Wall clock time and date at job start Mon Mar 30 2020 05:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.31868 * 122.55367 * 2 1 4 4 S 1.75302 * 111.33522 * 180.27004 * 3 2 1 5 5 C 1.75891 * 92.17717 * 359.97438 * 4 3 2 6 6 C 1.39423 * 109.76577 * 359.97438 * 5 4 3 7 7 C 1.41353 * 118.99073 * 179.97438 * 6 5 4 8 8 C 1.37785 * 120.90102 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.61680 * 180.02562 * 8 7 6 10 10 O 1.42899 * 109.46881 * 269.97978 * 9 8 7 11 11 C 1.37882 * 120.77015 * 0.02562 * 8 7 6 12 12 C 1.40414 * 119.87807 * 359.97438 * 11 8 7 13 13 C 1.40926 * 120.11497 * 180.02562 * 12 11 8 14 14 H 1.08000 * 120.00632 * 154.43702 * 13 12 11 15 15 C 1.39932 * 120.00133 * 334.43395 * 13 12 11 16 16 N 1.30871 * 119.99751 * 342.61182 * 15 13 12 17 17 Si 1.86798 * 120.00465 * 162.60800 * 15 13 12 18 18 H 1.48504 * 109.46876 * 59.99886 * 17 15 13 19 19 H 1.48495 * 109.47650 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47225 * 300.00471 * 17 15 13 21 21 H 1.09001 * 109.46835 * 269.71521 * 1 2 3 22 22 H 1.09003 * 109.47236 * 29.70751 * 1 2 3 23 23 H 1.09001 * 109.47105 * 149.71229 * 1 2 3 24 24 H 1.07997 * 124.33010 * 0.24270 * 3 2 1 25 25 H 1.08001 * 119.54969 * 180.02562 * 7 6 5 26 26 H 1.09000 * 109.46818 * 29.97631 * 9 8 7 27 27 H 1.08994 * 109.47135 * 149.98249 * 9 8 7 28 28 H 0.96702 * 114.00354 * 179.97438 * 10 9 8 29 29 H 1.07994 * 120.06282 * 179.97438 * 11 8 7 30 30 H 0.97003 * 119.99674 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2166 1.1115 0.0000 4 16 3.9361 0.7705 -0.0077 5 6 3.6597 -0.9666 -0.0102 6 6 2.2898 -1.2261 -0.0046 7 6 1.8468 -2.5684 -0.0061 8 6 2.7477 -3.6109 -0.0124 9 6 2.2433 -5.0310 -0.0144 10 8 2.0896 -5.4837 1.3322 11 6 4.1053 -3.3699 -0.0169 12 6 4.5813 -2.0489 -0.0156 13 6 5.9678 -1.7970 -0.0208 14 1 6.3467 -0.8693 -0.4236 15 6 6.8538 -2.7487 0.4961 16 7 6.4099 -3.6987 1.2791 17 14 8.6702 -2.6634 0.0686 18 1 9.2271 -1.3665 0.5307 19 1 9.3891 -3.7776 0.7370 20 1 8.8385 -2.7782 -1.4023 21 1 -0.3633 -0.0051 1.0277 22 1 -0.3634 0.8926 -0.5093 23 1 -0.3633 -0.8874 -0.5183 24 1 1.7926 2.1047 0.0038 25 1 0.7876 -2.7797 -0.0022 26 1 1.2809 -5.0740 -0.5243 27 1 2.9583 -5.6697 -0.5330 28 1 1.7669 -6.3922 1.4074 29 1 4.8012 -4.1957 -0.0214 30 1 7.0242 -4.3583 1.6378 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396409717.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:32 Heat of formation + Delta-G solvation = -27.384010 kcal Electronic energy + Delta-G solvation = -15376.112053 eV Core-core repulsion = 12840.727177 eV Total energy + Delta-G solvation = -2535.384876 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.36179 -36.32427 -35.13188 -33.30333 -30.61453 -28.91557 -27.44469 -25.44933 -24.66115 -21.77922 -20.29176 -18.47328 -17.22811 -16.84255 -16.27678 -15.12281 -14.65628 -14.31234 -13.81126 -13.44941 -13.32641 -12.89270 -12.51810 -12.36341 -11.91404 -11.69361 -11.34086 -11.24752 -10.94800 -10.83824 -10.59287 -10.18060 -9.96330 -9.79264 -9.48366 -9.31091 -9.24296 -8.14137 -7.26126 -6.88989 -6.63969 -4.41980 1.96303 2.56228 2.73105 2.99749 3.02335 3.06098 3.26812 3.47192 3.86255 4.44183 5.08096 5.43892 5.54798 5.68941 5.79609 5.85432 5.91719 6.02862 6.10575 6.25011 6.43063 6.65614 6.79609 6.93665 7.08788 7.22984 7.38044 7.57615 7.76072 7.94449 8.08930 8.17403 8.44436 8.69681 8.76169 10.07016 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.017649 B = 0.010136 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.138267 B = 2761.671061 C = 4212.653524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.092 4.092 3 C -0.221 4.221 4 S 0.037 5.963 5 C -0.200 4.200 6 C -0.049 4.049 7 C -0.191 4.191 8 C -0.066 4.066 9 C 0.127 3.873 10 O -0.562 6.562 11 C -0.147 4.147 12 C 0.143 3.857 13 C -0.455 4.455 14 H 0.081 0.919 15 C 0.077 3.923 16 N -0.779 5.779 17 Si 0.910 3.090 18 H -0.263 1.263 19 H -0.276 1.276 20 H -0.262 1.262 21 H 0.062 0.938 22 H 0.057 0.943 23 H 0.063 0.937 24 H 0.148 0.852 25 H 0.093 0.907 26 H 0.039 0.961 27 H 0.044 0.956 28 H 0.364 0.636 29 H 0.125 0.875 30 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.246 0.323 -2.493 5.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.106 4.106 3 C -0.354 4.354 4 S 0.301 5.699 5 C -0.315 4.315 6 C -0.056 4.056 7 C -0.213 4.213 8 C -0.068 4.068 9 C 0.050 3.950 10 O -0.366 6.366 11 C -0.170 4.170 12 C 0.137 3.863 13 C -0.484 4.484 14 H 0.099 0.901 15 C -0.143 4.143 16 N -0.403 5.403 17 Si 0.734 3.266 18 H -0.188 1.188 19 H -0.201 1.201 20 H -0.186 1.186 21 H 0.081 0.919 22 H 0.076 0.924 23 H 0.082 0.918 24 H 0.165 0.835 25 H 0.111 0.889 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.209 0.791 29 H 0.143 0.857 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.649 1.725 -2.219 4.606 hybrid contribution -0.605 -1.398 -0.167 1.533 sum -4.254 0.327 -2.386 4.888 Atomic orbital electron populations 1.20430 0.91085 1.01733 1.01515 1.19720 0.95829 0.91880 1.03176 1.24647 0.97827 1.00862 1.12107 1.83490 1.03447 1.02105 1.80898 1.22594 0.95913 0.94978 1.18004 1.18724 0.91206 0.92624 1.03018 1.19914 0.96830 0.89873 1.14704 1.18989 0.94164 0.92001 1.01622 1.20952 0.97692 0.93489 0.82881 1.86701 1.89562 1.33044 1.27320 1.20995 0.92756 0.96559 1.06727 1.16930 0.91809 0.89120 0.88418 1.19451 0.90770 1.03215 1.34941 0.90134 1.25932 1.01804 0.94056 0.92528 1.69855 1.38009 1.11776 1.20642 0.86323 0.81198 0.79030 0.80061 1.18777 1.20123 1.18615 0.91894 0.92412 0.91817 0.83480 0.88907 0.94329 0.93799 0.79079 0.85726 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.38 10.03 36.01 0.36 -1.02 16 2 C -0.09 -1.85 5.97 -103.65 -0.62 -2.47 16 3 C -0.22 -4.25 10.76 28.83 0.31 -3.94 16 4 S 0.04 0.80 22.84 -107.50 -2.45 -1.66 16 5 C -0.20 -5.10 6.36 -37.64 -0.24 -5.34 16 6 C -0.05 -1.17 6.01 -105.39 -0.63 -1.80 16 7 C -0.19 -4.42 9.41 -38.56 -0.36 -4.79 16 8 C -0.07 -1.57 5.48 -104.92 -0.58 -2.14 16 9 C 0.13 2.42 7.15 36.01 0.26 2.68 16 10 O -0.56 -10.70 13.64 -35.23 -0.48 -11.18 16 11 C -0.15 -3.84 8.30 -38.89 -0.32 -4.16 16 12 C 0.14 3.86 5.59 -106.56 -0.60 3.27 16 13 C -0.45 -12.06 8.82 -37.93 -0.33 -12.40 16 14 H 0.08 2.08 7.76 -52.49 -0.41 1.67 16 15 C 0.08 1.91 5.13 -17.33 -0.09 1.82 16 16 N -0.78 -20.04 10.99 55.55 0.61 -19.43 16 17 Si 0.91 18.52 29.59 -169.99 -5.03 13.49 16 18 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 19 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 21 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 22 H 0.06 0.76 8.11 -51.93 -0.42 0.34 16 23 H 0.06 0.96 7.58 -51.93 -0.39 0.57 16 24 H 0.15 2.31 8.06 -52.49 -0.42 1.88 16 25 H 0.09 1.92 7.62 -52.49 -0.40 1.52 16 26 H 0.04 0.63 8.08 -51.93 -0.42 0.21 16 27 H 0.04 0.78 8.08 -51.93 -0.42 0.36 16 28 H 0.36 4.60 9.12 45.56 0.42 5.01 16 29 H 0.13 3.31 6.19 -52.49 -0.32 2.99 16 30 H 0.28 6.64 8.30 -40.82 -0.34 6.31 16 LS Contribution 274.41 15.07 4.14 4.14 Total: -1.00 -29.99 274.41 -8.41 -38.40 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -2.35 Total: 6.54 kcal Atomic # 6 Polarization: -27.45 SS G_CDS: -2.84 Total: -30.30 kcal Atomic # 7 Polarization: -20.04 SS G_CDS: 0.61 Total: -19.43 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: -0.48 Total: -11.18 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.45 Total: -1.66 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.99 -8.41 -38.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396409717.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.018 kcal (2) G-P(sol) polarization free energy of solvation -29.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds