Wall clock time and date at job start Mon Mar 30 2020 05:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32532 * 122.05796 * 2 1 4 4 S 1.75478 * 110.83840 * 179.97438 * 3 2 1 5 5 C 1.76055 * 91.54689 * 359.97438 * 4 3 2 6 6 C 1.38869 * 130.45459 * 180.02562 * 5 4 3 7 7 C 1.40363 * 119.96980 * 179.97438 * 6 5 4 8 8 C 1.40999 * 120.20720 * 180.02562 * 7 6 5 9 9 H 1.07998 * 119.99977 * 208.82099 * 8 7 6 10 10 C 1.39880 * 119.99803 * 28.81238 * 8 7 6 11 11 N 1.30886 * 120.00053 * 10.82096 * 10 8 7 12 12 Si 1.86796 * 119.99957 * 190.82111 * 10 8 7 13 13 H 1.48500 * 109.47124 * 90.00356 * 12 10 8 14 14 H 1.48496 * 109.47285 * 210.00409 * 12 10 8 15 15 H 1.48499 * 109.47188 * 330.00269 * 12 10 8 16 16 C 1.41264 * 119.58833 * 0.02562 * 7 6 5 17 17 C 1.35190 * 120.39927 * 0.02562 * 16 7 6 18 18 C 1.50697 * 119.56859 * 179.97438 * 17 16 7 19 19 O 1.42903 * 109.47089 * 353.61891 * 18 17 16 20 20 C 1.40350 * 109.37289 * 359.76689 * 5 4 3 21 21 H 1.08993 * 109.46695 * 95.96093 * 1 2 3 22 22 H 1.08997 * 109.47189 * 335.95773 * 1 2 3 23 23 H 1.09003 * 109.46648 * 215.95636 * 1 2 3 24 24 H 1.08002 * 124.58313 * 359.97438 * 3 2 1 25 25 H 1.08000 * 120.02105 * 0.02562 * 6 5 4 26 26 H 0.96995 * 119.99914 * 179.97438 * 11 10 8 27 27 H 1.08004 * 119.80025 * 179.97438 * 16 7 6 28 28 H 1.09002 * 109.47223 * 113.61242 * 18 17 16 29 29 H 1.08995 * 109.47321 * 233.61771 * 18 17 16 30 30 H 0.96696 * 113.99867 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2105 1.1232 0.0000 4 16 3.9317 0.7818 0.0007 5 6 3.6359 -0.9537 0.0018 6 6 4.5262 -2.0195 0.0033 7 6 4.0425 -3.3372 0.0045 8 6 4.9419 -4.4230 0.0065 9 1 4.6557 -5.3621 -0.4435 10 6 6.2050 -4.2838 0.5912 11 7 6.4772 -3.2299 1.3180 12 14 7.5034 -5.6020 0.3346 13 1 8.3023 -5.2811 -0.8753 14 1 8.3976 -5.6532 1.5190 15 1 6.8424 -6.9198 0.1562 16 6 2.6490 -3.5686 0.0036 17 6 1.7830 -2.5304 0.0011 18 6 0.3002 -2.7989 -0.0003 19 8 0.0702 -4.2015 -0.1485 20 6 2.2525 -1.1902 0.0070 21 1 -0.3632 -0.1067 -1.0221 22 1 -0.3633 0.9385 0.4187 23 1 -0.3633 -0.8319 0.6034 24 1 1.7823 2.1147 -0.0004 25 1 5.5903 -1.8347 0.0043 26 1 7.3529 -3.1336 1.7237 27 1 2.2730 -4.5811 0.0041 28 1 -0.1319 -2.4573 0.9403 29 1 -0.1649 -2.2649 -0.8289 30 1 -0.8648 -4.4479 -0.1574 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396392651.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:21 Heat of formation + Delta-G solvation = -21.320395 kcal Electronic energy + Delta-G solvation = -15474.026641 eV Core-core repulsion = 12938.904703 eV Total energy + Delta-G solvation = -2535.121938 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.83735 -36.24993 -35.45709 -33.14545 -30.71593 -29.43967 -27.36706 -25.55685 -24.60225 -21.52186 -20.56362 -18.76949 -17.29989 -16.72049 -16.27768 -15.11481 -14.66972 -14.34490 -14.16908 -13.71848 -13.16282 -13.14213 -12.40465 -12.16001 -11.91216 -11.73034 -11.55332 -11.35081 -11.08824 -10.81890 -10.52396 -10.17099 -10.11743 -9.79336 -9.64584 -9.38446 -9.08326 -8.26425 -7.29897 -6.87739 -6.54788 -4.46155 1.87547 2.73296 2.78746 2.93894 3.01917 3.05333 3.12083 3.47006 3.83673 4.47205 4.71263 5.37843 5.54957 5.59061 5.72296 5.86529 5.93762 5.96101 6.01651 6.24981 6.48400 6.79968 6.87762 6.99698 7.07438 7.24773 7.32532 7.72578 7.74780 7.85760 7.93777 8.14881 8.42802 8.69877 8.75079 10.04912 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.022861 B = 0.008366 C = 0.006239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.498844 B = 3346.122000 C = 4487.107743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.047 4.047 3 C -0.269 4.269 4 S -0.002 6.002 5 C -0.070 4.070 6 C -0.155 4.155 7 C 0.121 3.879 8 C -0.438 4.438 9 H 0.085 0.915 10 C 0.069 3.931 11 N -0.784 5.784 12 Si 0.917 3.083 13 H -0.266 1.266 14 H -0.276 1.276 15 H -0.260 1.260 16 C -0.163 4.163 17 C -0.041 4.041 18 C 0.120 3.880 19 O -0.567 6.567 20 C -0.196 4.196 21 H 0.063 0.937 22 H 0.056 0.944 23 H 0.069 0.931 24 H 0.143 0.857 25 H 0.126 0.874 26 H 0.284 0.716 27 H 0.114 0.886 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.167 2.116 -1.399 7.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.059 4.059 3 C -0.402 4.402 4 S 0.260 5.740 5 C -0.184 4.184 6 C -0.181 4.181 7 C 0.115 3.885 8 C -0.468 4.468 9 H 0.103 0.897 10 C -0.150 4.150 11 N -0.408 5.408 12 Si 0.741 3.259 13 H -0.191 1.191 14 H -0.201 1.201 15 H -0.184 1.184 16 C -0.182 4.182 17 C -0.044 4.044 18 C 0.043 3.957 19 O -0.371 6.371 20 C -0.202 4.202 21 H 0.081 0.919 22 H 0.075 0.925 23 H 0.088 0.912 24 H 0.161 0.839 25 H 0.143 0.857 26 H 0.095 0.905 27 H 0.132 0.868 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -5.072 3.213 -1.254 6.134 hybrid contribution -1.139 -1.152 0.075 1.621 sum -6.211 2.061 -1.179 6.650 Atomic orbital electron populations 1.20846 0.91935 1.02029 1.01519 1.18510 0.95389 0.91998 1.00015 1.24275 0.95757 1.00472 1.19658 1.83614 1.06181 1.01727 1.82484 1.22237 0.96170 0.94988 1.05039 1.20669 0.98224 0.89882 1.09369 1.17539 0.91097 0.92334 0.87543 1.19643 0.97374 0.98759 1.31014 0.89719 1.26013 0.99309 0.96775 0.92943 1.69826 1.22638 1.26735 1.21623 0.86160 0.79821 0.81094 0.78856 1.19112 1.20092 1.18393 1.20629 0.92913 0.97747 1.06905 1.18793 0.92457 0.91634 1.01494 1.21208 0.95023 0.80913 0.98563 1.86569 1.29384 1.24287 1.96845 1.17271 0.91656 0.91794 1.19437 0.91859 0.92496 0.91242 0.83948 0.85662 0.90468 0.86769 0.93109 0.93035 0.78490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.57 8.55 36.01 0.31 -1.26 16 2 C -0.05 -0.94 5.82 -105.70 -0.62 -1.55 16 3 C -0.27 -5.21 10.79 28.82 0.31 -4.90 16 4 S 0.00 -0.04 23.29 -107.50 -2.50 -2.55 16 5 C -0.07 -1.73 6.46 -38.55 -0.25 -1.98 16 6 C -0.16 -4.13 8.68 -38.55 -0.33 -4.47 16 7 C 0.12 3.21 5.54 -106.90 -0.59 2.62 16 8 C -0.44 -11.34 9.04 -37.92 -0.34 -11.68 16 9 H 0.08 2.08 7.87 -52.49 -0.41 1.67 16 10 C 0.07 1.68 5.24 -17.34 -0.09 1.59 16 11 N -0.78 -20.00 10.84 55.54 0.60 -19.40 16 12 Si 0.92 18.21 29.57 -169.99 -5.03 13.18 16 13 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 14 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 15 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 16 C -0.16 -4.02 9.01 -39.52 -0.36 -4.37 16 17 C -0.04 -0.93 5.90 -104.26 -0.61 -1.55 16 18 C 0.12 2.08 5.54 36.00 0.20 2.28 16 19 O -0.57 -9.37 12.07 -35.23 -0.43 -9.80 16 20 C -0.20 -4.55 5.85 -106.83 -0.62 -5.18 16 21 H 0.06 0.87 7.86 -51.93 -0.41 0.46 16 22 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 23 H 0.07 0.99 4.87 -51.93 -0.25 0.73 16 24 H 0.14 2.32 8.06 -52.49 -0.42 1.90 16 25 H 0.13 3.45 6.20 -52.49 -0.33 3.12 16 26 H 0.28 6.58 8.30 -40.82 -0.34 6.25 16 27 H 0.11 2.75 6.91 -52.48 -0.36 2.39 16 28 H 0.05 0.80 6.62 -51.93 -0.34 0.46 16 29 H 0.05 0.80 6.74 -51.93 -0.35 0.45 16 30 H 0.37 3.84 9.12 45.56 0.42 4.25 16 LS Contribution 264.15 15.07 3.98 3.98 Total: -1.00 -29.11 264.15 -8.39 -37.51 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -2.02 Total: 7.53 kcal Atomic # 6 Polarization: -27.45 SS G_CDS: -3.00 Total: -30.46 kcal Atomic # 7 Polarization: -20.00 SS G_CDS: 0.60 Total: -19.40 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -0.43 Total: -9.80 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -2.50 Total: -2.55 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.11 -8.39 -37.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396392651.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.187 kcal (2) G-P(sol) polarization free energy of solvation -29.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds