Wall clock time and date at job start Mon Mar 30 2020 06:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47256 * 2 1 4 4 N 1.34947 * 126.12603 * 264.95752 * 3 2 1 5 5 H 0.96991 * 126.03811 * 0.04110 * 4 3 2 6 6 N 1.40084 * 107.92200 * 179.79165 * 4 3 2 7 7 C 1.30834 * 108.20772 * 0.41487 * 6 4 3 8 8 C 1.50706 * 125.90270 * 179.85327 * 7 6 4 9 9 F 1.39903 * 109.46746 * 269.69528 * 8 7 6 10 10 F 1.39901 * 109.46962 * 29.69309 * 8 7 6 11 11 F 1.39894 * 109.47464 * 149.69389 * 8 7 6 12 12 C 1.35320 * 126.12504 * 85.00379 * 3 2 1 13 13 C 1.50700 * 126.03814 * 359.94067 * 12 3 2 14 14 C 1.50703 * 109.46918 * 269.99885 * 13 12 3 15 15 H 1.07999 * 120.00257 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99561 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00462 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99721 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47085 * 90.00537 * 18 16 14 20 20 H 1.48498 * 109.46727 * 210.00273 * 18 16 14 21 21 H 1.48501 * 109.46743 * 330.00138 * 18 16 14 22 22 H 1.08999 * 109.47506 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47073 * 299.99953 * 1 2 3 24 24 H 1.08996 * 109.47178 * 59.99849 * 1 2 3 25 25 H 1.08999 * 109.47073 * 240.00047 * 2 1 3 26 26 H 1.08996 * 109.47178 * 120.00151 * 2 1 3 27 27 H 1.08993 * 109.47545 * 30.00228 * 13 12 3 28 28 H 1.09004 * 109.46494 * 150.00773 * 13 12 3 29 29 H 0.96997 * 120.00441 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3879 2.1390 -1.0858 5 1 2.3648 1.8320 -2.0056 6 7 2.7906 3.4080 -0.6503 7 6 2.6881 3.4444 0.6535 8 6 3.0227 4.6209 1.5338 9 9 4.3649 4.5463 1.9216 10 9 2.8069 5.8087 0.8268 11 9 2.2072 4.6000 2.6703 12 6 2.2085 2.2047 1.0889 13 6 1.9357 1.8116 2.5179 14 6 0.5107 2.1535 2.8696 15 1 -0.1331 2.6094 2.1320 16 6 0.0286 1.8832 4.1327 17 7 0.8124 1.3275 5.0308 18 14 -1.7379 2.3064 4.5685 19 1 -2.6154 1.1499 4.2564 20 1 -1.8288 2.6200 6.0172 21 1 -2.1736 3.4859 3.7784 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.0918 0.7393 2.6359 28 1 2.6128 2.3524 3.1790 29 1 0.4731 1.1371 5.9193 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409438936.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:20 Heat of formation + Delta-G solvation = -112.979831 kcal Electronic energy + Delta-G solvation = -18761.341814 eV Core-core repulsion = 15269.928365 eV Total energy + Delta-G solvation = -3491.413450 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.083 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -51.12287 -48.67397 -48.57566 -42.50981 -35.66235 -34.97046 -33.37332 -31.28566 -28.62929 -27.57531 -25.13986 -24.23042 -22.32625 -20.58756 -19.54849 -19.20478 -18.34295 -18.31220 -18.01345 -16.45810 -16.06657 -15.56435 -15.41759 -15.23585 -15.05685 -14.78420 -14.74585 -14.57258 -14.30010 -13.95893 -13.55369 -13.36197 -13.11980 -12.79632 -12.57347 -12.12927 -12.10612 -11.75799 -11.54657 -11.48694 -10.76374 -10.46694 -9.36868 -8.07043 -6.15070 0.49416 1.26204 1.38360 1.43814 1.47644 1.56092 1.98953 2.49450 2.75651 3.05665 3.24981 3.39690 3.77908 4.07509 4.26805 4.46441 4.51164 4.71887 4.88845 5.10166 5.24523 5.32278 5.51866 5.59296 5.66253 5.86910 6.19978 6.31271 6.46325 6.93132 7.50661 9.02397 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.018096 B = 0.011021 C = 0.007920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.958642 B = 2539.906760 C = 3534.494889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.048 4.048 3 C 0.096 3.904 4 N -0.434 5.434 5 H 0.460 0.540 6 N -0.264 5.264 7 C -0.034 4.034 8 C 0.553 3.447 9 F -0.175 7.175 10 F -0.174 7.174 11 F -0.158 7.158 12 C -0.180 4.180 13 C 0.096 3.904 14 C -0.496 4.496 15 H 0.047 0.953 16 C 0.012 3.988 17 N -0.928 5.928 18 Si 0.945 3.055 19 H -0.268 1.268 20 H -0.286 1.286 21 H -0.273 1.273 22 H 0.081 0.919 23 H 0.044 0.956 24 H 0.059 0.941 25 H 0.112 0.888 26 H 0.084 0.916 27 H 0.018 0.982 28 H -0.002 1.002 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.811 -1.309 -11.695 11.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.087 4.087 3 C -0.033 4.033 4 N -0.148 5.148 5 H 0.309 0.691 6 N -0.090 5.090 7 C -0.198 4.198 8 C 0.497 3.503 9 F -0.156 7.156 10 F -0.155 7.155 11 F -0.140 7.140 12 C -0.191 4.191 13 C 0.058 3.942 14 C -0.534 4.534 15 H 0.066 0.934 16 C -0.186 4.186 17 N -0.569 5.569 18 Si 0.771 3.229 19 H -0.193 1.193 20 H -0.212 1.212 21 H -0.198 1.198 22 H 0.099 0.901 23 H 0.063 0.937 24 H 0.078 0.922 25 H 0.130 0.870 26 H 0.102 0.898 27 H 0.036 0.964 28 H 0.016 0.984 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.149 -0.667 -12.532 12.732 hybrid contribution -0.880 0.098 1.081 1.397 sum 1.270 -0.569 -11.451 11.535 Atomic orbital electron populations 1.21746 0.93715 1.02982 1.02129 1.20260 0.96853 0.86639 1.04936 1.21210 0.99334 0.97001 0.85712 1.46057 1.51017 1.08146 1.09589 0.69120 1.77036 1.21527 1.00811 1.09667 1.21895 1.08536 0.96085 0.93297 1.16973 0.74409 0.80542 0.78413 1.93183 1.34438 1.96334 1.91686 1.93172 1.94547 1.49256 1.78536 1.93338 1.72529 1.96310 1.51790 1.20259 1.07613 0.92214 0.99027 1.17447 0.95708 0.95698 0.85316 1.21116 0.96551 1.38996 0.96767 0.93442 1.25662 1.01072 0.95417 0.96446 1.70049 1.37285 1.44439 1.05088 0.85741 0.81109 0.78815 0.77206 1.19344 1.21206 1.19820 0.90053 0.93690 0.92207 0.86983 0.89792 0.96382 0.98352 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 9.89 71.98 0.71 -3.22 15 2 C -0.05 -1.24 6.21 29.85 0.19 -1.05 15 3 C 0.10 3.16 6.46 41.41 0.27 3.43 15 4 N -0.43 -12.27 7.36 -48.00 -0.35 -12.63 15 5 H 0.46 8.33 8.96 -213.34 -1.91 6.42 15 6 N -0.26 -9.51 12.63 -47.38 -0.60 -10.11 15 7 C -0.03 -1.40 6.56 43.10 0.28 -1.12 15 8 C 0.55 22.80 3.44 71.24 0.25 23.05 15 9 F -0.17 -6.90 17.30 44.97 0.78 -6.13 15 10 F -0.17 -6.62 17.25 44.97 0.78 -5.84 15 11 F -0.16 -7.40 14.78 44.97 0.66 -6.74 15 12 C -0.18 -7.66 5.25 -20.14 -0.11 -7.77 15 13 C 0.10 4.88 4.39 29.10 0.13 5.01 15 14 C -0.50 -26.81 7.67 25.60 0.20 -26.61 15 15 H 0.05 2.58 7.74 -2.91 -0.02 2.56 15 16 C 0.01 0.66 5.46 84.65 0.46 1.12 15 17 N -0.93 -54.29 13.29 21.45 0.28 -54.00 15 18 Si 0.95 43.62 29.54 68.60 2.03 45.64 15 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 15 20 H -0.29 -13.12 7.11 99.48 0.71 -12.41 15 21 H -0.27 -12.48 7.11 99.48 0.71 -11.77 15 22 H 0.08 1.76 8.14 -2.39 -0.02 1.74 15 23 H 0.04 1.60 7.32 -2.39 -0.02 1.58 15 24 H 0.06 1.39 8.14 -2.39 -0.02 1.37 15 25 H 0.11 1.86 8.14 -2.39 -0.02 1.84 15 26 H 0.08 2.43 7.31 -2.39 -0.02 2.42 15 27 H 0.02 0.94 7.25 -2.39 -0.02 0.92 15 28 H 0.00 -0.10 7.18 -2.39 -0.02 -0.12 15 29 H 0.26 14.54 8.31 -92.71 -0.77 13.77 15 Total: -1.00 -64.92 267.28 5.24 -59.68 By element: Atomic # 1 Polarization: -2.00 SS G_CDS: -0.71 Total: -2.71 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 2.37 Total: -7.17 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -0.67 Total: -76.73 kcal Atomic # 9 Polarization: -20.93 SS G_CDS: 2.22 Total: -18.71 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -64.92 5.24 -59.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409438936.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.303 kcal (2) G-P(sol) polarization free energy of solvation -64.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds