Wall clock time and date at job start Mon Mar 30 2020 06:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46736 * 2 1 4 4 N 1.46500 * 109.47223 * 240.00385 * 2 1 3 5 5 N 1.40032 * 126.20422 * 59.68563 * 4 2 1 6 6 C 1.31234 * 109.11092 * 179.85302 * 5 4 2 7 7 C 1.50701 * 125.45984 * 180.15459 * 6 5 4 8 8 F 1.39894 * 109.46978 * 270.29438 * 7 6 5 9 9 F 1.39895 * 109.46941 * 30.30056 * 7 6 5 10 10 F 1.39902 * 109.46967 * 150.29842 * 7 6 5 11 11 C 1.38708 * 109.07764 * 0.40937 * 6 5 4 12 12 C 1.37464 * 126.20373 * 239.99309 * 4 2 1 13 13 C 1.40234 * 126.65627 * 0.02562 * 12 4 2 14 14 H 1.08005 * 120.00256 * 7.10475 * 13 12 4 15 15 C 1.40167 * 119.99783 * 187.10740 * 13 12 4 16 16 N 1.30763 * 119.99762 * 12.81899 * 15 13 12 17 17 Si 1.86795 * 120.00036 * 192.82334 * 15 13 12 18 18 H 1.48500 * 109.47190 * 93.88654 * 17 15 13 19 19 H 1.48500 * 109.47302 * 213.88325 * 17 15 13 20 20 H 1.48503 * 109.47086 * 333.88211 * 17 15 13 21 21 H 1.09002 * 109.47736 * 60.00036 * 1 2 3 22 22 H 1.09005 * 109.46477 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47342 * 299.99736 * 1 2 3 24 24 H 1.08992 * 109.47780 * 119.99917 * 2 1 3 25 25 H 1.08999 * 109.47379 * 60.00404 * 3 2 1 26 26 H 1.09006 * 109.47514 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47349 * 300.00036 * 3 2 1 28 28 H 1.08004 * 126.22914 * 179.73873 * 11 6 5 29 29 H 0.97006 * 119.99702 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1962 5 7 1.7563 -0.3306 -2.5239 6 6 2.3606 -1.1760 -3.3254 7 6 2.3270 -1.1294 -4.8314 8 9 1.2398 -1.8766 -5.2968 9 9 2.1960 0.1978 -5.2540 10 9 3.5141 -1.6661 -5.3411 11 6 3.0305 -2.1226 -2.5644 12 6 2.8120 -1.8127 -1.2188 13 6 3.3056 -2.5115 -0.1077 14 1 2.9765 -2.2472 0.8864 15 6 4.2263 -3.5530 -0.2874 16 7 4.8150 -3.7130 -1.4440 17 14 4.6123 -4.7125 1.1254 18 1 3.7405 -5.9111 1.0344 19 1 6.0357 -5.1288 1.0494 20 1 4.3676 -4.0192 2.4157 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3632 -1.0278 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.6766 1.9563 0.8900 26 1 3.1299 1.4427 0.0005 27 1 1.6765 1.9564 -0.8900 28 1 3.6145 -2.9487 -2.9425 29 1 5.4524 -4.4336 -1.5682 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409442915.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:33 Heat of formation + Delta-G solvation = -115.966329 kcal Electronic energy + Delta-G solvation = -18488.765981 eV Core-core repulsion = 14997.223027 eV Total energy + Delta-G solvation = -3491.542954 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -51.08533 -48.60263 -48.59337 -41.22124 -36.33541 -35.71099 -32.01234 -30.36659 -28.10894 -27.35150 -27.16798 -23.03358 -22.00341 -20.59734 -19.47605 -19.44441 -19.07047 -17.87577 -16.89056 -16.14974 -15.64444 -15.47865 -15.42333 -15.32899 -15.04725 -14.77322 -14.76953 -14.55963 -14.08326 -13.70903 -13.55433 -13.45830 -13.05084 -12.90755 -12.80228 -12.23359 -12.17913 -11.96810 -11.83967 -11.38485 -10.93296 -10.03668 -9.07556 -8.67314 -6.57611 1.08185 1.42481 1.49888 1.51917 1.59722 2.07569 2.12476 2.26584 3.00724 3.18808 3.21932 3.55972 3.85016 4.15235 4.25241 4.63297 4.72364 4.81897 4.86872 4.97406 5.08311 5.25072 5.30259 5.33370 5.61215 5.82085 6.29405 6.31402 6.69200 7.04654 7.28391 8.30523 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.018036 B = 0.009784 C = 0.006923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.076889 B = 2861.219615 C = 4043.584770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.154 3.846 3 C -0.146 4.146 4 N -0.407 5.407 5 N -0.347 5.347 6 C -0.034 4.034 7 C 0.562 3.438 8 F -0.178 7.178 9 F -0.177 7.177 10 F -0.171 7.171 11 C -0.346 4.346 12 C 0.239 3.761 13 C -0.472 4.472 14 H 0.095 0.905 15 C 0.039 3.961 16 N -0.808 5.808 17 Si 1.002 2.998 18 H -0.264 1.264 19 H -0.269 1.269 20 H -0.250 1.250 21 H 0.050 0.950 22 H 0.043 0.957 23 H 0.103 0.897 24 H 0.102 0.898 25 H 0.103 0.897 26 H 0.041 0.959 27 H 0.050 0.950 28 H 0.141 0.859 29 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.939 2.419 3.593 5.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.053 3.947 3 C -0.203 4.203 4 N -0.197 5.197 5 N -0.172 5.172 6 C -0.195 4.195 7 C 0.506 3.494 8 F -0.159 7.159 9 F -0.158 7.158 10 F -0.153 7.153 11 C -0.379 4.379 12 C 0.119 3.881 13 C -0.508 4.508 14 H 0.113 0.887 15 C -0.180 4.180 16 N -0.434 5.434 17 Si 0.821 3.179 18 H -0.189 1.189 19 H -0.193 1.193 20 H -0.173 1.173 21 H 0.069 0.931 22 H 0.063 0.937 23 H 0.122 0.878 24 H 0.120 0.880 25 H 0.122 0.878 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.159 0.841 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.592 3.459 3.535 6.113 hybrid contribution 0.841 -1.246 -0.264 1.526 sum -2.751 2.212 3.272 4.813 Atomic orbital electron populations 1.22040 0.93136 1.01881 1.03345 1.21327 0.95645 0.93797 0.83902 1.22024 1.00565 0.94426 1.03326 1.49088 1.44050 1.23316 1.03276 1.76648 1.27948 1.24470 0.88144 1.21639 1.05092 1.00687 0.92040 1.16972 0.73300 0.73196 0.85976 1.93153 1.55576 1.77064 1.90135 1.93143 1.95620 1.35524 1.91556 1.93161 1.47443 1.86292 1.88392 1.21508 1.17626 1.07231 0.91563 1.19077 0.88638 0.85289 0.95053 1.19026 1.23574 1.15070 0.93113 0.88713 1.26855 0.92954 0.98299 0.99922 1.69840 1.19550 1.27904 1.26059 0.84889 0.78201 0.77409 0.77376 1.18894 1.19315 1.17312 0.93110 0.93745 0.87830 0.88021 0.87798 0.93999 0.93105 0.84123 0.89695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.48 9.45 71.98 0.68 -3.80 15 2 C 0.15 5.61 3.67 44.99 0.17 5.78 15 3 C -0.15 -4.55 9.46 71.98 0.68 -3.87 15 4 N -0.41 -19.49 3.35 -318.93 -1.07 -20.56 15 5 N -0.35 -17.52 12.32 -47.91 -0.59 -18.11 15 6 C -0.03 -1.75 6.51 42.76 0.28 -1.47 15 7 C 0.56 25.08 3.54 71.24 0.25 25.33 15 8 F -0.18 -7.54 17.30 44.97 0.78 -6.76 15 9 F -0.18 -7.48 17.24 44.97 0.78 -6.71 15 10 F -0.17 -7.49 17.01 44.97 0.77 -6.72 15 11 C -0.35 -19.09 9.30 22.76 0.21 -18.88 15 12 C 0.24 12.67 6.71 39.12 0.26 12.93 15 13 C -0.47 -23.43 9.00 23.22 0.21 -23.22 15 14 H 0.09 4.27 6.82 -2.91 -0.02 4.25 15 15 C 0.04 1.82 5.43 85.32 0.46 2.28 15 16 N -0.81 -40.51 10.62 21.87 0.23 -40.28 15 17 Si 1.00 34.94 29.58 68.60 2.03 36.97 15 18 H -0.26 -9.06 7.11 99.48 0.71 -8.35 15 19 H -0.27 -9.02 7.11 99.48 0.71 -8.31 15 20 H -0.25 -8.18 7.11 99.48 0.71 -7.47 15 21 H 0.05 1.68 8.14 -2.39 -0.02 1.66 15 22 H 0.04 1.45 8.14 -2.38 -0.02 1.44 15 23 H 0.10 2.27 8.14 -2.39 -0.02 2.25 15 24 H 0.10 3.52 6.74 -2.39 -0.02 3.50 15 25 H 0.10 2.32 8.14 -2.39 -0.02 2.30 15 26 H 0.04 1.42 8.14 -2.38 -0.02 1.40 15 27 H 0.05 1.71 8.14 -2.39 -0.02 1.69 15 28 H 0.14 8.11 6.07 -2.91 -0.02 8.09 15 29 H 0.29 13.13 8.29 -92.70 -0.77 12.36 15 Total: -1.00 -59.58 268.60 7.31 -52.28 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 1.18 Total: 14.81 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 3.20 Total: -4.93 kcal Atomic # 7 Polarization: -77.51 SS G_CDS: -1.43 Total: -78.94 kcal Atomic # 9 Polarization: -22.51 SS G_CDS: 2.32 Total: -20.19 kcal Atomic # 14 Polarization: 34.94 SS G_CDS: 2.03 Total: 36.97 kcal Total: -59.58 7.31 -52.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409442915.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.688 kcal (2) G-P(sol) polarization free energy of solvation -59.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds