Wall clock time and date at job start Mon Mar 30 2020 06:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47062 * 2 1 4 4 C 1.34255 * 125.06525 * 125.00076 * 3 2 1 5 5 C 1.39262 * 107.67774 * 180.02562 * 4 3 2 6 6 C 1.41272 * 126.94707 * 180.02562 * 5 4 3 7 7 H 1.07999 * 119.99751 * 180.02562 * 6 5 4 8 8 C 1.39752 * 120.00085 * 0.02562 * 6 5 4 9 9 N 1.31012 * 119.99867 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99945 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47441 * 89.99733 * 10 8 6 12 12 H 1.48502 * 109.47080 * 209.99927 * 10 8 6 13 13 H 1.48498 * 109.47222 * 329.99832 * 10 8 6 14 14 C 1.47164 * 106.10539 * 359.97438 * 5 4 3 15 15 C 1.48099 * 126.51877 * 179.97438 * 14 5 4 16 16 C 1.39465 * 122.80109 * 145.00480 * 15 14 5 17 17 C 1.32998 * 114.92846 * 179.73297 * 16 15 14 18 18 S 1.75808 * 109.98387 * 359.97438 * 17 16 15 19 19 C 1.34802 * 122.80829 * 324.71223 * 15 14 5 20 20 N 1.31343 * 106.95808 * 0.22689 * 14 5 4 21 21 H 1.08998 * 109.46995 * 299.99281 * 1 2 3 22 22 H 1.08997 * 109.47195 * 59.99585 * 1 2 3 23 23 H 1.09005 * 109.46617 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46995 * 240.00718 * 2 1 3 25 25 H 1.08999 * 109.47703 * 120.00433 * 2 1 3 26 26 H 1.07996 * 126.16194 * 0.02654 * 4 3 2 27 27 H 0.97002 * 120.00245 * 179.97438 * 9 8 6 28 28 H 1.07995 * 122.53266 * 359.75207 * 16 15 14 29 29 H 1.07995 * 125.00827 * 179.97438 * 17 16 15 30 30 H 1.07996 * 125.24056 * 0.28801 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8696 1.8983 0.9001 5 6 3.0871 3.2310 0.5596 6 6 3.9153 4.1555 1.2341 7 1 4.0019 5.1686 0.8701 8 6 4.6226 3.7592 2.3724 9 7 4.5172 2.5303 2.8143 10 14 5.7172 4.9819 3.2647 11 1 4.9263 5.6868 4.3054 12 1 6.8461 4.2602 3.9051 13 1 6.2494 5.9708 2.2931 14 6 2.2807 3.4812 -0.6458 15 6 2.1791 4.7583 -1.3888 16 6 2.0408 4.8167 -2.7753 17 6 1.9583 6.0448 -3.2791 18 16 2.0534 7.2323 -1.9862 19 6 2.2069 5.9611 -0.7809 20 7 1.6640 2.3579 -0.9340 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 3.3071 1.3750 1.7375 27 1 5.0083 2.2551 3.6042 28 1 2.0032 3.9317 -3.3930 29 1 1.8490 6.2781 -4.3279 30 1 2.3078 6.1197 0.2826 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409438470.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:17 Heat of formation + Delta-G solvation = 79.862020 kcal Electronic energy + Delta-G solvation = -15316.335286 eV Core-core repulsion = 12817.893698 eV Total energy + Delta-G solvation = -2498.441588 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.01643 -38.47382 -35.62568 -34.49522 -31.23261 -30.66939 -29.46697 -26.70997 -25.39408 -23.58046 -21.45817 -21.26360 -19.36495 -18.80476 -17.93909 -17.26667 -16.22231 -16.14575 -15.54716 -14.88559 -14.37673 -14.29699 -13.82589 -13.74648 -13.46525 -13.20096 -13.08416 -12.97098 -12.83202 -12.72801 -12.23181 -12.12394 -11.79429 -11.52562 -11.15784 -10.84758 -10.10243 -9.51220 -9.13038 -8.78519 -8.37402 -5.97464 0.10989 0.84739 1.09285 1.30561 1.37980 1.43128 1.55261 2.00322 2.20798 2.37057 2.49992 3.55494 3.91568 4.11672 4.21413 4.30948 4.42458 4.61128 4.69672 4.77494 4.83092 4.98189 5.07968 5.21548 5.31490 5.47918 5.50582 5.76444 5.90090 5.97712 6.48636 6.91353 7.10044 7.18411 7.48834 8.64414 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.013199 B = 0.010837 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.885560 B = 2583.062605 C = 4543.842425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.129 3.871 3 N -0.382 5.382 4 C -0.077 4.077 5 C -0.060 4.060 6 C -0.447 4.447 7 H 0.073 0.927 8 C 0.013 3.987 9 N -0.865 5.865 10 Si 0.981 3.019 11 H -0.268 1.268 12 H -0.274 1.274 13 H -0.264 1.264 14 C 0.029 3.971 15 C -0.021 4.021 16 C -0.136 4.136 17 C -0.204 4.204 18 S 0.132 5.868 19 C -0.215 4.215 20 N -0.321 5.321 21 H 0.041 0.959 22 H 0.050 0.950 23 H 0.102 0.898 24 H 0.079 0.921 25 H 0.099 0.901 26 H 0.185 0.815 27 H 0.277 0.723 28 H 0.136 0.864 29 H 0.200 0.800 30 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.965 2.339 -5.964 7.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.008 3.992 3 N -0.171 5.171 4 C -0.219 4.219 5 C -0.070 4.070 6 C -0.481 4.481 7 H 0.091 0.909 8 C -0.193 4.193 9 N -0.498 5.498 10 Si 0.804 3.196 11 H -0.193 1.193 12 H -0.199 1.199 13 H -0.188 1.188 14 C -0.137 4.137 15 C -0.035 4.035 16 C -0.166 4.166 17 C -0.339 4.339 18 S 0.394 5.606 19 C -0.353 4.353 20 N -0.146 5.146 21 H 0.060 0.940 22 H 0.069 0.931 23 H 0.121 0.879 24 H 0.098 0.902 25 H 0.117 0.883 26 H 0.201 0.799 27 H 0.088 0.912 28 H 0.154 0.846 29 H 0.217 0.783 30 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.727 3.065 -6.490 8.594 hybrid contribution 1.176 -1.118 1.278 2.066 sum -3.550 1.947 -5.212 6.600 Atomic orbital electron populations 1.21956 0.93608 1.03533 1.01582 1.21691 0.96220 0.77734 1.03567 1.48011 1.37587 1.09600 1.21933 1.23665 1.02219 0.96322 0.99663 1.19396 0.99805 0.93607 0.94151 1.19001 1.22890 0.97468 1.08764 0.90913 1.26412 0.97937 0.97407 0.97589 1.69515 1.39015 1.18559 1.22673 0.85189 0.77753 0.78390 0.78301 1.19341 1.19882 1.18786 1.21757 1.01601 0.92338 0.98036 1.17051 1.03480 0.90044 0.92911 1.20151 1.04264 0.98952 0.93274 1.25714 1.09287 0.94706 1.04149 1.83546 1.72510 1.08694 0.95838 1.25844 1.10282 0.95510 1.03642 1.76404 1.24686 0.97983 1.15517 0.93964 0.93092 0.87900 0.90230 0.88256 0.79879 0.91241 0.84616 0.78346 0.82669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.41 10.06 71.98 0.72 -3.68 16 2 C 0.13 4.46 7.17 86.38 0.62 5.08 16 3 N -0.38 -18.19 3.63 -345.25 -1.25 -19.45 16 4 C -0.08 -4.16 10.35 84.57 0.88 -3.28 16 5 C -0.06 -3.38 6.09 -19.94 -0.12 -3.50 16 6 C -0.45 -24.96 8.83 23.38 0.21 -24.75 16 7 H 0.07 3.91 6.07 -2.91 -0.02 3.89 16 8 C 0.01 0.69 5.49 85.18 0.47 1.16 16 9 N -0.87 -46.32 10.36 21.80 0.23 -46.09 16 10 Si 0.98 40.77 29.56 68.60 2.03 42.80 16 11 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 12 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 13 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 14 C 0.03 1.52 7.08 44.18 0.31 1.84 16 15 C -0.02 -0.93 5.74 -21.15 -0.12 -1.06 16 16 C -0.14 -4.97 10.01 21.40 0.21 -4.75 16 17 C -0.20 -5.81 11.18 66.65 0.75 -5.06 16 18 S 0.13 3.85 23.32 -56.49 -1.32 2.54 16 19 C -0.22 -8.64 9.92 67.03 0.66 -7.97 16 20 N -0.32 -16.08 12.27 -44.28 -0.54 -16.63 16 21 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.05 1.64 8.13 -2.39 -0.02 1.62 16 23 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 24 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.10 3.08 8.04 -2.39 -0.02 3.06 16 26 H 0.18 10.10 5.77 -2.91 -0.02 10.09 16 27 H 0.28 13.62 8.30 -92.71 -0.77 12.85 16 28 H 0.14 4.85 8.06 -2.91 -0.02 4.83 16 29 H 0.20 3.93 8.06 -2.91 -0.02 3.91 16 30 H 0.16 6.61 6.91 -2.91 -0.02 6.58 16 Total: -1.00 -65.27 276.15 4.88 -60.39 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 1.15 Total: 22.42 kcal Atomic # 6 Polarization: -50.57 SS G_CDS: 4.59 Total: -45.98 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -1.57 Total: -82.16 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -1.32 Total: 2.54 kcal Total: -65.27 4.88 -60.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409438470.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.252 kcal (2) G-P(sol) polarization free energy of solvation -65.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds