Wall clock time and date at job start Mon Mar 30 2020 05:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.31868 * 122.55367 * 2 1 4 4 S 1.75302 * 111.33522 * 180.27004 * 3 2 1 5 5 C 1.75891 * 92.17717 * 359.97438 * 4 3 2 6 6 C 1.39423 * 109.76577 * 359.97438 * 5 4 3 7 7 C 1.41353 * 118.99073 * 179.97438 * 6 5 4 8 8 C 1.37785 * 120.90102 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.61680 * 180.02562 * 8 7 6 10 10 O 1.42899 * 109.46881 * 269.97978 * 9 8 7 11 11 C 1.37882 * 120.77015 * 0.02562 * 8 7 6 12 12 C 1.40414 * 119.87807 * 359.97438 * 11 8 7 13 13 C 1.40926 * 120.11497 * 180.02562 * 12 11 8 14 14 H 1.08000 * 120.00632 * 154.43702 * 13 12 11 15 15 C 1.39932 * 120.00133 * 334.43395 * 13 12 11 16 16 N 1.30871 * 119.99751 * 342.61182 * 15 13 12 17 17 Si 1.86798 * 120.00465 * 162.60800 * 15 13 12 18 18 H 1.48504 * 109.46876 * 59.99886 * 17 15 13 19 19 H 1.48495 * 109.47650 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47225 * 300.00471 * 17 15 13 21 21 H 1.09001 * 109.46835 * 269.71521 * 1 2 3 22 22 H 1.09003 * 109.47236 * 29.70751 * 1 2 3 23 23 H 1.09001 * 109.47105 * 149.71229 * 1 2 3 24 24 H 1.07997 * 124.33010 * 0.24270 * 3 2 1 25 25 H 1.08001 * 119.54969 * 180.02562 * 7 6 5 26 26 H 1.09000 * 109.46818 * 29.97631 * 9 8 7 27 27 H 1.08994 * 109.47135 * 149.98249 * 9 8 7 28 28 H 0.96702 * 114.00354 * 179.97438 * 10 9 8 29 29 H 1.07994 * 120.06282 * 179.97438 * 11 8 7 30 30 H 0.97003 * 119.99674 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2166 1.1115 0.0000 4 16 3.9361 0.7705 -0.0077 5 6 3.6597 -0.9666 -0.0102 6 6 2.2898 -1.2261 -0.0046 7 6 1.8468 -2.5684 -0.0061 8 6 2.7477 -3.6109 -0.0124 9 6 2.2433 -5.0310 -0.0144 10 8 2.0896 -5.4837 1.3322 11 6 4.1053 -3.3699 -0.0169 12 6 4.5813 -2.0489 -0.0156 13 6 5.9678 -1.7970 -0.0208 14 1 6.3467 -0.8693 -0.4236 15 6 6.8538 -2.7487 0.4961 16 7 6.4099 -3.6987 1.2791 17 14 8.6702 -2.6634 0.0686 18 1 9.2271 -1.3665 0.5307 19 1 9.3891 -3.7776 0.7370 20 1 8.8385 -2.7782 -1.4023 21 1 -0.3633 -0.0051 1.0277 22 1 -0.3634 0.8926 -0.5093 23 1 -0.3633 -0.8874 -0.5183 24 1 1.7926 2.1047 0.0038 25 1 0.7876 -2.7797 -0.0022 26 1 1.2809 -5.0740 -0.5243 27 1 2.9583 -5.6697 -0.5330 28 1 1.7669 -6.3922 1.4074 29 1 4.8012 -4.1957 -0.0214 30 1 7.0242 -4.3583 1.6378 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396409717.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:31 Heat of formation + Delta-G solvation = -46.517393 kcal Electronic energy + Delta-G solvation = -15376.941738 eV Core-core repulsion = 12840.727177 eV Total energy + Delta-G solvation = -2536.214562 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.10554 -37.83256 -36.83801 -35.07163 -32.38717 -30.61453 -28.89848 -27.28558 -26.29342 -23.53300 -22.05973 -20.13825 -19.00352 -18.29015 -18.08350 -16.86384 -16.34266 -16.01130 -15.48609 -14.93006 -14.77383 -14.56493 -14.10669 -13.90013 -13.57072 -13.26450 -12.96206 -12.78898 -12.67039 -12.52586 -12.20787 -11.84531 -11.70173 -11.48642 -11.12094 -11.08017 -10.86890 -9.93796 -9.07103 -8.74226 -8.40831 -6.37501 0.26356 0.73627 1.07155 1.33023 1.37508 1.46440 1.54168 1.75557 2.15829 2.63365 3.41323 3.83975 3.99573 4.24470 4.35339 4.39155 4.61014 4.65387 4.67776 4.86739 4.90715 5.01078 5.12915 5.17360 5.35250 5.50257 5.56412 5.83216 5.86638 6.09967 6.22435 6.52894 6.77497 6.86161 7.03357 8.24179 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.017649 B = 0.010136 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.138267 B = 2761.671061 C = 4212.653524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.104 4.104 3 C -0.205 4.205 4 S 0.021 5.979 5 C -0.238 4.238 6 C -0.066 4.066 7 C -0.194 4.194 8 C -0.078 4.078 9 C 0.132 3.868 10 O -0.586 6.586 11 C -0.177 4.177 12 C 0.111 3.889 13 C -0.489 4.489 14 H 0.073 0.927 15 C 0.037 3.963 16 N -0.812 5.812 17 Si 0.982 3.018 18 H -0.261 1.261 19 H -0.262 1.262 20 H -0.258 1.258 21 H 0.075 0.925 22 H 0.088 0.912 23 H 0.067 0.933 24 H 0.191 0.809 25 H 0.121 0.879 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.393 0.607 29 H 0.108 0.892 30 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.779 0.857 -2.744 7.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C -0.338 4.338 4 S 0.285 5.715 5 C -0.353 4.353 6 C -0.073 4.073 7 C -0.216 4.216 8 C -0.080 4.080 9 C 0.055 3.945 10 O -0.395 6.395 11 C -0.200 4.200 12 C 0.106 3.894 13 C -0.518 4.518 14 H 0.091 0.909 15 C -0.179 4.179 16 N -0.437 5.437 17 Si 0.801 3.199 18 H -0.185 1.185 19 H -0.186 1.186 20 H -0.182 1.182 21 H 0.094 0.906 22 H 0.107 0.893 23 H 0.086 0.914 24 H 0.208 0.792 25 H 0.139 0.861 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.242 0.758 29 H 0.126 0.874 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.215 2.235 -2.467 6.187 hybrid contribution -0.277 -1.532 -0.067 1.558 sum -5.492 0.703 -2.534 6.089 Atomic orbital electron populations 1.20509 0.87399 1.03522 1.02824 1.20101 0.98299 0.90320 1.02975 1.25087 0.95562 1.02715 1.10450 1.83397 1.06654 1.00134 1.81337 1.22978 0.96900 0.96550 1.18902 1.19347 0.91292 0.94475 1.02154 1.20322 0.98139 0.89689 1.13437 1.19512 0.93410 0.94929 1.00123 1.20906 0.99394 0.90919 0.83321 1.86607 1.90005 1.35599 1.27243 1.20990 0.93926 0.95957 1.09107 1.17330 0.92672 0.90276 0.89126 1.19626 0.91512 1.03935 1.36736 0.90860 1.26777 1.06205 0.93220 0.91721 1.69911 1.39804 1.12571 1.21431 0.85260 0.75342 0.79362 0.79887 1.18485 1.18619 1.18179 0.90644 0.89344 0.91417 0.79181 0.86135 0.90949 0.93081 0.75814 0.87394 0.89776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.26 10.03 71.24 0.71 -1.55 16 2 C -0.10 -3.93 5.97 -18.82 -0.11 -4.04 16 3 C -0.21 -7.37 10.76 67.00 0.72 -6.65 16 4 S 0.02 0.94 22.84 -56.49 -1.29 -0.35 16 5 C -0.24 -12.47 6.36 23.53 0.15 -12.32 16 6 C -0.07 -3.09 6.01 -20.37 -0.12 -3.21 16 7 C -0.19 -8.83 9.41 22.93 0.22 -8.62 16 8 C -0.08 -3.72 5.48 -20.05 -0.11 -3.83 16 9 C 0.13 4.85 7.15 71.24 0.51 5.36 16 10 O -0.59 -21.52 13.64 -148.98 -2.03 -23.55 16 11 C -0.18 -9.61 8.30 22.72 0.19 -9.42 16 12 C 0.11 6.30 5.59 -21.12 -0.12 6.18 16 13 C -0.49 -27.25 8.82 23.34 0.21 -27.04 16 14 H 0.07 4.01 7.76 -2.91 -0.02 3.98 16 15 C 0.04 1.92 5.13 85.25 0.44 2.36 16 16 N -0.81 -43.41 10.99 21.83 0.24 -43.17 16 17 Si 0.98 38.86 29.59 68.60 2.03 40.89 16 18 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 19 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 20 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 21 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 22 H 0.09 1.87 8.11 -2.39 -0.02 1.85 16 23 H 0.07 1.78 7.58 -2.39 -0.02 1.77 16 24 H 0.19 5.10 8.06 -2.91 -0.02 5.07 16 25 H 0.12 4.68 7.62 -2.91 -0.02 4.66 16 26 H 0.07 2.16 8.08 -2.39 -0.02 2.14 16 27 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 28 H 0.39 9.09 9.12 -74.06 -0.68 8.42 16 29 H 0.11 6.07 6.19 -2.91 -0.02 6.06 16 30 H 0.29 14.03 8.30 -92.71 -0.77 13.26 16 Total: -1.00 -67.83 274.41 2.12 -65.70 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: 0.49 Total: 23.26 kcal Atomic # 6 Polarization: -65.46 SS G_CDS: 2.68 Total: -62.78 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 0.24 Total: -43.17 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -2.03 Total: -23.55 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.89 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -1.29 Total: -0.35 kcal Total: -67.83 2.12 -65.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396409717.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.187 kcal (2) G-P(sol) polarization free energy of solvation -67.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds