Wall clock time and date at job start Mon Mar 30 2020 05:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32719 * 122.09754 * 2 1 4 4 C 1.50696 * 124.66704 * 0.03697 * 3 2 1 5 5 O 1.42904 * 109.47415 * 90.26889 * 4 3 2 6 6 S 1.75509 * 110.66856 * 180.29644 * 3 2 1 7 7 C 1.76071 * 91.51286 * 359.73911 * 6 3 2 8 8 C 1.39644 * 130.61264 * 180.02562 * 7 6 3 9 9 C 1.38112 * 121.44185 * 180.02562 * 8 7 6 10 10 C 1.37652 * 121.08783 * 359.95281 * 9 8 7 11 11 C 1.40318 * 120.14307 * 0.02562 * 10 9 8 12 12 C 1.40576 * 120.40579 * 180.02562 * 11 10 9 13 13 H 1.08006 * 119.99934 * 147.29425 * 12 11 10 14 14 C 1.40002 * 120.00021 * 327.29046 * 12 11 10 15 15 N 1.30832 * 120.00018 * 350.52144 * 14 12 11 16 16 Si 1.86807 * 120.00000 * 170.52128 * 14 12 11 17 17 H 1.48494 * 109.46991 * 90.00019 * 16 14 12 18 18 H 1.48491 * 109.46997 * 210.00223 * 16 14 12 19 19 H 1.48500 * 109.46808 * 330.00355 * 16 14 12 20 20 C 1.39735 * 109.31203 * 359.97438 * 7 6 3 21 21 H 1.08995 * 109.47442 * 264.26429 * 1 2 3 22 22 H 1.08997 * 109.46927 * 24.26651 * 1 2 3 23 23 H 1.08999 * 109.46938 * 144.26254 * 1 2 3 24 24 H 1.08994 * 109.47314 * 210.27129 * 4 3 2 25 25 H 1.09006 * 109.47069 * 330.27295 * 4 3 2 26 26 H 0.96698 * 113.99811 * 180.02562 * 5 4 3 27 27 H 1.07997 * 119.28098 * 359.97096 * 8 7 6 28 28 H 1.08002 * 119.45402 * 179.97438 * 9 8 7 29 29 H 1.08007 * 119.92894 * 180.02562 * 10 9 8 30 30 H 0.96997 * 120.00084 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2123 1.1243 0.0000 4 6 1.6177 2.5090 0.0008 5 8 1.4363 2.9489 1.3483 6 16 3.9325 0.7766 -0.0085 7 6 3.6294 -0.9579 -0.0039 8 6 4.5171 -2.0358 -0.0063 9 6 4.0655 -3.3410 -0.0023 10 6 2.7190 -3.6272 0.0052 11 6 1.7775 -2.5868 0.0083 12 6 0.4012 -2.8728 0.0165 13 1 -0.2849 -2.2111 0.5244 14 6 -0.0802 -4.0154 -0.6338 15 7 0.7150 -4.7149 -1.4019 16 14 -1.8581 -4.5412 -0.4048 17 1 -2.7023 -3.8977 -1.4432 18 1 -1.9578 -6.0174 -0.5306 19 1 -2.3274 -4.1262 0.9416 20 6 2.2508 -1.1860 0.0043 21 1 -0.3634 -0.1027 1.0224 22 1 -0.3633 0.9368 -0.4223 23 1 -0.3633 -0.8342 -0.6002 24 1 2.2896 3.1932 -0.5173 25 1 0.6540 2.4910 -0.5083 26 1 1.0561 3.8346 1.4251 27 1 5.5800 -1.8447 -0.0123 28 1 4.7805 -4.1504 -0.0047 29 1 2.3866 -4.6549 0.0086 30 1 0.3816 -5.5067 -1.8522 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396395430.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:25 Heat of formation + Delta-G solvation = -38.437102 kcal Electronic energy + Delta-G solvation = -15506.782927 eV Core-core repulsion = 12970.918753 eV Total energy + Delta-G solvation = -2535.864174 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.10468 -38.03442 -36.27879 -35.58619 -31.84176 -31.00282 -29.32317 -27.71078 -25.59432 -23.26177 -22.25807 -20.01561 -19.39529 -18.34937 -17.72875 -17.02862 -16.50121 -15.89043 -15.55747 -14.96200 -14.82151 -14.51027 -14.21741 -13.73904 -13.43613 -13.19128 -13.17195 -12.86776 -12.66478 -12.43205 -12.08922 -11.91914 -11.54614 -11.36874 -11.21413 -11.07983 -10.85434 -9.84678 -9.05128 -8.72575 -8.41111 -6.35523 0.08616 0.87023 0.94175 1.34008 1.40106 1.48661 1.54693 1.73528 2.16936 2.65754 3.54335 3.66126 4.12524 4.29016 4.31652 4.41715 4.55131 4.69747 4.79417 4.81293 4.92329 5.09955 5.10577 5.21362 5.36874 5.45737 5.65814 5.96356 5.99406 6.03074 6.15529 6.56200 6.75342 6.87159 6.99763 8.22126 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.023168 B = 0.008853 C = 0.006617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.249004 B = 3162.043160 C = 4230.763817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.032 4.032 3 C -0.254 4.254 4 C 0.165 3.835 5 O -0.586 6.586 6 S 0.032 5.968 7 C -0.100 4.100 8 C -0.237 4.237 9 C -0.065 4.065 10 C -0.212 4.212 11 C 0.129 3.871 12 C -0.460 4.460 13 H 0.100 0.900 14 C 0.033 3.967 15 N -0.810 5.810 16 Si 0.985 3.015 17 H -0.258 1.258 18 H -0.267 1.267 19 H -0.254 1.254 20 C -0.209 4.209 21 H 0.066 0.934 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.397 0.603 27 H 0.111 0.889 28 H 0.123 0.877 29 H 0.109 0.891 30 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.964 7.506 0.511 8.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.043 4.043 3 C -0.369 4.369 4 C 0.086 3.914 5 O -0.395 6.395 6 S 0.296 5.704 7 C -0.215 4.215 8 C -0.263 4.263 9 C -0.086 4.086 10 C -0.234 4.234 11 C 0.124 3.876 12 C -0.488 4.488 13 H 0.118 0.882 14 C -0.184 4.184 15 N -0.434 5.434 16 Si 0.805 3.195 17 H -0.182 1.182 18 H -0.191 1.191 19 H -0.177 1.177 20 C -0.215 4.215 21 H 0.085 0.915 22 H 0.096 0.904 23 H 0.094 0.906 24 H 0.082 0.918 25 H 0.097 0.903 26 H 0.247 0.753 27 H 0.129 0.871 28 H 0.141 0.859 29 H 0.127 0.873 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.426 7.717 0.458 7.861 hybrid contribution -1.564 -0.972 -0.204 1.853 sum -2.990 6.744 0.254 7.382 Atomic orbital electron populations 1.20822 0.89380 1.03042 1.02180 1.18722 0.97832 0.90690 0.97085 1.23414 0.94764 0.98521 1.20193 1.20265 0.99083 0.88272 0.83729 1.86586 1.86982 1.39077 1.26892 1.83090 1.06965 0.98650 1.81703 1.22638 0.97100 0.96708 1.05044 1.19851 0.97124 0.91086 1.18213 1.20793 0.95709 0.95370 0.96729 1.21047 0.92342 0.98665 1.11376 1.18829 0.94275 0.88283 0.86245 1.20050 0.93144 1.07061 1.28496 0.88223 1.26929 1.04944 0.94338 0.92222 1.69860 1.39496 1.14143 1.19927 0.85136 0.75699 0.78314 0.80374 1.18236 1.19097 1.17733 1.19484 0.91703 0.94489 1.15841 0.91548 0.90351 0.90605 0.91768 0.90295 0.75299 0.87055 0.85949 0.87272 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.65 8.32 71.24 0.59 -3.06 16 2 C -0.03 -1.43 5.81 -20.61 -0.12 -1.54 16 3 C -0.25 -10.26 6.06 24.51 0.15 -10.11 16 4 C 0.17 4.89 7.15 71.23 0.51 5.40 16 5 O -0.59 -16.83 13.64 -148.98 -2.03 -18.86 16 6 S 0.03 1.33 23.27 -56.49 -1.31 0.01 16 7 C -0.10 -4.91 6.49 22.97 0.15 -4.76 16 8 C -0.24 -11.19 10.02 22.58 0.23 -10.96 16 9 C -0.07 -3.09 9.95 22.10 0.22 -2.87 16 10 C -0.21 -11.11 8.60 22.64 0.19 -10.92 16 11 C 0.13 6.89 5.69 -19.65 -0.11 6.77 16 12 C -0.46 -23.10 7.25 23.27 0.17 -22.93 16 13 H 0.10 4.71 5.50 -2.91 -0.02 4.70 16 14 C 0.03 1.55 5.25 85.27 0.45 1.99 16 15 N -0.81 -39.95 11.05 21.84 0.24 -39.71 16 16 Si 0.99 35.13 29.57 68.60 2.03 37.16 16 17 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 18 H -0.27 -9.13 7.11 99.48 0.71 -8.42 16 19 H -0.25 -8.83 7.11 99.48 0.71 -8.12 16 20 C -0.21 -10.73 6.02 -19.94 -0.12 -10.85 16 21 H 0.07 2.47 7.99 -2.39 -0.02 2.45 16 22 H 0.08 2.42 6.29 -2.39 -0.02 2.40 16 23 H 0.08 3.10 5.73 -2.39 -0.01 3.09 16 24 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.08 1.99 6.44 -2.38 -0.02 1.98 16 26 H 0.40 6.33 9.12 -74.06 -0.68 5.65 16 27 H 0.11 4.65 8.06 -2.91 -0.02 4.62 16 28 H 0.12 4.94 8.06 -2.91 -0.02 4.92 16 29 H 0.11 5.80 6.47 -2.91 -0.02 5.79 16 30 H 0.29 12.99 8.30 -92.71 -0.77 12.22 16 Total: -1.00 -62.20 265.55 1.74 -60.46 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: 0.51 Total: 24.78 kcal Atomic # 6 Polarization: -66.14 SS G_CDS: 2.31 Total: -63.84 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.24 Total: -39.71 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -2.03 Total: -18.86 kcal Atomic # 14 Polarization: 35.13 SS G_CDS: 2.03 Total: 37.16 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -1.31 Total: 0.01 kcal Total: -62.20 1.74 -60.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396395430.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.021 kcal (2) G-P(sol) polarization free energy of solvation -62.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds