Wall clock time and date at job start Mon Mar 30 2020 05:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.32529 * 122.05915 * 2 1 4 4 S 1.75477 * 110.83937 * 180.02562 * 3 2 1 5 5 C 1.76047 * 91.54431 * 359.97438 * 4 3 2 6 6 C 1.38880 * 130.45795 * 180.02562 * 5 4 3 7 7 C 1.40357 * 119.97230 * 180.02562 * 6 5 4 8 8 C 1.40992 * 120.20588 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00601 * 205.67670 * 8 7 6 10 10 C 1.39885 * 120.00161 * 25.68052 * 8 7 6 11 11 N 1.30885 * 120.00391 * 205.38915 * 10 8 7 12 12 Si 1.86803 * 119.99614 * 25.38730 * 10 8 7 13 13 H 1.48493 * 109.47316 * 263.80782 * 12 10 8 14 14 H 1.48507 * 109.47051 * 23.80888 * 12 10 8 15 15 H 1.48498 * 109.46903 * 143.80385 * 12 10 8 16 16 C 1.41268 * 119.59076 * 0.27663 * 7 6 5 17 17 C 1.50707 * 119.80261 * 179.70567 * 16 7 6 18 18 O 1.42901 * 109.47042 * 179.97438 * 17 16 7 19 19 C 1.35187 * 120.39601 * 359.42911 * 16 7 6 20 20 C 1.40348 * 109.37912 * 0.02562 * 5 4 3 21 21 H 1.09000 * 109.46814 * 269.98016 * 1 2 3 22 22 H 1.08995 * 109.46861 * 29.98235 * 1 2 3 23 23 H 1.08999 * 109.46439 * 149.98089 * 1 2 3 24 24 H 1.08005 * 124.58464 * 0.03595 * 3 2 1 25 25 H 1.07997 * 120.01736 * 359.97438 * 6 5 4 26 26 H 0.97000 * 119.99867 * 353.07427 * 11 10 8 27 27 H 1.09007 * 109.46804 * 299.99745 * 17 16 7 28 28 H 1.08998 * 109.46968 * 59.99290 * 17 16 7 29 29 H 0.96698 * 113.99761 * 180.02562 * 18 17 16 30 30 H 1.07999 * 119.56729 * 180.28170 * 19 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2106 1.1232 0.0000 4 16 3.9318 0.7818 -0.0007 5 6 3.6359 -0.9537 -0.0002 6 6 4.5261 -2.0196 0.0000 7 6 4.0424 -3.3372 -0.0001 8 6 4.9417 -4.4230 -0.0004 9 1 4.6370 -5.3766 -0.4058 10 6 6.2288 -4.2654 0.5245 11 7 7.2033 -5.0345 0.1100 12 14 6.5565 -2.9571 1.8169 13 1 7.0855 -1.7346 1.1608 14 1 5.2916 -2.6317 2.5237 15 1 7.5528 -3.4652 2.7939 16 6 2.6488 -3.5687 -0.0065 17 6 2.1242 -4.9814 -0.0134 18 8 0.6954 -4.9589 -0.0185 19 6 1.7830 -2.5305 -0.0008 20 6 2.2525 -1.1902 -0.0001 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3633 0.8901 -0.5135 23 1 -0.3632 -0.8898 -0.5141 24 1 1.7824 2.1147 0.0006 25 1 5.5902 -1.8349 -0.0005 26 1 7.0154 -5.7777 -0.4843 27 1 2.4830 -5.4979 -0.9039 28 1 2.4759 -5.5040 0.8761 29 1 0.2882 -5.8360 -0.0227 30 1 0.7202 -2.7228 -0.0012 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396404825.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:29 Heat of formation + Delta-G solvation = -50.279798 kcal Electronic energy + Delta-G solvation = -15529.976206 eV Core-core repulsion = 12993.598494 eV Total energy + Delta-G solvation = -2536.377712 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.55212 -38.04174 -36.98091 -35.18411 -32.32092 -31.49668 -28.91034 -27.32608 -26.02948 -23.40742 -22.34922 -20.44134 -19.76522 -18.56986 -18.05315 -16.41878 -16.20016 -16.05174 -15.80851 -15.41736 -14.86239 -14.80538 -14.57518 -13.93785 -13.75245 -13.37838 -13.24546 -12.83789 -12.66769 -12.24817 -12.17177 -11.82698 -11.76711 -11.69906 -11.18046 -11.03657 -10.82040 -10.17565 -9.59893 -9.16418 -8.45846 -6.60413 0.09013 0.65208 0.87465 1.25589 1.34254 1.37937 1.62474 1.71398 2.07955 2.52487 3.29564 3.43527 4.00886 4.15935 4.31630 4.45187 4.56447 4.66468 4.70968 4.81919 4.86854 4.92319 5.03721 5.20057 5.23758 5.32293 5.42405 5.66681 5.80333 5.91194 5.93409 6.24180 6.48677 6.62977 6.97097 7.83773 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.018991 B = 0.010806 C = 0.007272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.022190 B = 2590.580478 C = 3849.531803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.061 4.061 3 C -0.247 4.247 4 S 0.010 5.990 5 C -0.084 4.084 6 C -0.260 4.260 7 C 0.103 3.897 8 C -0.518 4.518 9 H 0.076 0.924 10 C 0.026 3.974 11 N -0.814 5.814 12 Si 1.090 2.910 13 H -0.271 1.271 14 H -0.268 1.268 15 H -0.269 1.269 16 C -0.186 4.186 17 C 0.149 3.851 18 O -0.581 6.581 19 C -0.024 4.024 20 C -0.210 4.210 21 H 0.078 0.922 22 H 0.086 0.914 23 H 0.063 0.937 24 H 0.186 0.814 25 H 0.099 0.901 26 H 0.288 0.712 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.397 0.603 30 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.635 4.537 1.221 10.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.072 4.072 3 C -0.379 4.379 4 S 0.272 5.728 5 C -0.199 4.199 6 C -0.286 4.286 7 C 0.097 3.903 8 C -0.546 4.546 9 H 0.094 0.906 10 C -0.193 4.193 11 N -0.436 5.436 12 Si 0.912 3.088 13 H -0.198 1.198 14 H -0.193 1.193 15 H -0.195 1.195 16 C -0.188 4.188 17 C 0.072 3.928 18 O -0.389 6.389 19 C -0.044 4.044 20 C -0.216 4.216 21 H 0.097 0.903 22 H 0.104 0.896 23 H 0.082 0.918 24 H 0.203 0.797 25 H 0.116 0.884 26 H 0.100 0.900 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.247 0.753 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.035 6.750 2.039 9.960 hybrid contribution -1.807 -2.599 -1.225 3.395 sum -8.843 4.150 0.813 9.802 Atomic orbital electron populations 1.20575 0.87982 1.03306 1.02962 1.18936 0.98224 0.90580 0.99458 1.24844 0.93804 1.02387 1.16878 1.83626 1.08792 0.98749 1.81633 1.22576 0.97264 0.96576 1.03500 1.20187 0.96832 0.91324 1.20212 1.17469 0.91907 0.91994 0.88913 1.20616 0.99016 0.98663 1.36296 0.90554 1.27991 0.91223 1.01853 0.98263 1.70588 1.33895 1.13762 1.25367 0.83330 0.77426 0.73389 0.74659 1.19767 1.19289 1.19534 1.19560 0.92901 0.95351 1.10947 1.20407 0.79941 0.92991 0.99452 1.86353 1.19110 1.35683 1.97776 1.20367 0.99359 0.89655 0.95037 1.18190 0.91291 0.94678 1.17422 0.90318 0.89556 0.91767 0.79681 0.88368 0.90007 0.93512 0.92906 0.75342 0.85097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.34 9.92 71.24 0.71 -1.63 16 2 C -0.06 -2.17 5.82 -20.47 -0.12 -2.29 16 3 C -0.25 -8.23 10.81 66.68 0.72 -7.51 16 4 S 0.01 0.39 23.29 -56.49 -1.32 -0.93 16 5 C -0.08 -3.95 6.46 22.94 0.15 -3.80 16 6 C -0.26 -13.15 7.45 22.94 0.17 -12.98 16 7 C 0.10 5.21 5.15 -21.34 -0.11 5.10 16 8 C -0.52 -26.70 8.80 23.34 0.21 -26.50 16 9 H 0.08 3.93 7.14 -2.91 -0.02 3.90 16 10 C 0.03 1.33 5.31 85.23 0.45 1.78 16 11 N -0.81 -42.18 13.66 21.82 0.30 -41.88 16 12 Si 1.09 49.20 25.06 68.60 1.72 50.92 16 13 H -0.27 -12.05 6.65 99.48 0.66 -11.39 16 14 H -0.27 -12.35 7.08 99.48 0.70 -11.65 16 15 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 16 C -0.19 -8.50 5.88 -19.82 -0.12 -8.62 16 17 C 0.15 5.63 6.22 71.24 0.44 6.07 16 18 O -0.58 -18.16 12.07 -148.98 -1.80 -19.95 16 19 C -0.02 -1.05 8.94 22.50 0.20 -0.85 16 20 C -0.21 -9.14 5.87 -21.29 -0.12 -9.27 16 21 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 22 H 0.09 1.79 8.11 -2.39 -0.02 1.77 16 23 H 0.06 1.70 7.30 -2.39 -0.02 1.68 16 24 H 0.19 4.70 8.06 -2.91 -0.02 4.67 16 25 H 0.10 5.04 4.71 -2.91 -0.01 5.02 16 26 H 0.29 14.46 8.73 -92.71 -0.81 13.65 16 27 H 0.05 1.74 7.78 -2.38 -0.02 1.72 16 28 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.40 7.70 9.12 -74.06 -0.68 7.03 16 30 H 0.13 5.10 6.20 -2.91 -0.02 5.08 16 Total: -1.00 -59.54 264.95 1.90 -57.64 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.42 Total: 14.71 kcal Atomic # 6 Polarization: -63.08 SS G_CDS: 2.58 Total: -60.50 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 0.30 Total: -41.88 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -1.80 Total: -19.95 kcal Atomic # 14 Polarization: 49.20 SS G_CDS: 1.72 Total: 50.92 kcal Atomic # 16 Polarization: 0.39 SS G_CDS: -1.32 Total: -0.93 kcal Total: -59.54 1.90 -57.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396404825.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.361 kcal (2) G-P(sol) polarization free energy of solvation -59.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds