 8 6 4 11 11 H 1.48500 * 109.47226 * 329.99584 * 8 6 4 12 12 S 1.75457 * 110.34561 * 180.02562 * 3 2 1 13 13 C 1.75980 * 91.78546 * 359.97438 * 12 3 2 14 14 C 1.39643 * 130.26694 * 180.02562 * 13 12 3 15 15 C 1.37662 * 120.28676 * 180.02562 * 14 13 12 16 16 C 1.38969 * 120.23305 * 359.95637 * 15 14 13 17 17 C 1.35918 * 120.65730 * 0.02562 * 16 15 14 18 18 C 1.50698 * 119.76384 * 179.97438 * 17 16 15 19 19 O 1.42899 * 109.47087 * 5.47055 * 18 17 16 20 20 C 1.39796 * 122.48884 * 180.02562 * 2 1 3 21 21 H 1.09007 * 109.47093 * 263.33178 * 1 2 3 22 22 H 1.08999 * 109.47243 * 23.33161 * 1 2 3 23 23 H 1.09000 * 109.47416 * 143.33272 * 1 2 3 24 24 H 0.96996 * 120.00265 * 180.02562 * 7 6 4 25 25 H 1.08001 * 119.86020 * 0.02562 * 14 13 12 26 26 H 1.08000 * 119.88229 * 179.97438 * 15 14 13 27 27 H 1.08002 * 119.67449 * 179.74513 * 16 15 14 28 28 H 1.09001 * 109.46962 * 125.47207 * 18 17 16 29 29 H 1.09003 * 109.47219 * 245.46690 * 18 17 16 30 30 H 0.96700 * 113.99817 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.1552 0.0000 4 6 1.7028 2.4461 0.0008 5 1 0.6316 2.5836 0.0020 6 6 2.5526 3.5610 0.0002 7 7 3.8496 3.3946 -0.0017 8 14 1.8321 5.2845 0.0021 9 1 1.6431 5.7405 1.4026 10 1 2.7589 6.2092 -0.6988 11 1 0.5216 5.2739 -0.6962 12 16 3.9579 0.7862 -0.0007 13 6 3.6415 -0.9450 -0.0002 14 6 4.5275 -2.0244 0.0000 15 6 4.0491 -3.3152 -0.0001 16 6 2.6801 -3.5541 0.0004 17 6 1.7964 -2.5214 0.0005 18 6 0.3160 -2.8035 0.0004 19 8 0.0992 -4.2101 0.1287 20 6 2.2579 -1.1792 -0.0005 21 1 -0.3634 -0.1193 1.0208 22 1 -0.3634 0.9436 -0.4070 23 1 -0.3634 -0.8243 -0.6137 24 1 4.4375 4.1661 -0.0017 25 1 5.5926 -1.8458 0.0004 26 1 4.7401 -4.1452 -0.0003 27 1 2.3146 -4.5704 -0.0040 28 1 -0.1525 -2.2858 0.8374 29 1 -0.1208 -2.4523 -0.9345 30 1 -0.8335 -4.4652 0.1363 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396385117.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:53 Heat of formation + Delta-G solvation = -54.662404 kcal Electronic energy + Delta-G solvation = -15444.999128 eV Core-core repulsion = 12908.431372 eV Total energy + Delta-G solvation = -2536.567756 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.36282 -37.55894 -36.95127 -35.20283 -32.38091 -30.92823 -29.42814 -27.58041 -25.44002 -23.58197 -22.20104 -20.35291 -19.20585 -18.04330 -17.62698 -17.16904 -16.04768 -15.94552 -15.57265 -15.37290 -14.73909 -14.38055 -14.28724 -13.55854 -13.47911 -13.27311 -13.14134 -13.02992 -12.70160 -12.32214 -12.02207 -11.90272 -11.54913 -11.30480 -11.19920 -10.90526 -10.85864 -9.90724 -9.15131 -8.88704 -8.14467 -6.44961 0.33228 0.73334 1.33228 1.35620 1.47088 1.53529 1.87131 1.93990 2.14604 2.89253 3.23396 3.46330 4.13096 4.32846 4.44828 4.54142 4.56428 4.69152 4.83480 4.92656 5.01666 5.05859 5.12444 5.31916 5.48184 5.50268 5.66676 5.82632 5.86767 6.02599 6.17190 6.38482 6.58916 6.63080 6.99178 7.97690 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.032384 B = 0.007590 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.421335 B = 3688.194075 C = 4531.574935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C -0.363 4.363 3 C 0.028 3.972 4 C -0.408 4.408 5 H 0.108 0.892 6 C 0.015 3.985 7 N -0.802 5.802 8 Si 1.010 2.990 9 H -0.258 1.258 10 H -0.262 1.262 11 H -0.251 1.251 12 S 0.105 5.895 13 C -0.292 4.292 14 C -0.069 4.069 15 C -0.190 4.190 16 C -0.093 4.093 17 C -0.144 4.144 18 C 0.137 3.863 19 O -0.583 6.583 20 C 0.004 3.996 21 H 0.037 0.963 22 H 0.046 0.954 23 H 0.060 0.940 24 H 0.310 0.690 25 H 0.118 0.882 26 H 0.138 0.862 27 H 0.131 0.869 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.271 -2.556 -0.188 4.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.369 4.369 3 C -0.091 4.091 4 C -0.441 4.441 5 H 0.125 0.875 6 C -0.203 4.203 7 N -0.429 5.429 8 Si 0.828 3.172 9 H -0.182 1.182 10 H -0.186 1.186 11 H -0.174 1.174 12 S 0.367 5.633 13 C -0.406 4.406 14 C -0.091 4.091 15 C -0.210 4.210 16 C -0.113 4.113 17 C -0.145 4.145 18 C 0.060 3.940 19 O -0.392 6.392 20 C -0.004 4.004 21 H 0.056 0.944 22 H 0.065 0.935 23 H 0.078 0.922 24 H 0.123 0.877 25 H 0.136 0.864 26 H 0.156 0.844 27 H 0.148 0.852 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -2.100 -1.559 -0.182 2.622 hybrid contribution -1.646 -0.112 0.028 1.650 sum -3.746 -1.671 -0.154 4.105 Atomic orbital electron populations 1.20124 0.90497 1.00713 0.99348 1.18740 0.96606 0.90025 1.31562 1.21627 0.94478 0.96942 0.96018 1.19676 0.96457 0.88942 1.39007 0.87455 1.27294 0.94580 1.07228 0.91221 1.68693 1.05319 1.36305 1.32533 0.84728 0.79401 0.73087 0.79952 1.18227 1.18632 1.17441 1.84601 1.07311 0.91816 1.79597 1.23866 0.97492 1.01982 1.17281 1.20513 0.97826 0.91548 0.99235 1.20943 0.95655 0.95791 1.08654 1.20423 0.92873 0.98709 0.99278 1.19538 0.95617 0.91418 1.07960 1.20897 0.92230 0.81187 0.99653 1.86372 1.32593 1.23068 1.97125 1.17912 0.92064 0.93011 0.97393 0.94408 0.93502 0.92180 0.87652 0.86427 0.84393 0.85160 0.92492 0.92227 0.75266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.99 8.34 71.23 0.59 -1.39 16 2 C -0.36 -18.16 5.95 -19.79 -0.12 -18.27 16 3 C 0.03 1.51 6.11 22.37 0.14 1.64 16 4 C -0.41 -20.15 8.83 23.15 0.20 -19.94 16 5 H 0.11 4.96 6.52 -2.91 -0.02 4.94 16 6 C 0.02 0.69 5.50 85.33 0.47 1.16 16 7 N -0.80 -37.90 10.58 21.87 0.23 -37.67 16 8 Si 1.01 33.69 29.56 68.60 2.03 35.72 16 9 H -0.26 -8.34 7.11 99.48 0.71 -7.63 16 10 H -0.26 -8.29 7.11 99.48 0.71 -7.58 16 11 H -0.25 -8.09 7.11 99.48 0.71 -7.38 16 12 S 0.11 5.42 20.13 -56.49 -1.14 4.28 16 13 C -0.29 -14.64 6.48 23.12 0.15 -14.49 16 14 C -0.07 -3.02 10.06 22.47 0.23 -2.80 16 15 C -0.19 -7.49 10.04 22.31 0.22 -7.27 16 16 C -0.09 -3.77 9.29 21.91 0.20 -3.56 16 17 C -0.14 -6.25 5.92 -19.49 -0.12 -6.37 16 18 C 0.14 4.77 5.56 71.24 0.40 5.16 16 19 O -0.58 -17.12 12.09 -148.98 -1.80 -18.92 16 20 C 0.00 0.20 5.82 -21.48 -0.13 0.08 16 21 H 0.04 1.46 7.86 -2.38 -0.02 1.44 16 22 H 0.05 1.88 6.60 -2.39 -0.02 1.86 16 23 H 0.06 2.19 4.95 -2.39 -0.01 2.17 16 24 H 0.31 12.98 8.29 -92.71 -0.77 12.21 16 25 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 26 H 0.14 4.39 8.06 -2.91 -0.02 4.36 16 27 H 0.13 4.76 6.92 -2.91 -0.02 4.74 16 28 H 0.06 1.94 6.82 -2.39 -0.02 1.92 16 29 H 0.06 1.97 6.58 -2.39 -0.02 1.96 16 30 H 0.40 6.96 9.12 -74.06 -0.68 6.28 16 Total: -1.00 -60.85 261.38 2.08 -58.77 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: 0.51 Total: 23.88 kcal Atomic # 6 Polarization: -68.30 SS G_CDS: 2.25 Total: -66.06 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.23 Total: -37.67 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -1.80 Total: -18.92 kcal Atomic # 14 Polarization: 33.69 SS G_CDS: 2.03 Total: 35.72 kcal Atomic # 16 Polarization: 5.42 SS G_CDS: -1.14 Total: 4.28 kcal Total: -60.85 2.08 -58.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396385117.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.109 kcal (2) G-P(sol) polarization free energy of solvation -60.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds