Wall clock time and date at job start Mon Mar 30 2020 06:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99662 * 2 1 4 4 H 1.48510 * 109.46875 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47570 * 300.00034 * 3 2 1 6 6 H 1.48503 * 109.47090 * 60.00650 * 3 2 1 7 7 C 1.37881 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99520 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00010 * 359.97438 * 7 2 1 10 10 S 1.81398 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.81400 * 103.00086 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46896 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46977 * 179.97438 * 12 11 10 14 14 C 1.32569 * 119.99865 * 127.27868 * 13 12 11 15 15 C 1.47813 * 119.99838 * 8.22628 * 14 13 12 16 16 C 1.39542 * 120.13988 * 216.02460 * 15 14 13 17 17 C 1.37972 * 119.85389 * 180.02562 * 16 15 14 18 18 C 1.38339 * 120.14633 * 0.02562 * 17 16 15 19 19 C 1.38344 * 120.28213 * 0.02562 * 18 17 16 20 20 C 1.37974 * 120.14717 * 359.97438 * 19 18 17 21 21 H 0.97005 * 120.00212 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.46877 * 60.00080 * 9 7 2 23 23 H 1.08996 * 109.47299 * 299.99921 * 9 7 2 24 24 H 1.08994 * 109.47289 * 60.00134 * 11 10 9 25 25 H 1.08997 * 109.46988 * 300.00092 * 11 10 9 26 26 H 1.09003 * 109.47325 * 60.00014 * 12 11 10 27 27 H 1.08997 * 109.47291 * 299.99801 * 12 11 10 28 28 H 1.08001 * 120.00282 * 307.28297 * 13 12 11 29 29 H 1.08003 * 120.00354 * 188.22293 * 14 13 12 30 30 H 1.08003 * 120.06751 * 0.04482 * 16 15 14 31 31 H 1.08000 * 119.92345 * 179.72676 * 17 16 15 32 32 H 1.08002 * 119.85908 * 180.02562 * 18 17 16 33 33 H 1.08006 * 119.92472 * 180.02562 * 19 18 17 34 34 H 1.07993 * 120.07195 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 16 2.4298 -3.8779 -0.0005 11 6 1.3516 -5.3367 -0.0013 12 6 2.2085 -6.6042 -0.0008 13 6 1.3127 -7.8161 -0.0008 14 6 1.4783 -8.7626 -0.9140 15 6 2.6486 -8.7227 -1.8160 16 6 2.5256 -9.1391 -3.1422 17 6 3.6221 -9.0999 -3.9788 18 6 4.8414 -8.6495 -3.5055 19 6 4.9702 -8.2363 -2.1915 20 6 3.8815 -8.2705 -1.3445 21 1 -0.4851 0.8401 -0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8896 24 1 0.7227 -5.3232 -0.8915 25 1 0.7221 -5.3237 0.8884 26 1 2.8370 -6.6174 0.8897 27 1 2.8382 -6.6174 -0.8903 28 1 0.5358 -7.9135 0.7432 29 1 0.7581 -9.5630 -0.9990 30 1 1.5742 -9.4910 -3.5129 31 1 3.5292 -9.4260 -5.0042 32 1 5.6965 -8.6203 -4.1646 33 1 5.9248 -7.8853 -1.8281 34 1 3.9833 -7.9473 -0.3191 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413016381.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:45 Heat of formation + Delta-G solvation = 24.240513 kcal Electronic energy + Delta-G solvation = -14501.672966 eV Core-core repulsion = 12104.359792 eV Total energy + Delta-G solvation = -2397.313174 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.43388 -35.80076 -33.12334 -31.77774 -30.88601 -28.87076 -28.49176 -24.33737 -22.96235 -22.55027 -21.70747 -19.25662 -16.55452 -16.42801 -15.77374 -15.54788 -15.09292 -14.71646 -14.38921 -13.89696 -13.52551 -13.29434 -12.71131 -12.59017 -12.47559 -12.23887 -11.99514 -11.60673 -11.25108 -11.05003 -10.88209 -10.65522 -10.59171 -9.88348 -9.76242 -9.47215 -8.91270 -8.81294 -8.60112 -8.22679 -6.64658 -6.17490 -4.21304 0.98945 1.37400 2.30770 2.77231 3.26302 3.33317 3.40100 3.81788 3.92769 4.37360 4.70298 4.84424 4.91559 5.02906 5.10889 5.19697 5.25860 5.38812 5.41622 5.50961 5.63011 5.87059 5.91980 5.99255 6.11042 6.24664 6.37536 6.40777 6.48955 6.58735 6.78487 6.96742 7.12725 7.14557 7.77587 8.04080 8.80949 9.41587 10.94011 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.032058 B = 0.003994 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.213134 B = 7007.969006 C = 7445.191940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.510 4.510 8 H 0.068 0.932 9 C 0.092 3.908 10 S -0.313 6.313 11 C -0.083 4.083 12 C -0.091 4.091 13 C -0.124 4.124 14 C -0.136 4.136 15 C -0.053 4.053 16 C -0.113 4.113 17 C -0.124 4.124 18 C -0.123 4.123 19 C -0.120 4.120 20 C -0.108 4.108 21 H 0.264 0.736 22 H 0.035 0.965 23 H 0.035 0.965 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.681 -18.781 -3.855 19.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.550 4.550 8 H 0.086 0.914 9 C -0.055 4.055 10 S -0.086 6.086 11 C -0.231 4.231 12 C -0.128 4.128 13 C -0.144 4.144 14 C -0.155 4.155 15 C -0.053 4.053 16 C -0.131 4.131 17 C -0.142 4.142 18 C -0.141 4.141 19 C -0.138 4.138 20 C -0.126 4.126 21 H 0.074 0.926 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.109 0.891 28 H 0.135 0.865 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.141 0.859 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.628 -18.617 -3.855 19.827 hybrid contribution -1.162 0.915 -0.020 1.479 sum 4.466 -17.701 -3.874 18.663 Atomic orbital electron populations 1.69967 1.06160 1.27178 1.49927 1.24974 0.94969 0.99299 0.94713 0.86300 0.80114 0.82560 0.77715 1.19398 1.20741 1.20733 1.20744 0.93518 0.88778 1.51933 0.91412 1.21024 0.93613 0.90870 0.99965 1.86556 1.21595 1.02425 1.98061 1.23141 1.00407 0.95615 1.03948 1.20950 0.97447 0.90520 1.03922 1.23367 0.99601 0.94307 0.97079 1.21617 0.96971 1.00348 0.96524 1.19081 0.93569 0.98926 0.93753 1.21244 0.98615 1.00136 0.93074 1.21057 0.93083 1.00420 0.99595 1.21189 0.97616 0.99404 0.95853 1.21124 0.98791 0.99872 0.94025 1.21519 0.92121 0.98402 1.00544 0.92593 0.94710 0.94705 0.91069 0.91064 0.90275 0.89071 0.86465 0.86248 0.86114 0.86220 0.86269 0.85910 0.85271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.82 5.46 -17.82 -0.10 1.73 16 3 Si 0.91 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -14.71 9.13 -34.44 -0.31 -15.03 16 8 H 0.07 1.96 7.71 -52.49 -0.40 1.55 16 9 C 0.09 2.46 5.70 36.00 0.21 2.67 16 10 S -0.31 -7.01 21.66 -107.50 -2.33 -9.34 16 11 C -0.08 -1.44 5.92 37.16 0.22 -1.22 16 12 C -0.09 -1.29 3.93 -27.88 -0.11 -1.40 16 13 C -0.12 -1.46 9.46 -36.21 -0.34 -1.81 16 14 C -0.14 -1.53 9.80 -37.57 -0.37 -1.89 16 15 C -0.05 -0.64 5.21 -105.01 -0.55 -1.19 16 16 C -0.11 -1.26 9.79 -39.19 -0.38 -1.64 16 17 C -0.12 -1.29 10.03 -39.64 -0.40 -1.69 16 18 C -0.12 -1.30 10.04 -39.51 -0.40 -1.69 16 19 C -0.12 -1.36 10.03 -39.64 -0.40 -1.76 16 20 C -0.11 -1.31 7.30 -39.20 -0.29 -1.60 16 21 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 22 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 25 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 26 H 0.08 1.09 7.95 -51.93 -0.41 0.67 16 27 H 0.09 1.37 4.73 -51.93 -0.25 1.12 16 28 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 29 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 30 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 31 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 33 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 34 H 0.13 1.50 6.13 -52.49 -0.32 1.18 16 LS Contribution 303.35 15.07 4.57 4.57 Total: -1.00 -30.47 303.35 -10.01 -40.48 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -4.75 Total: -0.15 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: -3.22 Total: -26.52 kcal Atomic # 7 Polarization: -26.40 SS G_CDS: 0.74 Total: -25.66 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -7.01 SS G_CDS: -2.33 Total: -9.34 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.47 -10.01 -40.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413016381.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.716 kcal (2) G-P(sol) polarization free energy of solvation -30.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds