Wall clock time and date at job start Mon Mar 30 2020 05:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32532 * 122.05796 * 2 1 4 4 S 1.75478 * 110.83840 * 179.97438 * 3 2 1 5 5 C 1.76055 * 91.54689 * 359.97438 * 4 3 2 6 6 C 1.38869 * 130.45459 * 180.02562 * 5 4 3 7 7 C 1.40363 * 119.96980 * 179.97438 * 6 5 4 8 8 C 1.40999 * 120.20720 * 180.02562 * 7 6 5 9 9 H 1.07998 * 119.99977 * 208.82099 * 8 7 6 10 10 C 1.39880 * 119.99803 * 28.81238 * 8 7 6 11 11 N 1.30886 * 120.00053 * 10.82096 * 10 8 7 12 12 Si 1.86796 * 119.99957 * 190.82111 * 10 8 7 13 13 H 1.48500 * 109.47124 * 90.00356 * 12 10 8 14 14 H 1.48496 * 109.47285 * 210.00409 * 12 10 8 15 15 H 1.48499 * 109.47188 * 330.00269 * 12 10 8 16 16 C 1.41264 * 119.58833 * 0.02562 * 7 6 5 17 17 C 1.35190 * 120.39927 * 0.02562 * 16 7 6 18 18 C 1.50697 * 119.56859 * 179.97438 * 17 16 7 19 19 O 1.42903 * 109.47089 * 353.61891 * 18 17 16 20 20 C 1.40350 * 109.37289 * 359.76689 * 5 4 3 21 21 H 1.08993 * 109.46695 * 95.96093 * 1 2 3 22 22 H 1.08997 * 109.47189 * 335.95773 * 1 2 3 23 23 H 1.09003 * 109.46648 * 215.95636 * 1 2 3 24 24 H 1.08002 * 124.58313 * 359.97438 * 3 2 1 25 25 H 1.08000 * 120.02105 * 0.02562 * 6 5 4 26 26 H 0.96995 * 119.99914 * 179.97438 * 11 10 8 27 27 H 1.08004 * 119.80025 * 179.97438 * 16 7 6 28 28 H 1.09002 * 109.47223 * 113.61242 * 18 17 16 29 29 H 1.08995 * 109.47321 * 233.61771 * 18 17 16 30 30 H 0.96696 * 113.99867 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2105 1.1232 0.0000 4 16 3.9317 0.7818 0.0007 5 6 3.6359 -0.9537 0.0018 6 6 4.5262 -2.0195 0.0033 7 6 4.0425 -3.3372 0.0045 8 6 4.9419 -4.4230 0.0065 9 1 4.6557 -5.3621 -0.4435 10 6 6.2050 -4.2838 0.5912 11 7 6.4772 -3.2299 1.3180 12 14 7.5034 -5.6020 0.3346 13 1 8.3023 -5.2811 -0.8753 14 1 8.3976 -5.6532 1.5190 15 1 6.8424 -6.9198 0.1562 16 6 2.6490 -3.5686 0.0036 17 6 1.7830 -2.5304 0.0011 18 6 0.3002 -2.7989 -0.0003 19 8 0.0702 -4.2015 -0.1485 20 6 2.2525 -1.1902 0.0070 21 1 -0.3632 -0.1067 -1.0221 22 1 -0.3633 0.9385 0.4187 23 1 -0.3633 -0.8319 0.6034 24 1 1.7823 2.1147 -0.0004 25 1 5.5903 -1.8347 0.0043 26 1 7.3529 -3.1336 1.7237 27 1 2.2730 -4.5811 0.0041 28 1 -0.1319 -2.4573 0.9403 29 1 -0.1649 -2.2649 -0.8289 30 1 -0.8648 -4.4479 -0.1574 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396392651.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:20 Heat of formation + Delta-G solvation = -39.850751 kcal Electronic energy + Delta-G solvation = -15474.830178 eV Core-core repulsion = 12938.904703 eV Total energy + Delta-G solvation = -2535.925474 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.53329 -37.59930 -37.18401 -34.90399 -32.36101 -31.19184 -28.83562 -27.34056 -26.14165 -23.29399 -22.32942 -20.36353 -19.09443 -18.08051 -18.03136 -16.82344 -16.10911 -15.97880 -15.83424 -15.32481 -14.74175 -14.50431 -13.99579 -13.79555 -13.46989 -13.31187 -13.12412 -12.95564 -12.67925 -12.55682 -12.04816 -11.82522 -11.66903 -11.48198 -11.21746 -11.13247 -10.76380 -9.98975 -9.13531 -8.69603 -8.28690 -6.40412 0.17915 0.89319 0.99547 1.33035 1.36909 1.44978 1.50877 1.79067 2.16918 2.66113 3.50195 3.52155 4.07934 4.23756 4.36757 4.44308 4.55908 4.68796 4.80455 4.89921 4.96791 5.02427 5.10724 5.24814 5.36071 5.43312 5.60752 5.89134 5.96658 6.09010 6.12930 6.51903 6.79036 6.86078 7.07627 8.25627 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.022861 B = 0.008366 C = 0.006239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.498844 B = 3346.122000 C = 4487.107743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.060 4.060 3 C -0.252 4.252 4 S -0.004 6.004 5 C -0.104 4.104 6 C -0.184 4.184 7 C 0.092 3.908 8 C -0.478 4.478 9 H 0.084 0.916 10 C 0.028 3.972 11 N -0.822 5.822 12 Si 0.991 3.009 13 H -0.261 1.261 14 H -0.266 1.266 15 H -0.254 1.254 16 C -0.187 4.187 17 C -0.045 4.045 18 C 0.127 3.873 19 O -0.588 6.588 20 C -0.201 4.201 21 H 0.082 0.918 22 H 0.084 0.916 23 H 0.079 0.921 24 H 0.184 0.816 25 H 0.102 0.898 26 H 0.290 0.710 27 H 0.112 0.888 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.535 3.088 -1.559 10.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.071 4.071 3 C -0.384 4.384 4 S 0.258 5.742 5 C -0.218 4.218 6 C -0.210 4.210 7 C 0.087 3.913 8 C -0.507 4.507 9 H 0.102 0.898 10 C -0.187 4.187 11 N -0.448 5.448 12 Si 0.811 3.189 13 H -0.186 1.186 14 H -0.191 1.191 15 H -0.177 1.177 16 C -0.206 4.206 17 C -0.047 4.047 18 C 0.050 3.950 19 O -0.396 6.396 20 C -0.207 4.207 21 H 0.100 0.900 22 H 0.102 0.898 23 H 0.097 0.903 24 H 0.201 0.799 25 H 0.120 0.880 26 H 0.100 0.900 27 H 0.130 0.870 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -7.479 4.183 -1.417 8.686 hybrid contribution -0.568 -1.257 0.115 1.384 sum -8.047 2.926 -1.302 8.661 Atomic orbital electron populations 1.20939 0.87797 1.04062 1.03189 1.18911 0.98281 0.90333 0.99583 1.24817 0.93867 1.02340 1.17406 1.83577 1.08939 0.99387 1.82304 1.22637 0.97303 0.96540 1.05351 1.20521 0.97488 0.90969 1.12023 1.17891 0.92468 0.92714 0.88249 1.19878 0.98934 0.98921 1.33004 0.89754 1.26913 1.00906 0.99010 0.91896 1.69907 1.23427 1.28739 1.22703 0.85060 0.76756 0.78095 0.78984 1.18607 1.19088 1.17715 1.20706 0.92641 0.98519 1.08764 1.19382 0.95586 0.90894 0.98865 1.21197 0.91214 0.81819 1.00776 1.86507 1.32336 1.23855 1.96924 1.17829 0.91389 0.93519 1.17967 0.89957 0.89759 0.90272 0.79907 0.88010 0.89954 0.87019 0.90719 0.90312 0.75215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.49 8.55 71.24 0.61 -1.88 16 2 C -0.06 -2.17 5.82 -20.47 -0.12 -2.29 16 3 C -0.25 -8.88 10.79 66.68 0.72 -8.16 16 4 S 0.00 -0.16 23.29 -56.49 -1.32 -1.48 16 5 C -0.10 -5.28 6.46 22.94 0.15 -5.13 16 6 C -0.18 -10.39 8.68 22.94 0.20 -10.20 16 7 C 0.09 5.20 5.54 -21.34 -0.12 5.08 16 8 C -0.48 -26.25 9.04 23.34 0.21 -26.04 16 9 H 0.08 4.41 7.87 -2.91 -0.02 4.39 16 10 C 0.03 1.43 5.24 85.23 0.45 1.87 16 11 N -0.82 -44.36 10.84 21.82 0.24 -44.13 16 12 Si 0.99 38.59 29.57 68.60 2.03 40.62 16 13 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 14 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 15 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 16 C -0.19 -9.54 9.01 22.31 0.20 -9.34 16 17 C -0.04 -2.01 5.90 -19.63 -0.12 -2.12 16 18 C 0.13 4.00 5.54 71.24 0.39 4.40 16 19 O -0.59 -18.06 12.07 -148.98 -1.80 -19.85 16 20 C -0.20 -9.14 5.85 -21.29 -0.12 -9.27 16 21 H 0.08 1.77 7.86 -2.39 -0.02 1.75 16 22 H 0.08 1.65 8.08 -2.39 -0.02 1.64 16 23 H 0.08 1.81 4.87 -2.39 -0.01 1.80 16 24 H 0.18 4.95 8.06 -2.91 -0.02 4.93 16 25 H 0.10 6.07 6.20 -2.91 -0.02 6.05 16 26 H 0.29 14.12 8.30 -92.71 -0.77 13.35 16 27 H 0.11 5.59 6.91 -2.91 -0.02 5.57 16 28 H 0.08 2.04 6.62 -2.39 -0.02 2.03 16 29 H 0.08 2.09 6.74 -2.39 -0.02 2.07 16 30 H 0.40 6.94 9.12 -74.06 -0.68 6.26 16 Total: -1.00 -67.28 264.15 2.11 -65.17 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.51 Total: 22.74 kcal Atomic # 6 Polarization: -65.52 SS G_CDS: 2.45 Total: -63.07 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.24 Total: -44.13 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -1.80 Total: -19.85 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 2.03 Total: 40.62 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -1.32 Total: -1.48 kcal Total: -67.28 2.11 -65.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396392651.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.321 kcal (2) G-P(sol) polarization free energy of solvation -67.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds