Wall clock time and date at job start Mon Mar 30 2020 05:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32719 * 122.09754 * 2 1 4 4 C 1.50696 * 124.66704 * 0.03697 * 3 2 1 5 5 O 1.42904 * 109.47415 * 90.26889 * 4 3 2 6 6 S 1.75509 * 110.66856 * 180.29644 * 3 2 1 7 7 C 1.76071 * 91.51286 * 359.73911 * 6 3 2 8 8 C 1.39644 * 130.61264 * 180.02562 * 7 6 3 9 9 C 1.38112 * 121.44185 * 180.02562 * 8 7 6 10 10 C 1.37652 * 121.08783 * 359.95281 * 9 8 7 11 11 C 1.40318 * 120.14307 * 0.02562 * 10 9 8 12 12 C 1.40576 * 120.40579 * 180.02562 * 11 10 9 13 13 H 1.08006 * 119.99934 * 147.29425 * 12 11 10 14 14 C 1.40002 * 120.00021 * 327.29046 * 12 11 10 15 15 N 1.30832 * 120.00018 * 350.52144 * 14 12 11 16 16 Si 1.86807 * 120.00000 * 170.52128 * 14 12 11 17 17 H 1.48494 * 109.46991 * 90.00019 * 16 14 12 18 18 H 1.48491 * 109.46997 * 210.00223 * 16 14 12 19 19 H 1.48500 * 109.46808 * 330.00355 * 16 14 12 20 20 C 1.39735 * 109.31203 * 359.97438 * 7 6 3 21 21 H 1.08995 * 109.47442 * 264.26429 * 1 2 3 22 22 H 1.08997 * 109.46927 * 24.26651 * 1 2 3 23 23 H 1.08999 * 109.46938 * 144.26254 * 1 2 3 24 24 H 1.08994 * 109.47314 * 210.27129 * 4 3 2 25 25 H 1.09006 * 109.47069 * 330.27295 * 4 3 2 26 26 H 0.96698 * 113.99811 * 180.02562 * 5 4 3 27 27 H 1.07997 * 119.28098 * 359.97096 * 8 7 6 28 28 H 1.08002 * 119.45402 * 179.97438 * 9 8 7 29 29 H 1.08007 * 119.92894 * 180.02562 * 10 9 8 30 30 H 0.96997 * 120.00084 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2123 1.1243 0.0000 4 6 1.6177 2.5090 0.0008 5 8 1.4363 2.9489 1.3483 6 16 3.9325 0.7766 -0.0085 7 6 3.6294 -0.9579 -0.0039 8 6 4.5171 -2.0358 -0.0063 9 6 4.0655 -3.3410 -0.0023 10 6 2.7190 -3.6272 0.0052 11 6 1.7775 -2.5868 0.0083 12 6 0.4012 -2.8728 0.0165 13 1 -0.2849 -2.2111 0.5244 14 6 -0.0802 -4.0154 -0.6338 15 7 0.7150 -4.7149 -1.4019 16 14 -1.8581 -4.5412 -0.4048 17 1 -2.7023 -3.8977 -1.4432 18 1 -1.9578 -6.0174 -0.5306 19 1 -2.3274 -4.1262 0.9416 20 6 2.2508 -1.1860 0.0043 21 1 -0.3634 -0.1027 1.0224 22 1 -0.3633 0.9368 -0.4223 23 1 -0.3633 -0.8342 -0.6002 24 1 2.2896 3.1932 -0.5173 25 1 0.6540 2.4910 -0.5083 26 1 1.0561 3.8346 1.4251 27 1 5.5800 -1.8447 -0.0123 28 1 4.7805 -4.1504 -0.0047 29 1 2.3866 -4.6549 0.0086 30 1 0.3816 -5.5067 -1.8522 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396395430.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:25 Heat of formation + Delta-G solvation = -21.037851 kcal Electronic energy + Delta-G solvation = -15506.028439 eV Core-core repulsion = 12970.918753 eV Total energy + Delta-G solvation = -2535.109686 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.37942 -36.65093 -34.66100 -33.83980 -30.04106 -29.33162 -27.76538 -25.97959 -23.97729 -21.46802 -20.52550 -18.30118 -17.66636 -17.13433 -15.99892 -15.38451 -14.89974 -14.22896 -13.88579 -13.47894 -13.17472 -12.88281 -12.63680 -12.08277 -11.76110 -11.67708 -11.52522 -11.26208 -10.95990 -10.89463 -10.56369 -10.25569 -9.82719 -9.64421 -9.58173 -9.45322 -9.35797 -8.04903 -7.26121 -6.98272 -6.65921 -4.51764 1.82604 2.64508 2.66708 2.94339 2.98176 3.04160 3.08787 3.49102 3.74297 4.42495 4.86792 5.39613 5.47533 5.59524 5.78771 6.01266 6.13918 6.22992 6.44246 6.51891 6.53528 6.81122 6.86245 6.92884 7.11987 7.24247 7.39390 7.72710 7.78161 7.86587 7.90836 7.98977 8.38754 8.56984 8.70547 9.92477 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.023168 B = 0.008853 C = 0.006617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.249004 B = 3162.043160 C = 4230.763817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.002 3.998 3 C -0.262 4.262 4 C 0.164 3.836 5 O -0.567 6.567 6 S 0.004 5.996 7 C -0.066 4.066 8 C -0.226 4.226 9 C -0.062 4.062 10 C -0.186 4.186 11 C 0.159 3.841 12 C -0.439 4.439 13 H 0.095 0.905 14 C 0.071 3.929 15 N -0.778 5.778 16 Si 0.914 3.086 17 H -0.266 1.266 18 H -0.273 1.273 19 H -0.257 1.257 20 C -0.186 4.186 21 H 0.065 0.935 22 H 0.047 0.953 23 H 0.090 0.910 24 H 0.042 0.958 25 H 0.056 0.944 26 H 0.368 0.632 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.121 0.879 30 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.921 5.890 0.487 6.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.009 4.009 3 C -0.376 4.376 4 C 0.086 3.914 5 O -0.372 6.372 6 S 0.267 5.733 7 C -0.181 4.181 8 C -0.252 4.252 9 C -0.083 4.083 10 C -0.208 4.208 11 C 0.154 3.846 12 C -0.467 4.467 13 H 0.113 0.887 14 C -0.150 4.150 15 N -0.401 5.401 16 Si 0.737 3.263 17 H -0.191 1.191 18 H -0.198 1.198 19 H -0.181 1.181 20 C -0.191 4.191 21 H 0.083 0.917 22 H 0.066 0.934 23 H 0.109 0.891 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.214 0.786 27 H 0.110 0.890 28 H 0.114 0.886 29 H 0.139 0.861 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.398 6.072 0.431 6.100 hybrid contribution -1.980 -0.623 -0.205 2.086 sum -2.378 5.449 0.226 5.950 Atomic orbital electron populations 1.20895 0.91226 1.02042 1.02155 1.18414 0.96171 0.91012 0.95350 1.22677 0.95045 0.96512 1.23392 1.20184 0.97701 0.90572 0.82981 1.86682 1.86439 1.36607 1.27457 1.83316 1.06374 1.01166 1.82412 1.22199 0.96832 0.94569 1.04520 1.19550 0.96121 0.91104 1.18430 1.20513 0.95836 0.94339 0.97581 1.21026 0.91312 0.99163 1.09260 1.18436 0.93253 0.87522 0.85368 1.19816 0.93345 1.05834 1.27669 0.88749 1.26068 1.00748 0.94966 0.93184 1.69803 1.37414 1.13597 1.19311 0.86191 0.81167 0.78557 0.80342 1.19083 1.19808 1.18075 1.19039 0.90669 0.93729 1.15708 0.91668 0.93411 0.89121 0.93942 0.92617 0.78621 0.89039 0.88567 0.86135 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.06 8.32 36.01 0.30 -1.76 16 2 C 0.00 0.05 5.81 -105.85 -0.62 -0.56 16 3 C -0.26 -5.54 6.06 -36.19 -0.22 -5.76 16 4 C 0.16 2.73 7.15 36.00 0.26 2.99 16 5 O -0.57 -9.18 13.64 -35.23 -0.48 -9.66 16 6 S 0.00 0.08 23.27 -107.50 -2.50 -2.42 16 7 C -0.07 -1.62 6.49 -38.50 -0.25 -1.87 16 8 C -0.23 -5.30 10.02 -39.10 -0.39 -5.69 16 9 C -0.06 -1.43 9.95 -39.84 -0.40 -1.83 16 10 C -0.19 -4.68 8.60 -39.01 -0.34 -5.01 16 11 C 0.16 4.13 5.69 -104.29 -0.59 3.53 16 12 C -0.44 -10.76 7.25 -38.04 -0.28 -11.03 16 13 H 0.09 2.19 5.50 -52.48 -0.29 1.90 16 14 C 0.07 1.64 5.25 -17.32 -0.09 1.55 16 15 N -0.78 -18.74 11.05 55.55 0.61 -18.12 16 16 Si 0.91 17.24 29.57 -169.99 -5.03 12.21 16 17 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 18 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 19 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 20 C -0.19 -4.69 6.02 -104.74 -0.63 -5.32 16 21 H 0.06 1.24 7.99 -51.93 -0.41 0.83 16 22 H 0.05 0.80 6.29 -51.93 -0.33 0.47 16 23 H 0.09 1.86 5.73 -51.93 -0.30 1.57 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.83 6.44 -51.93 -0.33 0.49 16 26 H 0.37 3.71 9.12 45.56 0.42 4.12 16 27 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 28 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 29 H 0.12 3.05 6.47 -52.48 -0.34 2.71 16 30 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 LS Contribution 265.55 15.07 4.00 4.00 Total: -1.00 -28.52 265.55 -8.62 -37.14 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -1.99 Total: 7.60 kcal Atomic # 6 Polarization: -27.52 SS G_CDS: -3.24 Total: -30.76 kcal Atomic # 7 Polarization: -18.74 SS G_CDS: 0.61 Total: -18.12 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -0.48 Total: -9.66 kcal Atomic # 14 Polarization: 17.24 SS G_CDS: -5.03 Total: 12.21 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -2.50 Total: -2.42 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -28.52 -8.62 -37.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396395430.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.105 kcal (2) G-P(sol) polarization free energy of solvation -28.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds