Wall clock time and date at job start Mon Mar 30 2020 06:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47256 * 2 1 4 4 N 1.34947 * 126.12603 * 264.95752 * 3 2 1 5 5 H 0.96991 * 126.03811 * 0.04110 * 4 3 2 6 6 N 1.40084 * 107.92200 * 179.79165 * 4 3 2 7 7 C 1.30834 * 108.20772 * 0.41487 * 6 4 3 8 8 C 1.50706 * 125.90270 * 179.85327 * 7 6 4 9 9 F 1.39903 * 109.46746 * 269.69528 * 8 7 6 10 10 F 1.39901 * 109.46962 * 29.69309 * 8 7 6 11 11 F 1.39894 * 109.47464 * 149.69389 * 8 7 6 12 12 C 1.35320 * 126.12504 * 85.00379 * 3 2 1 13 13 C 1.50700 * 126.03814 * 359.94067 * 12 3 2 14 14 C 1.50703 * 109.46918 * 269.99885 * 13 12 3 15 15 H 1.07999 * 120.00257 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99561 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00462 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99721 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47085 * 90.00537 * 18 16 14 20 20 H 1.48498 * 109.46727 * 210.00273 * 18 16 14 21 21 H 1.48501 * 109.46743 * 330.00138 * 18 16 14 22 22 H 1.08999 * 109.47506 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47073 * 299.99953 * 1 2 3 24 24 H 1.08996 * 109.47178 * 59.99849 * 1 2 3 25 25 H 1.08999 * 109.47073 * 240.00047 * 2 1 3 26 26 H 1.08996 * 109.47178 * 120.00151 * 2 1 3 27 27 H 1.08993 * 109.47545 * 30.00228 * 13 12 3 28 28 H 1.09004 * 109.46494 * 150.00773 * 13 12 3 29 29 H 0.96997 * 120.00441 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3879 2.1390 -1.0858 5 1 2.3648 1.8320 -2.0056 6 7 2.7906 3.4080 -0.6503 7 6 2.6881 3.4444 0.6535 8 6 3.0227 4.6209 1.5338 9 9 4.3649 4.5463 1.9216 10 9 2.8069 5.8087 0.8268 11 9 2.2072 4.6000 2.6703 12 6 2.2085 2.2047 1.0889 13 6 1.9357 1.8116 2.5179 14 6 0.5107 2.1535 2.8696 15 1 -0.1331 2.6094 2.1320 16 6 0.0286 1.8832 4.1327 17 7 0.8124 1.3275 5.0308 18 14 -1.7379 2.3064 4.5685 19 1 -2.6154 1.1499 4.2564 20 1 -1.8288 2.6200 6.0172 21 1 -2.1736 3.4859 3.7784 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.0918 0.7393 2.6359 28 1 2.6128 2.3524 3.1790 29 1 0.4731 1.1371 5.9193 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409438936.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:20 Heat of formation + Delta-G solvation = -94.504162 kcal Electronic energy + Delta-G solvation = -18760.540649 eV Core-core repulsion = 15269.928365 eV Total energy + Delta-G solvation = -3490.612284 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.49277 -47.08738 -46.88136 -41.02323 -34.05226 -33.33344 -31.65384 -29.73330 -26.87042 -25.97593 -23.51577 -22.63215 -20.77652 -19.04320 -17.92573 -17.57736 -16.82555 -16.54141 -16.25729 -14.59290 -14.49623 -14.06780 -13.84821 -13.74317 -13.44416 -13.28665 -13.07099 -13.06566 -12.44998 -12.12542 -12.03619 -11.82569 -11.58049 -11.00814 -10.89032 -10.61113 -10.56332 -10.24048 -9.72712 -9.49730 -9.28913 -8.36565 -7.76019 -5.98629 -4.00583 1.97769 2.71872 2.99851 3.32397 3.40190 3.44852 3.48112 4.29983 4.48631 4.64998 5.01250 5.08623 5.30056 5.36800 5.66826 5.74702 5.88536 6.02232 6.22848 6.27773 6.50563 6.82332 7.00885 7.49804 7.56536 7.59714 7.89568 7.96368 8.36879 9.01843 9.62110 11.11299 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.018096 B = 0.011021 C = 0.007920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.958642 B = 2539.906760 C = 3534.494889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.048 4.048 3 C 0.070 3.930 4 N -0.463 5.463 5 H 0.436 0.564 6 N -0.259 5.259 7 C -0.018 4.018 8 C 0.553 3.447 9 F -0.178 7.178 10 F -0.181 7.181 11 F -0.140 7.140 12 C -0.137 4.137 13 C 0.081 3.919 14 C -0.498 4.498 15 H 0.054 0.946 16 C 0.062 3.938 17 N -0.893 5.893 18 Si 0.887 3.113 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 H 0.056 0.944 23 H 0.087 0.913 24 H 0.043 0.957 25 H 0.063 0.937 26 H 0.095 0.905 27 H 0.031 0.969 28 H 0.031 0.969 29 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.537 -0.514 -9.610 9.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.087 4.087 3 C -0.057 4.057 4 N -0.174 5.174 5 H 0.280 0.720 6 N -0.085 5.085 7 C -0.183 4.183 8 C 0.496 3.504 9 F -0.160 7.160 10 F -0.163 7.163 11 F -0.121 7.121 12 C -0.147 4.147 13 C 0.043 3.957 14 C -0.537 4.537 15 H 0.072 0.928 16 C -0.140 4.140 17 N -0.532 5.532 18 Si 0.715 3.285 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 H 0.075 0.925 23 H 0.106 0.894 24 H 0.062 0.938 25 H 0.081 0.919 26 H 0.114 0.886 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.872 0.123 -10.399 10.789 hybrid contribution -1.144 -0.120 0.530 1.266 sum 1.728 0.002 -9.869 10.020 Atomic orbital electron populations 1.21806 0.93825 1.01751 1.03541 1.20086 0.96950 0.88580 1.03069 1.20898 1.02068 0.96225 0.86477 1.46081 1.53164 1.09491 1.08688 0.71997 1.77086 1.21285 0.99365 1.10803 1.21939 1.07494 0.96249 0.92638 1.16960 0.74527 0.80069 0.78825 1.93186 1.34790 1.96305 1.91686 1.93166 1.94579 1.49662 1.78856 1.93384 1.71890 1.96173 1.50632 1.20485 1.04020 0.90617 0.99624 1.17832 0.97361 0.97168 0.83344 1.20933 0.95723 1.40026 0.96996 0.92772 1.24929 0.97376 0.95296 0.96368 1.69938 1.35537 1.43020 1.04730 0.86661 0.85314 0.78786 0.77722 1.20736 1.21217 1.19873 0.92518 0.89408 0.93771 0.91887 0.88623 0.95073 0.95127 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.89 37.15 0.37 -1.85 15 2 C -0.05 -0.69 6.21 -27.89 -0.17 -0.86 15 3 C 0.07 1.22 6.46 -82.26 -0.53 0.69 15 4 N -0.46 -7.28 7.36 33.48 0.25 -7.04 15 5 H 0.44 4.93 8.96 -182.62 -1.64 3.30 15 6 N -0.26 -4.93 12.63 33.67 0.43 -4.50 15 7 C -0.02 -0.37 6.56 -82.40 -0.54 -0.91 15 8 C 0.55 11.28 3.44 36.01 0.12 11.41 15 9 F -0.18 -3.48 17.30 2.25 0.04 -3.44 15 10 F -0.18 -3.48 17.25 2.25 0.04 -3.44 15 11 F -0.14 -3.17 14.78 2.25 0.03 -3.13 15 12 C -0.14 -2.92 5.25 -105.05 -0.55 -3.48 15 13 C 0.08 1.99 4.39 -29.03 -0.13 1.86 15 14 C -0.50 -13.22 7.67 -34.44 -0.26 -13.48 15 15 H 0.05 1.45 7.74 -52.49 -0.41 1.05 15 16 C 0.06 1.68 5.46 -17.82 -0.10 1.59 15 17 N -0.89 -25.56 13.29 55.43 0.74 -24.83 15 18 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 15 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 15 22 H 0.06 0.71 8.14 -51.93 -0.42 0.28 15 23 H 0.09 1.61 7.32 -51.93 -0.38 1.23 15 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 15 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 26 H 0.10 1.47 7.31 -51.93 -0.38 1.09 15 27 H 0.03 0.78 7.25 -51.93 -0.38 0.41 15 28 H 0.03 0.82 7.18 -51.93 -0.37 0.45 15 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 15 LS Contribution 267.28 15.07 4.03 4.03 Total: -1.00 -29.72 267.28 -5.22 -34.95 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: -3.95 Total: -3.67 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -1.79 Total: -5.04 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 1.41 Total: -36.37 kcal Atomic # 9 Polarization: -10.12 SS G_CDS: 0.11 Total: -10.01 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.72 -5.22 -34.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409438936.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.559 kcal (2) G-P(sol) polarization free energy of solvation -29.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds