Wall clock time and date at job start Mon Mar 30 2020 06:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.46540 * 2 1 4 4 N 1.40002 * 126.07075 * 89.98252 * 3 2 1 5 5 C 1.32221 * 108.98409 * 180.02562 * 4 3 2 6 6 C 1.47909 * 125.63988 * 179.97438 * 5 4 3 7 7 C 1.34757 * 125.26935 * 0.04396 * 6 5 4 8 8 C 1.37991 * 114.71026 * 180.02562 * 7 6 5 9 9 C 1.33601 * 115.05699 * 359.97438 * 8 7 6 10 10 S 1.75859 * 109.76099 * 0.02562 * 9 8 7 11 11 C 1.39893 * 108.72364 * 0.23508 * 5 4 3 12 12 C 1.37576 * 126.07473 * 269.99825 * 3 2 1 13 13 C 1.40285 * 126.51753 * 359.94971 * 12 3 2 14 14 H 1.08005 * 120.00024 * 359.97438 * 13 12 3 15 15 C 1.40099 * 119.99857 * 179.97438 * 13 12 3 16 16 N 1.30785 * 120.00014 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99796 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47442 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47043 * 119.99918 * 17 15 13 20 20 H 1.48502 * 109.47232 * 239.99598 * 17 15 13 21 21 H 1.09000 * 109.46787 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47141 * 299.99666 * 1 2 3 23 23 H 1.08998 * 109.47398 * 60.00229 * 1 2 3 24 24 H 1.09003 * 109.46914 * 240.00448 * 2 1 3 25 25 H 1.08998 * 109.47398 * 119.99771 * 2 1 3 26 26 H 1.08005 * 122.64920 * 0.02562 * 7 6 5 27 27 H 1.08000 * 122.47742 * 179.97438 * 8 7 6 28 28 H 1.08001 * 125.12595 * 180.02562 * 9 8 7 29 29 H 1.07999 * 126.26417 * 179.76146 * 11 5 4 30 30 H 0.97004 * 120.00298 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.2926 2.1586 1.1316 5 6 2.7133 3.3504 0.7431 6 6 3.1046 4.4604 1.6389 7 6 3.0891 4.4159 2.9857 8 6 3.4983 5.5786 3.6060 9 6 3.8471 6.5685 2.7793 10 16 3.6618 6.0431 1.1112 11 6 2.7216 3.3899 -0.6552 12 6 2.2882 2.1451 -1.1120 13 6 2.1493 1.7491 -2.4506 14 1 1.7993 0.7548 -2.6860 15 6 2.4647 2.6433 -3.4819 16 7 2.8881 3.8474 -3.1968 17 14 2.2804 2.1156 -5.2644 18 1 1.7886 0.7155 -5.3179 19 1 1.3096 3.0083 -5.9470 20 1 3.5972 2.2036 -5.9453 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8900 26 1 2.7808 3.5394 3.5362 27 1 3.5341 5.6810 4.6805 28 1 4.1910 7.5444 3.0886 29 1 3.0128 4.2295 -1.2689 30 1 3.1061 4.4667 -3.9109 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409443373.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:15 Heat of formation + Delta-G solvation = 89.671810 kcal Electronic energy + Delta-G solvation = -15215.261593 eV Core-core repulsion = 12717.245389 eV Total energy + Delta-G solvation = -2498.016204 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.04572 -36.99663 -33.73458 -33.39322 -30.09254 -28.65919 -27.18417 -25.23235 -23.89054 -22.18860 -19.83511 -19.54524 -18.08765 -16.96532 -16.15470 -15.30312 -14.81776 -14.31575 -13.74077 -13.63443 -12.88287 -12.55223 -12.36030 -11.98860 -11.86918 -11.77289 -11.53151 -11.42476 -11.30931 -11.16248 -10.59721 -10.48090 -10.15376 -9.87545 -9.57831 -8.81429 -8.73361 -7.91082 -7.40540 -6.76390 -6.69366 -4.54676 1.42527 2.19082 2.65099 2.87897 3.03545 3.08089 3.13763 3.70386 3.80980 4.07672 4.58419 5.27612 5.45235 5.49817 5.61729 5.82590 5.87055 6.00996 6.13887 6.16097 6.34627 6.57333 6.68083 6.84830 6.96383 7.03346 7.29199 7.37811 7.73942 7.94410 8.39518 8.55057 8.76879 9.10028 9.48287 10.19760 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.021991 B = 0.007663 C = 0.005790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.923811 B = 3653.014766 C = 4834.422621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.152 3.848 3 N -0.420 5.420 4 N -0.365 5.365 5 C 0.110 3.890 6 C -0.056 4.056 7 C -0.156 4.156 8 C -0.127 4.127 9 C -0.252 4.252 10 S 0.136 5.864 11 C -0.337 4.337 12 C 0.253 3.747 13 C -0.448 4.448 14 H 0.077 0.923 15 C 0.077 3.923 16 N -0.785 5.785 17 Si 0.924 3.076 18 H -0.262 1.262 19 H -0.273 1.273 20 H -0.273 1.273 21 H 0.058 0.942 22 H 0.055 0.945 23 H 0.061 0.939 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.137 0.863 27 H 0.131 0.869 28 H 0.156 0.844 29 H 0.165 0.835 30 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.053 1.060 3.781 3.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.029 3.971 3 N -0.209 5.209 4 N -0.190 5.190 5 C -0.049 4.049 6 C -0.176 4.176 7 C -0.187 4.187 8 C -0.158 4.158 9 C -0.389 4.389 10 S 0.399 5.601 11 C -0.369 4.369 12 C 0.134 3.866 13 C -0.484 4.484 14 H 0.095 0.905 15 C -0.143 4.143 16 N -0.412 5.412 17 Si 0.748 3.252 18 H -0.186 1.186 19 H -0.198 1.198 20 H -0.198 1.198 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.080 0.920 24 H 0.097 0.903 25 H 0.088 0.912 26 H 0.155 0.845 27 H 0.149 0.851 28 H 0.174 0.826 29 H 0.182 0.818 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.037 1.090 3.305 3.480 hybrid contribution -0.178 -0.415 -0.087 0.460 sum -0.215 0.675 3.217 3.294 Atomic orbital electron populations 1.22169 0.96412 1.01063 1.02775 1.21035 0.93707 0.80433 1.01929 1.48573 1.57915 1.10769 1.03624 1.77118 1.30022 1.03732 1.08172 1.19351 1.01463 0.91124 0.92954 1.22200 1.04338 0.96091 0.94943 1.20259 1.05848 0.99584 0.93053 1.19958 1.02474 0.93075 1.00321 1.25628 1.12516 1.03761 0.96948 1.84286 1.63829 1.06414 1.05562 1.22216 1.23256 1.01145 0.90294 1.18692 0.91813 0.89054 0.86999 1.18650 1.41245 1.00211 0.88291 0.90497 1.25750 0.92737 0.94139 1.01650 1.69708 1.31750 1.05270 1.34476 0.86006 0.78743 0.79724 0.80695 1.18602 1.19775 1.19774 0.92298 0.92611 0.91973 0.90349 0.91206 0.84491 0.85148 0.82590 0.81801 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 10.24 37.16 0.38 -2.48 16 2 C 0.15 2.99 6.95 -4.04 -0.03 2.96 16 3 N -0.42 -10.50 3.69 -58.65 -0.22 -10.72 16 4 N -0.37 -9.48 12.51 33.21 0.42 -9.06 16 5 C 0.11 2.85 7.03 -83.12 -0.58 2.27 16 6 C -0.06 -1.24 6.43 -36.86 -0.24 -1.48 16 7 C -0.16 -3.02 10.04 -40.91 -0.41 -3.43 16 8 C -0.13 -2.04 10.16 -41.30 -0.42 -2.46 16 9 C -0.25 -3.91 11.22 29.11 0.33 -3.58 16 10 S 0.14 2.54 23.09 -107.50 -2.48 0.05 16 11 C -0.34 -9.28 9.49 -38.49 -0.37 -9.64 16 12 C 0.25 6.86 6.74 -84.05 -0.57 6.29 16 13 C -0.45 -11.55 9.01 -38.11 -0.34 -11.90 16 14 H 0.08 1.85 7.18 -52.48 -0.38 1.48 16 15 C 0.08 1.88 5.50 -17.30 -0.10 1.79 16 16 N -0.79 -19.95 10.29 55.56 0.57 -19.38 16 17 Si 0.92 18.21 29.56 -169.99 -5.03 13.18 16 18 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 19 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 20 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 21 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 23 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.08 1.45 7.38 -51.93 -0.38 1.07 16 25 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 26 H 0.14 2.62 8.06 -52.48 -0.42 2.20 16 27 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 28 H 0.16 1.89 8.06 -52.49 -0.42 1.47 16 29 H 0.17 4.61 5.71 -52.49 -0.30 4.31 16 30 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 LS Contribution 278.57 15.07 4.20 4.20 Total: -1.00 -29.44 278.57 -8.03 -37.47 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -3.15 Total: 5.91 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -2.34 Total: -21.66 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.77 Total: -39.16 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Atomic # 16 Polarization: 2.54 SS G_CDS: -2.48 Total: 0.05 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.44 -8.03 -37.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409443373.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.146 kcal (2) G-P(sol) polarization free energy of solvation -29.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds