Wall clock time and date at job start Mon Mar 30 2020 06:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99591 * 2 1 4 4 H 1.48502 * 109.47233 * 270.00337 * 3 2 1 5 5 H 1.48502 * 109.47217 * 30.00252 * 3 2 1 6 6 H 1.48502 * 109.47024 * 150.00470 * 3 2 1 7 7 C 1.37878 * 120.00332 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99781 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99914 * 359.97438 * 7 2 1 10 10 S 1.81395 * 109.47122 * 180.02562 * 9 7 2 11 11 C 1.81399 * 103.00382 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47380 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46844 * 180.02562 * 12 11 10 14 14 C 1.32564 * 120.00027 * 125.00305 * 13 12 11 15 15 C 1.47815 * 120.00319 * 179.97438 * 14 13 12 16 16 C 1.39531 * 120.14192 * 179.97438 * 15 14 13 17 17 C 1.37972 * 119.85483 * 179.97438 * 16 15 14 18 18 C 1.38345 * 120.14331 * 359.97438 * 17 16 15 19 19 C 1.38345 * 120.28513 * 0.02562 * 18 17 16 20 20 C 1.37975 * 120.14228 * 0.02562 * 19 18 17 21 21 H 0.96996 * 120.00460 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47488 * 60.00197 * 9 7 2 23 23 H 1.09005 * 109.47022 * 300.00483 * 9 7 2 24 24 H 1.09003 * 109.46682 * 59.99542 * 11 10 9 25 25 H 1.09004 * 109.46683 * 300.00409 * 11 10 9 26 26 H 1.08995 * 109.47382 * 60.00022 * 12 11 10 27 27 H 1.08995 * 109.47037 * 299.99447 * 12 11 10 28 28 H 1.08005 * 120.00327 * 304.99457 * 13 12 11 29 29 H 1.08005 * 120.00176 * 359.97438 * 14 13 12 30 30 H 1.08000 * 120.07490 * 359.96214 * 16 15 14 31 31 H 1.08004 * 119.93207 * 180.02562 * 17 16 15 32 32 H 1.07997 * 119.86073 * 179.74273 * 18 17 16 33 33 H 1.08003 * 119.92854 * 179.97438 * 19 18 17 34 34 H 1.07998 * 120.07404 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 16 2.4300 -3.8778 -0.0005 11 6 1.3519 -5.3366 -0.0013 12 6 2.2088 -6.6041 -0.0008 13 6 1.3130 -7.8160 -0.0020 14 6 1.4496 -8.7402 -0.9425 15 6 0.5714 -9.9292 -0.9435 16 6 0.7123 -10.9035 -1.9324 17 6 -0.1103 -12.0112 -1.9273 18 6 -1.0728 -12.1573 -0.9444 19 6 -1.2176 -11.1949 0.0388 20 6 -0.4020 -10.0820 0.0445 21 1 -0.4850 0.8400 0.0004 22 1 0.6242 -2.5568 -0.8903 23 1 0.6248 -2.5570 0.8897 24 1 0.7230 -5.3231 -0.8915 25 1 0.7224 -5.3236 0.8885 26 1 2.8373 -6.6174 0.8896 27 1 2.8385 -6.6174 -0.8903 28 1 0.5598 -7.9317 0.7633 29 1 2.2026 -8.6245 -1.7081 30 1 1.4634 -10.7907 -2.7001 31 1 -0.0020 -12.7663 -2.6919 32 1 -1.7169 -13.0241 -0.9472 33 1 -1.9711 -11.3146 0.8032 34 1 -0.5157 -9.3316 0.8128 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413016379.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:42 Heat of formation + Delta-G solvation = 1.277236 kcal Electronic energy + Delta-G solvation = -13988.478941 eV Core-core repulsion = 11590.170004 eV Total energy + Delta-G solvation = -2398.308937 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.06754 -36.73267 -35.30685 -33.23475 -31.83342 -30.70062 -29.58060 -25.63772 -24.69097 -23.64609 -22.45593 -20.27765 -18.65721 -17.99366 -17.16016 -16.51710 -16.36397 -16.01140 -15.55078 -15.03514 -14.64786 -14.46130 -14.29264 -14.20225 -13.90778 -13.63932 -13.50439 -12.83629 -12.71251 -12.49104 -12.29756 -12.04115 -11.79953 -11.71102 -11.43229 -11.02938 -10.76054 -10.71943 -9.84916 -9.01520 -8.49734 -8.34676 -6.48325 -0.00457 0.51354 0.99853 1.39676 1.41111 1.53578 1.61530 2.02561 2.36109 2.99737 3.02590 3.71716 3.86056 4.01497 4.09898 4.13990 4.25166 4.33641 4.48473 4.55750 4.59460 4.72962 4.84499 4.92212 4.92288 5.03846 5.11472 5.16598 5.40071 5.54061 5.55665 5.62569 5.71891 5.87040 5.89840 6.12083 6.59318 7.19931 8.77544 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.058319 B = 0.002902 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.003221 B = 9647.297733 C = 9869.070136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.013 3.987 3 Si 0.978 3.022 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.538 4.538 8 H 0.063 0.937 9 C 0.094 3.906 10 S -0.322 6.322 11 C -0.071 4.071 12 C -0.062 4.062 13 C -0.134 4.134 14 C -0.124 4.124 15 C -0.072 4.072 16 C -0.123 4.123 17 C -0.126 4.126 18 C -0.130 4.130 19 C -0.128 4.128 20 C -0.134 4.134 21 H 0.271 0.729 22 H 0.012 0.988 23 H 0.014 0.986 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.122 0.878 29 H 0.127 0.873 30 H 0.136 0.864 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.870 -23.255 -1.689 23.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.188 4.188 3 Si 0.801 3.199 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.576 4.576 8 H 0.081 0.919 9 C -0.054 4.054 10 S -0.095 6.095 11 C -0.219 4.219 12 C -0.100 4.100 13 C -0.153 4.153 14 C -0.143 4.143 15 C -0.072 4.072 16 C -0.141 4.141 17 C -0.144 4.144 18 C -0.148 4.148 19 C -0.146 4.146 20 C -0.152 4.152 21 H 0.080 0.920 22 H 0.031 0.969 23 H 0.032 0.968 24 H 0.091 0.909 25 H 0.097 0.903 26 H 0.104 0.896 27 H 0.096 0.904 28 H 0.139 0.861 29 H 0.145 0.855 30 H 0.154 0.846 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.157 0.843 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.076 -23.096 -1.685 23.158 hybrid contribution -1.255 1.035 0.032 1.627 sum -1.178 -22.061 -1.653 22.154 Atomic orbital electron populations 1.70060 1.07751 1.28634 1.50108 1.25957 0.95910 1.03187 0.93736 0.85246 0.78467 0.77323 0.78831 1.19336 1.19953 1.18886 1.21019 0.93468 0.90235 1.52885 0.91920 1.20717 0.94017 0.92846 0.97797 1.86377 1.21795 1.03227 1.98052 1.23271 1.00059 0.94088 1.04478 1.20331 0.96530 0.89216 1.03960 1.23283 0.99158 0.94067 0.98841 1.21822 0.99389 0.93585 0.99463 1.19281 0.96487 0.95182 0.96207 1.21546 1.00164 0.94052 0.98368 1.21431 0.95592 0.98025 0.99339 1.21564 0.98711 0.99746 0.94748 1.21398 0.99536 0.94081 0.99565 1.21569 0.95930 0.98835 0.98827 0.92030 0.96931 0.96792 0.90888 0.90341 0.89617 0.90397 0.86052 0.85483 0.84641 0.83801 0.83895 0.84280 0.85383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.31 13.29 21.45 0.28 -55.03 16 2 C 0.01 0.73 5.46 84.65 0.46 1.19 16 3 Si 0.98 44.13 29.54 68.60 2.03 46.15 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.54 -31.38 9.13 25.60 0.23 -31.14 16 8 H 0.06 3.63 7.71 -2.91 -0.02 3.61 16 9 C 0.09 5.13 5.70 71.23 0.41 5.53 16 10 S -0.32 -14.30 21.66 -56.49 -1.22 -15.52 16 11 C -0.07 -2.36 5.92 71.98 0.43 -1.94 16 12 C -0.06 -1.62 5.67 29.85 0.17 -1.45 16 13 C -0.13 -3.00 8.94 24.54 0.22 -2.78 16 14 C -0.12 -2.64 9.52 23.66 0.23 -2.42 16 15 C -0.07 -1.50 5.87 -20.12 -0.12 -1.62 16 16 C -0.12 -2.24 9.79 22.52 0.22 -2.02 16 17 C -0.13 -1.94 10.03 22.23 0.22 -1.72 16 18 C -0.13 -1.95 10.04 22.32 0.22 -1.73 16 19 C -0.13 -2.15 10.03 22.23 0.22 -1.93 16 20 C -0.13 -2.66 9.40 22.52 0.21 -2.45 16 21 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 22 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 23 H 0.01 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 26 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.08 2.00 7.81 -2.39 -0.02 1.98 16 28 H 0.12 2.51 6.04 -2.91 -0.02 2.49 16 29 H 0.13 2.44 7.87 -2.91 -0.02 2.41 16 30 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 31 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 32 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 33 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 34 H 0.13 2.33 6.17 -2.91 -0.02 2.31 16 Total: -1.00 -64.97 308.14 5.27 -59.70 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 1.06 Total: 9.16 kcal Atomic # 6 Polarization: -47.60 SS G_CDS: 3.13 Total: -44.47 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: 0.28 Total: -55.03 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: -14.30 SS G_CDS: -1.22 Total: -15.52 kcal Total: -64.97 5.27 -59.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413016379.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.976 kcal (2) G-P(sol) polarization free energy of solvation -64.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds