Wall clock time and date at job start Mon Mar 30 2020 05:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.31704 * 122.55334 * 2 1 4 4 S 1.75264 * 111.51514 * 180.02562 * 3 2 1 5 5 C 1.76003 * 92.25363 * 359.97438 * 4 3 2 6 6 C 1.40463 * 130.26392 * 179.97438 * 5 4 3 7 7 C 1.35675 * 120.82776 * 179.73509 * 6 5 4 8 8 C 1.50703 * 119.94953 * 180.25998 * 7 6 5 9 9 O 1.42893 * 109.47174 * 0.26545 * 8 7 6 10 10 C 1.41160 * 120.10025 * 0.52763 * 7 6 5 11 11 C 1.41271 * 120.05928 * 179.75822 * 10 7 6 12 12 H 1.08003 * 119.99935 * 28.92860 * 11 10 7 13 13 C 1.39858 * 120.00080 * 208.93429 * 11 10 7 14 14 N 1.30900 * 119.99937 * 197.52033 * 13 11 10 15 15 Si 1.86799 * 119.99984 * 17.52468 * 13 11 10 16 16 H 1.48497 * 109.46882 * 270.00016 * 15 13 11 17 17 H 1.48499 * 109.47032 * 30.00065 * 15 13 11 18 18 H 1.48501 * 109.47142 * 150.00095 * 15 13 11 19 19 C 1.39903 * 119.88277 * 359.47933 * 10 7 6 20 20 C 1.40144 * 109.56280 * 0.02562 * 5 4 3 21 21 H 1.08998 * 109.46959 * 269.97686 * 1 2 3 22 22 H 1.09001 * 109.46984 * 29.97919 * 1 2 3 23 23 H 1.08998 * 109.46637 * 149.97501 * 1 2 3 24 24 H 1.08003 * 124.24171 * 0.04305 * 3 2 1 25 25 H 1.08001 * 119.58819 * 359.97438 * 6 5 4 26 26 H 1.08997 * 109.46757 * 120.26853 * 8 7 6 27 27 H 1.09007 * 109.46694 * 240.26451 * 8 7 6 28 28 H 0.96695 * 114.00321 * 180.02562 * 9 8 7 29 29 H 0.97002 * 120.00335 * 355.44838 * 14 13 11 30 30 H 1.08004 * 120.00910 * 180.23817 * 19 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.1101 0.0000 4 16 3.9359 0.7746 -0.0007 5 6 3.6671 -0.9648 -0.0003 6 6 4.5878 -2.0257 -0.0010 7 6 4.1635 -3.3144 0.0050 8 6 5.1686 -4.4373 0.0100 9 8 6.4901 -3.8937 0.0137 10 6 2.7822 -3.6050 0.0007 11 6 2.3415 -4.9472 0.0018 12 1 2.9492 -5.7148 0.4578 13 6 1.1182 -5.2821 -0.5879 14 7 0.5444 -6.4232 -0.3017 15 14 0.3035 -4.1008 -1.7838 16 1 -0.5912 -3.1799 -1.0377 17 1 1.3462 -3.3140 -2.4901 18 1 -0.4923 -4.8697 -2.7742 19 6 1.8504 -2.5615 0.0014 20 6 2.2904 -1.2269 -0.0002 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3632 -0.8898 -0.5142 24 1 1.7902 2.1028 0.0007 25 1 5.6466 -1.8129 -0.0024 26 1 5.0250 -5.0494 0.9004 27 1 5.0310 -5.0521 -0.8796 28 1 7.1899 -4.5610 0.0166 29 1 0.9978 -7.0650 0.2670 30 1 0.7930 -2.7815 0.0020 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396405308.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:55 Heat of formation + Delta-G solvation = -48.730580 kcal Electronic energy + Delta-G solvation = -15568.200606 eV Core-core repulsion = 13031.890074 eV Total energy + Delta-G solvation = -2536.310533 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.45033 -38.07853 -36.76477 -35.28732 -32.27031 -31.47178 -28.99585 -27.32185 -26.03820 -23.26668 -22.49037 -20.43775 -19.55493 -18.80823 -18.06470 -16.35588 -16.23980 -16.06309 -15.84926 -15.40351 -14.89431 -14.79768 -14.56244 -14.06120 -13.60542 -13.45048 -13.39853 -12.73504 -12.60123 -12.29065 -12.19960 -11.91636 -11.77014 -11.42328 -11.29500 -11.03064 -10.81759 -10.14046 -9.45315 -9.14202 -8.46734 -6.57028 0.03075 0.61479 0.91888 1.30204 1.32294 1.39573 1.60314 1.73160 2.13158 2.52586 3.30965 3.39338 3.85271 4.05921 4.22557 4.39034 4.53335 4.58738 4.62495 4.77405 4.79544 4.85852 4.98877 5.16175 5.30270 5.33496 5.44719 5.53379 5.65030 5.85382 5.95337 6.31604 6.49114 6.71711 6.92530 7.97566 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.017730 B = 0.011572 C = 0.007365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.839586 B = 2419.133985 C = 3800.712660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.115 4.115 3 C -0.184 4.184 4 S 0.044 5.956 5 C -0.250 4.250 6 C -0.039 4.039 7 C -0.167 4.167 8 C 0.149 3.851 9 O -0.582 6.582 10 C 0.085 3.915 11 C -0.532 4.532 12 H 0.065 0.935 13 C 0.018 3.982 14 N -0.838 5.838 15 Si 1.095 2.905 16 H -0.255 1.255 17 H -0.272 1.272 18 H -0.280 1.280 19 C -0.241 4.241 20 C -0.042 4.042 21 H 0.078 0.922 22 H 0.096 0.904 23 H 0.052 0.948 24 H 0.196 0.804 25 H 0.122 0.878 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.397 0.603 29 H 0.282 0.718 30 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.800 9.387 -0.749 9.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.317 4.317 4 S 0.306 5.694 5 C -0.364 4.364 6 C -0.061 4.061 7 C -0.170 4.170 8 C 0.072 3.928 9 O -0.391 6.391 10 C 0.081 3.919 11 C -0.562 4.562 12 H 0.084 0.916 13 C -0.197 4.197 14 N -0.461 5.461 15 Si 0.917 3.083 16 H -0.181 1.181 17 H -0.197 1.197 18 H -0.207 1.207 19 C -0.263 4.263 20 C -0.049 4.049 21 H 0.097 0.903 22 H 0.115 0.885 23 H 0.071 0.929 24 H 0.213 0.787 25 H 0.140 0.860 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.247 0.753 29 H 0.093 0.907 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.393 11.003 -1.616 11.376 hybrid contribution 0.615 -2.433 1.245 2.802 sum 3.007 8.570 -0.370 9.090 Atomic orbital electron populations 1.20596 0.88324 1.03317 1.03084 1.20045 0.98064 0.90669 1.04002 1.25002 0.95562 1.02552 1.08597 1.83253 1.06238 0.97808 1.82087 1.22455 0.96408 0.97428 1.20061 1.19772 0.97865 0.90612 0.97854 1.19663 0.93704 0.94189 1.09452 1.20419 0.80482 0.92423 0.99516 1.86363 1.15807 1.39125 1.97782 1.17489 0.91001 0.93512 0.89912 1.20530 1.06289 0.93892 1.35472 0.91650 1.28026 0.94140 0.99862 0.97712 1.70623 1.36667 1.08654 1.30177 0.83305 0.76657 0.73389 0.74906 1.18056 1.19696 1.20678 1.20903 0.98302 0.90610 1.16498 1.19321 0.91980 0.93792 0.99762 0.90324 0.88545 0.92891 0.78656 0.85998 0.93410 0.92872 0.75325 0.90749 0.87188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.73 10.03 71.24 0.71 -2.01 16 2 C -0.11 -4.13 5.97 -18.66 -0.11 -4.24 16 3 C -0.18 -5.66 10.74 67.13 0.72 -4.94 16 4 S 0.04 1.53 23.23 -56.49 -1.31 0.21 16 5 C -0.25 -10.91 6.51 23.28 0.15 -10.76 16 6 C -0.04 -1.76 9.34 22.22 0.21 -1.56 16 7 C -0.17 -7.85 5.89 -19.74 -0.12 -7.97 16 8 C 0.15 5.88 6.26 71.24 0.45 6.33 16 9 O -0.58 -19.42 12.09 -148.98 -1.80 -21.22 16 10 C 0.08 4.32 5.12 -21.41 -0.11 4.21 16 11 C -0.53 -28.16 8.80 23.41 0.21 -27.95 16 12 H 0.07 3.53 7.23 -2.91 -0.02 3.51 16 13 C 0.02 0.93 5.41 85.22 0.46 1.39 16 14 N -0.84 -44.73 13.66 21.81 0.30 -44.43 16 15 Si 1.09 48.92 24.90 68.60 1.71 50.63 16 16 H -0.25 -10.49 6.30 99.48 0.63 -9.86 16 17 H -0.27 -12.45 7.03 99.48 0.70 -11.76 16 18 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 19 C -0.24 -11.80 7.00 23.23 0.16 -11.63 16 20 C -0.04 -1.87 6.01 -20.37 -0.12 -1.99 16 21 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 22 H 0.10 2.09 8.12 -2.39 -0.02 2.07 16 23 H 0.05 1.69 7.43 -2.39 -0.02 1.67 16 24 H 0.20 4.25 8.06 -2.91 -0.02 4.23 16 25 H 0.12 5.13 6.91 -2.91 -0.02 5.11 16 26 H 0.05 1.86 7.78 -2.39 -0.02 1.84 16 27 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 28 H 0.40 8.44 9.12 -74.06 -0.68 7.77 16 29 H 0.28 14.73 8.73 -92.71 -0.81 13.92 16 30 H 0.11 5.30 3.98 -2.91 -0.01 5.28 16 Total: -1.00 -61.13 265.04 1.88 -59.24 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.38 Total: 16.70 kcal Atomic # 6 Polarization: -63.75 SS G_CDS: 2.61 Total: -61.14 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 0.30 Total: -44.43 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -1.80 Total: -21.22 kcal Atomic # 14 Polarization: 48.92 SS G_CDS: 1.71 Total: 50.63 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -1.31 Total: 0.21 kcal Total: -61.13 1.88 -59.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396405308.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.514 kcal (2) G-P(sol) polarization free energy of solvation -61.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds