Wall clock time and date at job start Mon Mar 30 2020 05:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.32529 * 122.05915 * 2 1 4 4 S 1.75477 * 110.83937 * 180.02562 * 3 2 1 5 5 C 1.76047 * 91.54431 * 359.97438 * 4 3 2 6 6 C 1.38880 * 130.45795 * 180.02562 * 5 4 3 7 7 C 1.40357 * 119.97230 * 180.02562 * 6 5 4 8 8 C 1.40992 * 120.20588 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00601 * 205.67670 * 8 7 6 10 10 C 1.39885 * 120.00161 * 25.68052 * 8 7 6 11 11 N 1.30885 * 120.00391 * 205.38915 * 10 8 7 12 12 Si 1.86803 * 119.99614 * 25.38730 * 10 8 7 13 13 H 1.48493 * 109.47316 * 263.80782 * 12 10 8 14 14 H 1.48507 * 109.47051 * 23.80888 * 12 10 8 15 15 H 1.48498 * 109.46903 * 143.80385 * 12 10 8 16 16 C 1.41268 * 119.59076 * 0.27663 * 7 6 5 17 17 C 1.50707 * 119.80261 * 179.70567 * 16 7 6 18 18 O 1.42901 * 109.47042 * 179.97438 * 17 16 7 19 19 C 1.35187 * 120.39601 * 359.42911 * 16 7 6 20 20 C 1.40348 * 109.37912 * 0.02562 * 5 4 3 21 21 H 1.09000 * 109.46814 * 269.98016 * 1 2 3 22 22 H 1.08995 * 109.46861 * 29.98235 * 1 2 3 23 23 H 1.08999 * 109.46439 * 149.98089 * 1 2 3 24 24 H 1.08005 * 124.58464 * 0.03595 * 3 2 1 25 25 H 1.07997 * 120.01736 * 359.97438 * 6 5 4 26 26 H 0.97000 * 119.99867 * 353.07427 * 11 10 8 27 27 H 1.09007 * 109.46804 * 299.99745 * 17 16 7 28 28 H 1.08998 * 109.46968 * 59.99290 * 17 16 7 29 29 H 0.96698 * 113.99761 * 180.02562 * 18 17 16 30 30 H 1.07999 * 119.56729 * 180.28170 * 19 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2106 1.1232 0.0000 4 16 3.9318 0.7818 -0.0007 5 6 3.6359 -0.9537 -0.0002 6 6 4.5261 -2.0196 0.0000 7 6 4.0424 -3.3372 -0.0001 8 6 4.9417 -4.4230 -0.0004 9 1 4.6370 -5.3766 -0.4058 10 6 6.2288 -4.2654 0.5245 11 7 7.2033 -5.0345 0.1100 12 14 6.5565 -2.9571 1.8169 13 1 7.0855 -1.7346 1.1608 14 1 5.2916 -2.6317 2.5237 15 1 7.5528 -3.4652 2.7939 16 6 2.6488 -3.5687 -0.0065 17 6 2.1242 -4.9814 -0.0134 18 8 0.6954 -4.9589 -0.0185 19 6 1.7830 -2.5305 -0.0008 20 6 2.2525 -1.1902 -0.0001 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3633 0.8901 -0.5135 23 1 -0.3632 -0.8898 -0.5141 24 1 1.7824 2.1147 0.0006 25 1 5.5902 -1.8349 -0.0005 26 1 7.0154 -5.7777 -0.4843 27 1 2.4830 -5.4979 -0.9039 28 1 2.4759 -5.5040 0.8761 29 1 0.2882 -5.8360 -0.0227 30 1 0.7202 -2.7228 -0.0012 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396404825.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:30 Heat of formation + Delta-G solvation = -32.899645 kcal Electronic energy + Delta-G solvation = -15529.222546 eV Core-core repulsion = 12993.598494 eV Total energy + Delta-G solvation = -2535.624052 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.85290 -36.56959 -35.37522 -33.42572 -30.67018 -29.76046 -27.53145 -25.65323 -24.36941 -21.63273 -20.68190 -18.67359 -18.11143 -16.99736 -16.54445 -14.69439 -14.56825 -14.37263 -14.23576 -13.77566 -13.40158 -13.14198 -12.87968 -12.52070 -12.15200 -11.86219 -11.53689 -11.37348 -10.99073 -10.59524 -10.53070 -10.19932 -10.08587 -10.06427 -9.47413 -9.40798 -9.06359 -8.47383 -7.75281 -7.37069 -6.80063 -4.72603 1.77198 2.45563 2.55014 2.94628 3.02865 3.18603 3.35102 3.49227 3.87483 4.33516 4.77224 5.12098 5.55252 5.61581 5.84678 5.92491 5.98963 6.02303 6.14506 6.19595 6.25220 6.60077 6.66393 6.81940 6.92280 7.03939 7.23216 7.41264 7.52959 7.58001 7.67565 8.07251 8.12101 8.30197 8.46676 9.70862 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.018991 B = 0.010806 C = 0.007272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.022190 B = 2590.580478 C = 3849.531803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.040 4.040 3 C -0.269 4.269 4 S -0.001 6.001 5 C -0.047 4.047 6 C -0.241 4.241 7 C 0.121 3.879 8 C -0.493 4.493 9 H 0.085 0.915 10 C 0.048 3.952 11 N -0.790 5.790 12 Si 1.065 2.935 13 H -0.272 1.272 14 H -0.259 1.259 15 H -0.285 1.285 16 C -0.173 4.173 17 C 0.139 3.861 18 O -0.577 6.577 19 C -0.017 4.017 20 C -0.210 4.210 21 H 0.064 0.936 22 H 0.057 0.943 23 H 0.064 0.936 24 H 0.146 0.854 25 H 0.109 0.891 26 H 0.291 0.709 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.370 0.630 30 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.338 2.715 0.948 7.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.051 4.051 3 C -0.401 4.401 4 S 0.261 5.739 5 C -0.162 4.162 6 C -0.267 4.267 7 C 0.114 3.886 8 C -0.521 4.521 9 H 0.103 0.897 10 C -0.176 4.176 11 N -0.411 5.411 12 Si 0.890 3.110 13 H -0.199 1.199 14 H -0.183 1.183 15 H -0.213 1.213 16 C -0.174 4.174 17 C 0.063 3.937 18 O -0.381 6.381 19 C -0.037 4.037 20 C -0.216 4.216 21 H 0.083 0.917 22 H 0.076 0.924 23 H 0.083 0.917 24 H 0.164 0.836 25 H 0.126 0.874 26 H 0.103 0.897 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.216 0.784 30 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.737 4.957 1.769 7.081 hybrid contribution -2.298 -2.245 -1.102 3.397 sum -7.035 2.712 0.667 7.569 Atomic orbital electron populations 1.20519 0.91304 1.01884 1.01616 1.18564 0.95791 0.91782 0.98999 1.24292 0.95241 1.00721 1.19889 1.83662 1.06814 1.01206 1.82204 1.22223 0.96552 0.94858 1.02541 1.20132 0.96945 0.90519 1.19113 1.17264 0.90803 0.92011 0.88472 1.20667 0.98408 0.98656 1.34360 0.89741 1.27404 0.91163 1.01200 0.97785 1.70558 1.33755 1.12798 1.23957 0.83664 0.77678 0.74287 0.75392 1.19855 1.18269 1.21252 1.19124 0.93362 0.93055 1.11886 1.20649 0.78594 0.95210 0.99287 1.86437 1.20730 1.33115 1.97844 1.20124 0.98550 0.89799 0.95212 1.17635 0.91210 0.93241 1.19478 0.91750 0.92354 0.91711 0.83637 0.87352 0.89748 0.93705 0.93114 0.78422 0.86897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.45 9.92 36.01 0.36 -1.09 16 2 C -0.04 -0.78 5.82 -105.70 -0.62 -1.40 16 3 C -0.27 -5.04 10.81 28.82 0.31 -4.73 16 4 S 0.00 -0.02 23.29 -107.50 -2.50 -2.52 16 5 C -0.05 -1.11 6.46 -38.55 -0.25 -1.36 16 6 C -0.24 -6.00 7.45 -38.55 -0.29 -6.28 16 7 C 0.12 2.99 5.15 -106.91 -0.55 2.44 16 8 C -0.49 -12.28 8.80 -37.92 -0.33 -12.62 16 9 H 0.08 2.08 7.14 -52.48 -0.37 1.70 16 10 C 0.05 1.18 5.31 -17.34 -0.09 1.09 16 11 N -0.79 -19.84 13.66 55.54 0.76 -19.08 16 12 Si 1.07 23.81 25.06 -169.99 -4.26 19.55 16 13 H -0.27 -5.98 6.65 56.52 0.38 -5.61 16 14 H -0.26 -5.86 7.08 56.52 0.40 -5.46 16 15 H -0.29 -6.09 7.11 56.52 0.40 -5.68 16 16 C -0.17 -3.97 5.88 -104.55 -0.61 -4.58 16 17 C 0.14 2.67 6.22 36.01 0.22 2.90 16 18 O -0.58 -9.65 12.07 -35.23 -0.43 -10.07 16 19 C -0.02 -0.37 8.94 -39.22 -0.35 -0.72 16 20 C -0.21 -4.77 5.87 -106.83 -0.63 -5.40 16 21 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.06 0.77 8.11 -51.93 -0.42 0.35 16 23 H 0.06 0.98 7.30 -51.93 -0.38 0.61 16 24 H 0.15 2.28 8.06 -52.48 -0.42 1.86 16 25 H 0.11 2.70 4.71 -52.49 -0.25 2.45 16 26 H 0.29 6.99 8.73 -40.82 -0.36 6.63 16 27 H 0.04 0.84 7.78 -51.92 -0.40 0.43 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.37 4.09 9.12 45.56 0.42 4.51 16 30 H 0.11 2.33 6.20 -52.49 -0.33 2.01 16 LS Contribution 264.95 15.07 3.99 3.99 Total: -1.00 -27.63 264.95 -7.45 -35.07 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -2.18 Total: 4.81 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: -2.83 Total: -31.75 kcal Atomic # 7 Polarization: -19.84 SS G_CDS: 0.76 Total: -19.08 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -0.43 Total: -10.07 kcal Atomic # 14 Polarization: 23.81 SS G_CDS: -4.26 Total: 19.55 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.50 Total: -2.52 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -27.63 -7.45 -35.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396404825.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.174 kcal (2) G-P(sol) polarization free energy of solvation -27.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds