Wall clock time and date at job start Mon Mar 30 2020 06:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46736 * 2 1 4 4 N 1.46500 * 109.47223 * 240.00385 * 2 1 3 5 5 N 1.40032 * 126.20422 * 59.68563 * 4 2 1 6 6 C 1.31234 * 109.11092 * 179.85302 * 5 4 2 7 7 C 1.50701 * 125.45984 * 180.15459 * 6 5 4 8 8 F 1.39894 * 109.46978 * 270.29438 * 7 6 5 9 9 F 1.39895 * 109.46941 * 30.30056 * 7 6 5 10 10 F 1.39902 * 109.46967 * 150.29842 * 7 6 5 11 11 C 1.38708 * 109.07764 * 0.40937 * 6 5 4 12 12 C 1.37464 * 126.20373 * 239.99309 * 4 2 1 13 13 C 1.40234 * 126.65627 * 0.02562 * 12 4 2 14 14 H 1.08005 * 120.00256 * 7.10475 * 13 12 4 15 15 C 1.40167 * 119.99783 * 187.10740 * 13 12 4 16 16 N 1.30763 * 119.99762 * 12.81899 * 15 13 12 17 17 Si 1.86795 * 120.00036 * 192.82334 * 15 13 12 18 18 H 1.48500 * 109.47190 * 93.88654 * 17 15 13 19 19 H 1.48500 * 109.47302 * 213.88325 * 17 15 13 20 20 H 1.48503 * 109.47086 * 333.88211 * 17 15 13 21 21 H 1.09002 * 109.47736 * 60.00036 * 1 2 3 22 22 H 1.09005 * 109.46477 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47342 * 299.99736 * 1 2 3 24 24 H 1.08992 * 109.47780 * 119.99917 * 2 1 3 25 25 H 1.08999 * 109.47379 * 60.00404 * 3 2 1 26 26 H 1.09006 * 109.47514 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47349 * 300.00036 * 3 2 1 28 28 H 1.08004 * 126.22914 * 179.73873 * 11 6 5 29 29 H 0.97006 * 119.99702 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1962 5 7 1.7563 -0.3306 -2.5239 6 6 2.3606 -1.1760 -3.3254 7 6 2.3270 -1.1294 -4.8314 8 9 1.2398 -1.8766 -5.2968 9 9 2.1960 0.1978 -5.2540 10 9 3.5141 -1.6661 -5.3411 11 6 3.0305 -2.1226 -2.5644 12 6 2.8120 -1.8127 -1.2188 13 6 3.3056 -2.5115 -0.1077 14 1 2.9765 -2.2472 0.8864 15 6 4.2263 -3.5530 -0.2874 16 7 4.8150 -3.7130 -1.4440 17 14 4.6123 -4.7125 1.1254 18 1 3.7405 -5.9111 1.0344 19 1 6.0357 -5.1288 1.0494 20 1 4.3676 -4.0192 2.4157 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3632 -1.0278 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.6766 1.9563 0.8900 26 1 3.1299 1.4427 0.0005 27 1 1.6765 1.9564 -0.8900 28 1 3.6145 -2.9487 -2.9425 29 1 5.4524 -4.4336 -1.5682 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409442915.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:34 Heat of formation + Delta-G solvation = -100.644796 kcal Electronic energy + Delta-G solvation = -18488.101589 eV Core-core repulsion = 14997.223027 eV Total energy + Delta-G solvation = -3490.878562 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.31140 -46.84094 -46.82620 -39.36337 -34.79214 -33.86834 -30.20781 -28.50183 -26.78908 -25.47309 -25.36780 -21.36933 -20.12291 -18.88376 -17.70176 -17.64173 -17.28502 -16.00945 -15.18570 -14.53545 -13.95819 -13.89669 -13.68340 -13.64214 -13.28594 -13.01397 -13.01196 -12.85263 -12.39299 -12.14490 -11.83282 -11.77367 -11.71050 -11.36409 -11.18178 -10.79859 -10.62276 -10.48177 -10.05542 -9.62123 -9.02719 -8.18074 -7.14388 -6.87857 -4.65033 2.80003 2.98947 3.02544 3.18988 3.28545 3.75754 3.94807 3.97241 4.80506 4.99838 5.04245 5.29145 5.37811 5.57393 5.66518 5.92495 6.01840 6.20259 6.21420 6.51557 6.64650 6.86581 7.02935 7.14544 7.49107 7.71669 8.18503 8.28125 8.57557 8.90447 9.20519 10.07094 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.018036 B = 0.009784 C = 0.006923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.076889 B = 2861.219615 C = 4043.584770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.172 3.828 3 C -0.155 4.155 4 N -0.406 5.406 5 N -0.340 5.340 6 C -0.021 4.021 7 C 0.553 3.447 8 F -0.184 7.184 9 F -0.184 7.184 10 F -0.174 7.174 11 C -0.314 4.314 12 C 0.262 3.738 13 C -0.452 4.452 14 H 0.081 0.919 15 C 0.081 3.919 16 N -0.776 5.776 17 Si 0.924 3.076 18 H -0.267 1.267 19 H -0.275 1.275 20 H -0.262 1.262 21 H 0.063 0.937 22 H 0.056 0.944 23 H 0.060 0.940 24 H 0.095 0.905 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.158 0.842 29 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.611 2.330 1.735 3.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.069 3.931 3 C -0.213 4.213 4 N -0.195 5.195 5 N -0.165 5.165 6 C -0.181 4.181 7 C 0.497 3.503 8 F -0.166 7.166 9 F -0.166 7.166 10 F -0.156 7.156 11 C -0.347 4.347 12 C 0.143 3.857 13 C -0.488 4.488 14 H 0.099 0.901 15 C -0.141 4.141 16 N -0.401 5.401 17 Si 0.748 3.252 18 H -0.192 1.192 19 H -0.200 1.200 20 H -0.186 1.186 21 H 0.082 0.918 22 H 0.075 0.925 23 H 0.079 0.921 24 H 0.113 0.887 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.175 0.825 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.245 3.336 1.681 4.948 hybrid contribution 0.738 -1.250 0.309 1.484 sum -2.507 2.086 1.989 3.820 Atomic orbital electron populations 1.22111 0.95217 1.02241 1.01898 1.20802 0.93888 0.92878 0.85514 1.22089 1.01652 0.95764 1.01841 1.48690 1.44478 1.23665 1.02663 1.76759 1.28082 1.24419 0.87246 1.21320 1.05207 1.00966 0.90558 1.17310 0.73039 0.72835 0.87163 1.93146 1.55899 1.77180 1.90374 1.93134 1.95634 1.36019 1.91779 1.93158 1.47522 1.86291 1.88600 1.21518 1.16153 1.06553 0.90457 1.18711 0.87945 0.84271 0.94737 1.18612 1.23015 1.14331 0.92837 0.90122 1.25799 0.93796 0.97283 0.97199 1.69763 1.19226 1.27170 1.23939 0.86044 0.78318 0.80076 0.80762 1.19198 1.20005 1.18576 0.91809 0.92497 0.92131 0.88749 0.92152 0.92410 0.91820 0.82477 0.90507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.45 37.16 0.35 -2.21 15 2 C 0.17 3.25 3.67 -67.93 -0.25 3.00 15 3 C -0.16 -2.58 9.46 37.16 0.35 -2.23 15 4 N -0.41 -9.69 3.35 -52.16 -0.17 -9.86 15 5 N -0.34 -8.52 12.32 33.51 0.41 -8.10 15 6 C -0.02 -0.52 6.51 -82.67 -0.54 -1.06 15 7 C 0.55 12.27 3.54 36.01 0.13 12.39 15 8 F -0.18 -3.92 17.30 2.25 0.04 -3.88 15 9 F -0.18 -3.92 17.24 2.25 0.04 -3.88 15 10 F -0.17 -3.77 17.01 2.25 0.04 -3.73 15 11 C -0.31 -8.42 9.30 -38.83 -0.36 -8.78 15 12 C 0.26 6.85 6.71 -84.01 -0.56 6.29 15 13 C -0.45 -11.24 9.00 -38.11 -0.34 -11.58 15 14 H 0.08 1.86 6.82 -52.48 -0.36 1.50 15 15 C 0.08 1.92 5.43 -17.28 -0.09 1.83 15 16 N -0.78 -19.22 10.62 55.56 0.59 -18.63 15 17 Si 0.92 17.56 29.58 -169.99 -5.03 12.53 15 18 H -0.27 -5.05 7.11 56.52 0.40 -4.65 15 19 H -0.28 -5.13 7.11 56.52 0.40 -4.73 15 20 H -0.26 -4.85 7.11 56.52 0.40 -4.45 15 21 H 0.06 1.11 8.14 -51.93 -0.42 0.68 15 22 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 24 H 0.09 1.71 6.74 -51.93 -0.35 1.36 15 25 H 0.06 0.79 8.14 -51.93 -0.42 0.36 15 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 15 27 H 0.06 1.12 8.14 -51.93 -0.42 0.69 15 28 H 0.16 4.35 6.07 -52.48 -0.32 4.03 15 29 H 0.28 6.34 8.29 -40.82 -0.34 6.01 15 LS Contribution 268.60 15.07 4.05 4.05 Total: -1.00 -27.49 268.60 -4.05 -31.54 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -2.70 Total: 2.30 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -1.32 Total: -2.34 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.83 Total: -36.60 kcal Atomic # 9 Polarization: -11.61 SS G_CDS: 0.12 Total: -11.49 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.49 -4.05 -31.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409442915.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.103 kcal (2) G-P(sol) polarization free energy of solvation -27.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds