Wall clock time and date at job start Mon Mar 30 2020 06:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.35021 * 126.01631 * 2 1 4 4 H 0.97008 * 125.92588 * 0.02562 * 3 2 1 5 5 N 1.40066 * 108.14104 * 179.97438 * 3 2 1 6 6 C 1.31599 * 108.11520 * 359.97438 * 5 3 2 7 7 C 1.48461 * 126.03602 * 179.97438 * 6 5 3 8 8 C 1.39330 * 122.75703 * 325.00757 * 7 6 5 9 9 C 1.33090 * 114.90872 * 180.02562 * 8 7 6 10 10 S 1.75812 * 109.91292 * 0.02562 * 9 8 7 11 11 C 1.34508 * 122.75459 * 145.05153 * 7 6 5 12 12 C 1.35105 * 126.01224 * 180.29016 * 2 1 3 13 13 C 1.50705 * 126.07610 * 359.97438 * 12 2 1 14 14 C 1.50698 * 109.46976 * 270.18614 * 13 12 2 15 15 H 1.08001 * 120.00495 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99728 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00229 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99778 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47128 * 89.99833 * 18 16 14 20 20 H 1.48502 * 109.47119 * 209.99367 * 18 16 14 21 21 H 1.48501 * 109.47586 * 329.99768 * 18 16 14 22 22 H 1.09002 * 109.47394 * 89.97481 * 1 2 3 23 23 H 1.08996 * 109.47814 * 209.97794 * 1 2 3 24 24 H 1.09009 * 109.47093 * 329.98264 * 1 2 3 25 25 H 1.07998 * 122.54936 * 0.06082 * 8 7 6 26 26 H 1.07996 * 125.04336 * 180.02562 * 9 8 7 27 27 H 1.08001 * 125.22842 * 0.22500 * 11 7 6 28 28 H 1.09003 * 109.47134 * 30.18454 * 13 12 2 29 29 H 1.09001 * 109.46745 * 150.18527 * 13 12 2 30 30 H 0.96999 * 119.99790 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3009 1.0921 0.0000 4 1 2.0002 2.0144 0.0004 5 7 3.6340 0.6622 0.0006 6 6 3.6395 -0.6538 0.0015 7 6 4.8437 -1.5221 0.0018 8 6 6.0164 -1.1850 -0.6706 9 6 6.9986 -2.0771 -0.5664 10 16 6.4726 -3.4343 0.4195 11 6 4.8918 -2.6994 0.6506 12 6 2.3013 -1.0928 -0.0055 13 6 1.8379 -2.5268 -0.0123 14 6 1.6795 -3.0102 1.4063 15 1 1.8935 -2.3457 2.2304 16 6 1.2624 -4.3012 1.6522 17 7 1.0023 -5.1106 0.6488 18 14 1.0668 -4.9005 3.4105 19 1 -0.3175 -4.6292 3.8749 20 1 1.3308 -6.3608 3.4680 21 1 2.0314 -4.1883 4.2866 22 1 -0.3634 0.0005 -1.0277 23 1 -0.3634 -0.8901 0.5134 24 1 -0.3634 0.8899 0.5141 25 1 6.1209 -0.2690 -1.2332 26 1 7.9739 -1.9814 -1.0202 27 1 4.0823 -3.1295 1.2218 28 1 0.8806 -2.5969 -0.5290 29 1 2.5744 -3.1443 -0.5265 30 1 0.7085 -6.0187 0.8218 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409439458.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:20 Heat of formation + Delta-G solvation = 73.270054 kcal Electronic energy + Delta-G solvation = -15468.543128 eV Core-core repulsion = 12969.815691 eV Total energy + Delta-G solvation = -2498.727437 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.12051 -38.59175 -35.49649 -33.39382 -33.04988 -30.06992 -29.55518 -27.40574 -25.24126 -24.64878 -22.35017 -20.14333 -19.43633 -18.42195 -18.11878 -17.89393 -16.45989 -16.17267 -15.75302 -14.75635 -14.31414 -14.07995 -14.03308 -13.80883 -13.65878 -13.40547 -13.20319 -13.01878 -12.83550 -12.62788 -12.39436 -11.90548 -11.68469 -11.49748 -11.31525 -10.54418 -10.50624 -9.57630 -9.23786 -8.94080 -8.08813 -6.20482 0.05975 0.78104 0.90995 1.12399 1.40994 1.42396 1.51156 1.56961 2.09993 2.34400 2.49520 3.19387 3.75043 4.01662 4.22755 4.37678 4.50244 4.69854 4.80299 4.84982 4.87028 5.12880 5.18060 5.30134 5.43801 5.51854 5.63859 5.79843 5.82883 5.86727 6.33746 6.57322 6.83930 6.91027 7.46166 8.98029 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.014985 B = 0.010789 C = 0.006830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.094972 B = 2594.648953 C = 4098.529840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.076 3.924 3 N -0.466 5.466 4 H 0.450 0.550 5 N -0.311 5.311 6 C 0.117 3.883 7 C -0.053 4.053 8 C -0.127 4.127 9 C -0.207 4.207 10 S 0.120 5.880 11 C -0.195 4.195 12 C -0.215 4.215 13 C 0.105 3.895 14 C -0.507 4.507 15 H 0.045 0.955 16 C 0.016 3.984 17 N -0.923 5.923 18 Si 0.945 3.055 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.271 1.271 22 H 0.089 0.911 23 H 0.072 0.928 24 H 0.096 0.904 25 H 0.150 0.850 26 H 0.202 0.798 27 H 0.162 0.838 28 H 0.004 0.996 29 H -0.001 1.001 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.885 8.333 -1.784 10.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.052 4.052 3 N -0.178 5.178 4 H 0.297 0.703 5 N -0.136 5.136 6 C -0.048 4.048 7 C -0.067 4.067 8 C -0.158 4.158 9 C -0.341 4.341 10 S 0.383 5.617 11 C -0.333 4.333 12 C -0.226 4.226 13 C 0.067 3.933 14 C -0.546 4.546 15 H 0.063 0.937 16 C -0.183 4.183 17 N -0.563 5.563 18 Si 0.771 3.229 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.195 1.195 22 H 0.108 0.892 23 H 0.091 0.909 24 H 0.115 0.885 25 H 0.167 0.833 26 H 0.219 0.781 27 H 0.180 0.820 28 H 0.022 0.978 29 H 0.017 0.983 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.229 7.876 -1.347 10.775 hybrid contribution -1.693 0.420 0.377 1.785 sum 5.536 8.297 -0.971 10.021 Atomic orbital electron populations 1.20446 0.85149 1.04389 1.03969 1.21092 0.95794 0.86566 1.01713 1.45951 1.02967 1.08415 1.60456 0.70328 1.77245 0.97641 1.11342 1.27350 1.20375 0.93026 0.90624 1.00822 1.17064 0.93011 0.94340 1.02255 1.20151 0.91574 1.01840 1.02187 1.25777 1.04631 0.97297 1.06438 1.83871 1.05249 1.23326 1.49251 1.26304 1.01968 0.99008 1.06013 1.20536 0.91586 0.97754 1.12732 1.17299 0.94270 0.86122 0.95642 1.21218 1.44223 0.96696 0.92415 0.93713 1.25695 0.95308 0.96998 1.00318 1.70064 1.46804 1.07114 1.32312 0.85750 0.78769 0.77496 0.80933 1.19808 1.20781 1.19531 0.89199 0.90931 0.88500 0.83285 0.78087 0.82033 0.97777 0.98297 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.37 10.03 71.24 0.71 -1.65 16 2 C 0.08 2.82 7.19 41.35 0.30 3.12 16 3 N -0.47 -15.27 7.35 -48.08 -0.35 -15.62 16 4 H 0.45 10.43 8.96 -213.33 -1.91 8.51 16 5 N -0.31 -12.24 12.74 -48.14 -0.61 -12.86 16 6 C 0.12 5.12 6.86 42.54 0.29 5.42 16 7 C -0.05 -2.16 5.65 -21.14 -0.12 -2.28 16 8 C -0.13 -4.21 10.01 21.38 0.21 -4.00 16 9 C -0.21 -5.67 11.19 66.67 0.75 -4.93 16 10 S 0.12 3.81 23.32 -56.49 -1.32 2.49 16 11 C -0.20 -8.19 9.71 66.97 0.65 -7.54 16 12 C -0.22 -9.83 5.29 -19.95 -0.11 -9.93 16 13 C 0.10 5.51 4.19 29.10 0.12 5.63 16 14 C -0.51 -27.83 7.29 25.60 0.19 -27.64 16 15 H 0.04 2.49 7.74 -2.91 -0.02 2.47 16 16 C 0.02 0.85 5.46 84.66 0.46 1.32 16 17 N -0.92 -53.76 13.29 21.45 0.28 -53.48 16 18 Si 0.94 43.32 29.54 68.60 2.03 45.35 16 19 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 23 H 0.07 2.52 7.77 -2.39 -0.02 2.50 16 24 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 25 H 0.15 4.46 8.06 -2.91 -0.02 4.43 16 26 H 0.20 3.74 8.06 -2.91 -0.02 3.72 16 27 H 0.16 7.91 5.63 -2.91 -0.02 7.89 16 28 H 0.00 0.22 7.77 -2.39 -0.02 0.20 16 29 H 0.00 -0.07 7.21 -2.39 -0.02 -0.09 16 30 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -66.53 276.21 2.75 -63.78 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -0.74 Total: 12.83 kcal Atomic # 6 Polarization: -45.95 SS G_CDS: 3.46 Total: -42.49 kcal Atomic # 7 Polarization: -81.27 SS G_CDS: -0.68 Total: -81.96 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -1.32 Total: 2.49 kcal Total: -66.53 2.75 -63.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409439458.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.052 kcal (2) G-P(sol) polarization free energy of solvation -66.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds