Wall clock time and date at job start Mon Mar 30 2020 06:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99662 * 2 1 4 4 H 1.48510 * 109.46875 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47570 * 300.00034 * 3 2 1 6 6 H 1.48503 * 109.47090 * 60.00650 * 3 2 1 7 7 C 1.37881 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99520 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00010 * 359.97438 * 7 2 1 10 10 S 1.81398 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.81400 * 103.00086 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46896 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46977 * 179.97438 * 12 11 10 14 14 C 1.32569 * 119.99865 * 127.27868 * 13 12 11 15 15 C 1.47813 * 119.99838 * 8.22628 * 14 13 12 16 16 C 1.39542 * 120.13988 * 216.02460 * 15 14 13 17 17 C 1.37972 * 119.85389 * 180.02562 * 16 15 14 18 18 C 1.38339 * 120.14633 * 0.02562 * 17 16 15 19 19 C 1.38344 * 120.28213 * 0.02562 * 18 17 16 20 20 C 1.37974 * 120.14717 * 359.97438 * 19 18 17 21 21 H 0.97005 * 120.00212 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.46877 * 60.00080 * 9 7 2 23 23 H 1.08996 * 109.47299 * 299.99921 * 9 7 2 24 24 H 1.08994 * 109.47289 * 60.00134 * 11 10 9 25 25 H 1.08997 * 109.46988 * 300.00092 * 11 10 9 26 26 H 1.09003 * 109.47325 * 60.00014 * 12 11 10 27 27 H 1.08997 * 109.47291 * 299.99801 * 12 11 10 28 28 H 1.08001 * 120.00282 * 307.28297 * 13 12 11 29 29 H 1.08003 * 120.00354 * 188.22293 * 14 13 12 30 30 H 1.08003 * 120.06751 * 0.04482 * 16 15 14 31 31 H 1.08000 * 119.92345 * 179.72676 * 17 16 15 32 32 H 1.08002 * 119.85908 * 180.02562 * 18 17 16 33 33 H 1.08006 * 119.92472 * 180.02562 * 19 18 17 34 34 H 1.07993 * 120.07195 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 16 2.4298 -3.8779 -0.0005 11 6 1.3516 -5.3367 -0.0013 12 6 2.2085 -6.6042 -0.0008 13 6 1.3127 -7.8161 -0.0008 14 6 1.4783 -8.7626 -0.9140 15 6 2.6486 -8.7227 -1.8160 16 6 2.5256 -9.1391 -3.1422 17 6 3.6221 -9.0999 -3.9788 18 6 4.8414 -8.6495 -3.5055 19 6 4.9702 -8.2363 -2.1915 20 6 3.8815 -8.2705 -1.3445 21 1 -0.4851 0.8401 -0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8896 24 1 0.7227 -5.3232 -0.8915 25 1 0.7221 -5.3237 0.8884 26 1 2.8370 -6.6174 0.8897 27 1 2.8382 -6.6174 -0.8903 28 1 0.5358 -7.9135 0.7432 29 1 0.7581 -9.5630 -0.9990 30 1 1.5742 -9.4910 -3.5129 31 1 3.5292 -9.4260 -5.0042 32 1 5.6965 -8.6203 -4.1646 33 1 5.9248 -7.8853 -1.8281 34 1 3.9833 -7.9473 -0.3191 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413016381.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:44 Heat of formation + Delta-G solvation = 9.924583 kcal Electronic energy + Delta-G solvation = -14502.293751 eV Core-core repulsion = 12104.359792 eV Total energy + Delta-G solvation = -2397.933959 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.27762 -36.78367 -35.31024 -32.82580 -31.74801 -30.69791 -29.80197 -25.76644 -24.76924 -23.38811 -22.75567 -20.15424 -18.66208 -17.35886 -17.18787 -16.72267 -16.49684 -16.10415 -15.65634 -14.99252 -14.72779 -14.53748 -14.34689 -14.23360 -13.87593 -13.48029 -13.35679 -12.92734 -12.77783 -12.47352 -12.32974 -11.94971 -11.83384 -11.59801 -11.39848 -10.76870 -10.71502 -10.65879 -9.75380 -9.11010 -8.49482 -8.34960 -6.48516 0.12154 0.53236 0.98724 1.39383 1.39586 1.51897 1.55763 2.03192 2.35999 2.97095 2.99498 3.80931 3.96317 4.03655 4.07576 4.15697 4.21377 4.32018 4.55399 4.60572 4.62559 4.71787 4.88743 4.91662 4.92000 5.09297 5.10943 5.21690 5.46282 5.52191 5.55666 5.65206 5.70786 5.86844 5.90394 6.14903 6.59178 7.19784 8.77529 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.032058 B = 0.003994 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.213134 B = 7007.969006 C = 7445.191940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.014 3.986 3 Si 0.979 3.021 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.537 4.537 8 H 0.062 0.938 9 C 0.093 3.907 10 S -0.322 6.322 11 C -0.070 4.070 12 C -0.081 4.081 13 C -0.136 4.136 14 C -0.124 4.124 15 C -0.075 4.075 16 C -0.122 4.122 17 C -0.130 4.130 18 C -0.129 4.129 19 C -0.135 4.135 20 C -0.125 4.125 21 H 0.271 0.729 22 H 0.011 0.989 23 H 0.014 0.986 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.136 0.864 29 H 0.144 0.856 30 H 0.138 0.862 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.134 0.866 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.171 -19.531 -4.394 20.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.187 4.187 3 Si 0.802 3.198 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.576 4.576 8 H 0.080 0.920 9 C -0.054 4.054 10 S -0.095 6.095 11 C -0.218 4.218 12 C -0.119 4.119 13 C -0.155 4.155 14 C -0.142 4.142 15 C -0.075 4.075 16 C -0.140 4.140 17 C -0.148 4.148 18 C -0.147 4.147 19 C -0.153 4.153 20 C -0.143 4.143 21 H 0.080 0.920 22 H 0.030 0.970 23 H 0.033 0.967 24 H 0.087 0.913 25 H 0.098 0.902 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.153 0.847 29 H 0.162 0.838 30 H 0.156 0.844 31 H 0.161 0.839 32 H 0.158 0.842 33 H 0.152 0.848 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.121 -19.376 -4.391 20.789 hybrid contribution -1.305 1.007 0.092 1.651 sum 4.815 -18.369 -4.299 19.470 Atomic orbital electron populations 1.70067 1.07746 1.28564 1.50138 1.25947 0.95904 1.03152 0.93700 0.85194 0.78732 0.77612 0.78294 1.18899 1.19707 1.19609 1.21044 0.93445 0.90231 1.52857 0.91985 1.20721 0.94037 0.92875 0.97764 1.86381 1.21842 1.03189 1.98041 1.23267 1.00009 0.94253 1.04260 1.20847 0.97302 0.89904 1.03799 1.23286 1.00138 0.93637 0.98473 1.21870 0.96650 1.00449 0.95217 1.19334 0.93897 0.99669 0.94622 1.21547 0.99721 0.99847 0.92859 1.21416 0.92805 0.99823 1.00723 1.21527 0.98593 0.98717 0.95857 1.21389 0.99208 1.00148 0.94575 1.21647 0.92780 0.99068 1.00775 0.92029 0.97020 0.96745 0.91259 0.90214 0.89977 0.89849 0.84662 0.83850 0.84392 0.83889 0.84196 0.84830 0.85501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.38 13.29 21.45 0.28 -55.10 16 2 C 0.01 0.78 5.46 84.66 0.46 1.24 16 3 Si 0.98 44.30 29.54 68.60 2.03 46.33 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.54 -31.59 9.13 25.60 0.23 -31.35 16 8 H 0.06 3.64 7.71 -2.91 -0.02 3.61 16 9 C 0.09 5.17 5.70 71.24 0.41 5.57 16 10 S -0.32 -14.58 21.66 -56.49 -1.22 -15.80 16 11 C -0.07 -2.40 5.92 71.98 0.43 -1.98 16 12 C -0.08 -2.22 3.93 29.85 0.12 -2.11 16 13 C -0.14 -2.96 9.46 24.53 0.23 -2.73 16 14 C -0.12 -2.51 9.80 23.65 0.23 -2.28 16 15 C -0.08 -1.72 5.21 -20.12 -0.10 -1.82 16 16 C -0.12 -2.49 9.79 22.52 0.22 -2.27 16 17 C -0.13 -2.45 10.03 22.23 0.22 -2.23 16 18 C -0.13 -2.52 10.04 22.32 0.22 -2.30 16 19 C -0.14 -2.95 10.03 22.23 0.22 -2.72 16 20 C -0.12 -2.95 7.30 22.52 0.16 -2.79 16 21 H 0.27 14.98 8.31 -92.70 -0.77 14.21 16 22 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 23 H 0.01 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 25 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 26 H 0.08 2.18 7.95 -2.39 -0.02 2.17 16 27 H 0.08 2.46 4.73 -2.39 -0.01 2.45 16 28 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 29 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 30 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 31 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 32 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 33 H 0.13 2.47 8.06 -2.91 -0.02 2.44 16 34 H 0.13 2.92 6.13 -2.91 -0.02 2.90 16 Total: -1.00 -65.67 303.35 5.21 -60.46 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 1.06 Total: 11.86 kcal Atomic # 6 Polarization: -50.81 SS G_CDS: 3.06 Total: -47.75 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: 0.28 Total: -55.10 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: -14.58 SS G_CDS: -1.22 Total: -15.80 kcal Total: -65.67 5.21 -60.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413016381.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.387 kcal (2) G-P(sol) polarization free energy of solvation -65.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds