Wall clock time and date at job start Mon Mar 30 2020 06:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48505 * 109.46678 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47258 * 299.99866 * 3 2 1 6 6 H 1.48493 * 109.47346 * 60.00472 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46912 * 180.02562 * 11 10 9 13 13 N 1.30965 * 126.42960 * 89.71613 * 12 11 10 14 14 C 1.35252 * 105.57960 * 179.86098 * 13 12 11 15 15 C 1.48316 * 126.42070 * 180.14757 * 14 13 12 16 16 C 1.46758 * 127.11979 * 179.97438 * 15 14 13 17 17 C 1.34333 * 106.00262 * 179.83380 * 16 15 14 18 18 O 1.34171 * 109.00563 * 0.43553 * 17 16 15 19 19 C 1.33969 * 110.77351 * 359.70854 * 18 17 16 20 20 N 1.30837 * 107.15335 * 0.40530 * 14 13 12 21 21 O 1.21283 * 110.08462 * 359.74122 * 20 14 13 22 22 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 24 24 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 25 25 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 26 26 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 27 27 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 28 28 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 29 29 H 1.07992 * 126.99706 * 359.97438 * 16 15 14 30 30 H 1.08007 * 125.49719 * 180.10633 * 17 16 15 31 31 H 1.08005 * 125.76558 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 6 2.4594 -6.1326 -0.0018 13 7 2.9695 -6.7203 1.0516 14 6 3.7862 -7.6846 0.5697 15 6 4.5973 -8.6332 1.3711 16 6 5.4872 -9.6847 0.8649 17 6 6.0076 -10.2831 1.9492 18 8 5.5101 -9.7005 3.0508 19 6 4.6657 -8.7126 2.7257 20 7 3.7310 -7.6202 -0.7359 21 8 2.9748 -6.7357 -1.0777 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5566 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 2.8725 -3.6048 0.8878 26 1 2.8712 -3.6040 -0.8921 27 1 0.8543 -5.0449 0.8894 28 1 0.8525 -5.0447 -0.8905 29 1 5.6854 -9.9264 -0.1687 30 1 6.7088 -11.1045 1.9364 31 1 4.1295 -8.0855 3.4227 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594544428.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:41 Heat of formation + Delta-G solvation = 44.079081 kcal Electronic energy + Delta-G solvation = -16534.827308 eV Core-core repulsion = 13592.081185 eV Total energy + Delta-G solvation = -2942.746124 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -46.59430 -43.45699 -37.33229 -36.69004 -34.95354 -33.80254 -32.54442 -30.75517 -29.47727 -26.08644 -25.81539 -23.89095 -22.31140 -22.09899 -21.49824 -19.22847 -19.10244 -18.43326 -17.93931 -17.02579 -16.56098 -16.19364 -16.04962 -15.54277 -14.58945 -14.39604 -14.08241 -13.90796 -13.72214 -13.46616 -13.29959 -13.09693 -12.74812 -12.65016 -12.45797 -12.20057 -11.69581 -11.55720 -11.35884 -11.09815 -10.51804 -10.46742 -9.66819 -8.17827 -6.27061 -0.15154 0.49451 1.02658 1.41758 1.43160 1.55144 1.76063 1.87163 1.96592 2.43279 2.51538 2.86990 3.16472 3.71621 3.90705 4.03140 4.18973 4.21491 4.36540 4.57685 4.67243 4.79244 4.84030 4.95730 5.02951 5.04300 5.20089 5.28202 5.54874 5.76819 5.88598 5.98188 6.27791 6.89326 7.05258 7.41702 8.93763 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.040833 B = 0.003585 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.552117 B = 7808.660606 C = 8089.865973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.959 3.041 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.026 3.974 10 C -0.092 4.092 11 C -0.022 4.022 12 C 0.212 3.788 13 N -0.500 5.500 14 C 0.238 3.762 15 C -0.167 4.167 16 C -0.211 4.211 17 C -0.012 4.012 18 O -0.175 6.175 19 C 0.042 3.958 20 N -0.403 5.403 21 O 0.070 5.930 22 H 0.264 0.736 23 H 0.008 0.992 24 H 0.005 0.995 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.120 0.880 28 H 0.122 0.878 29 H 0.160 0.840 30 H 0.255 0.745 31 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.010 -19.535 3.649 21.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.784 3.216 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.582 4.582 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.131 4.131 11 C -0.060 4.060 12 C -0.008 4.008 13 N -0.234 5.234 14 C -0.032 4.032 15 C -0.170 4.170 16 C -0.231 4.231 17 C -0.077 4.077 18 O -0.070 6.070 19 C -0.030 4.030 20 N -0.114 5.114 21 O 0.013 5.987 22 H 0.073 0.927 23 H 0.026 0.974 24 H 0.023 0.977 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.138 0.862 28 H 0.140 0.860 29 H 0.178 0.822 30 H 0.271 0.729 31 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 9.452 -20.110 3.812 22.545 hybrid contribution -0.044 1.315 -0.514 1.412 sum 9.408 -18.796 3.298 21.276 Atomic orbital electron populations 1.70070 1.07475 1.27656 1.51704 1.25863 0.95742 1.02965 0.94895 0.85493 0.79013 0.79337 0.77780 1.19049 1.20396 1.20424 1.21701 0.93451 0.92589 1.50419 0.92665 1.18994 0.94178 0.91760 0.96220 1.21442 0.98486 0.91956 1.01246 1.20536 0.92911 0.85150 1.07446 1.29274 0.95663 0.96063 0.79818 1.72017 1.12943 1.09220 1.29210 1.23340 0.96930 0.95534 0.87401 1.18936 1.04673 1.00355 0.93069 1.22948 1.00813 0.97722 1.01594 1.24736 1.01099 1.00481 0.81403 1.83957 1.47818 1.39346 1.35834 1.24534 0.93011 0.90696 0.94747 1.74855 1.12578 1.08597 1.15344 1.85260 1.42872 1.34459 1.36061 0.92749 0.97352 0.97672 0.93025 0.92518 0.86214 0.86005 0.82249 0.72914 0.75078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.67 13.29 21.45 0.28 -54.39 16 2 C 0.00 0.19 5.46 84.65 0.46 0.66 16 3 Si 0.96 43.61 29.54 68.60 2.03 45.64 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.54 -29.99 9.11 25.60 0.23 -29.76 16 8 H 0.06 2.98 7.74 -2.91 -0.02 2.96 16 9 C 0.03 1.25 4.97 29.85 0.15 1.40 16 10 C -0.09 -3.51 5.14 30.59 0.16 -3.36 16 11 C -0.02 -0.64 5.84 29.85 0.17 -0.47 16 12 C 0.21 6.62 7.75 88.36 0.68 7.31 16 13 N -0.50 -16.28 11.58 -302.39 -3.50 -19.78 16 14 C 0.24 7.57 8.08 137.23 1.11 8.68 16 15 C -0.17 -4.33 6.33 -18.92 -0.12 -4.45 16 16 C -0.21 -4.28 11.15 23.61 0.26 -4.02 16 17 C -0.01 -0.16 12.04 66.93 0.81 0.65 16 18 O -0.18 -3.04 10.54 1.97 0.02 -3.02 16 19 C 0.04 0.86 12.07 67.27 0.81 1.67 16 20 N -0.40 -13.44 12.21 -59.01 -0.72 -14.16 16 21 O 0.07 2.26 11.29 74.59 0.84 3.10 16 22 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 23 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 24 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 25 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16 26 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.12 3.30 8.14 -2.39 -0.02 3.28 16 28 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 29 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 30 H 0.26 0.87 8.06 -2.91 -0.02 0.84 16 31 H 0.23 3.76 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -68.01 286.77 4.82 -63.19 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: 1.14 Total: 1.13 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: 4.73 Total: -21.70 kcal Atomic # 7 Polarization: -84.40 SS G_CDS: -3.94 Total: -88.33 kcal Atomic # 8 Polarization: -0.79 SS G_CDS: 0.86 Total: 0.08 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -68.01 4.82 -63.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594544428.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.265 kcal (2) G-P(sol) polarization free energy of solvation -68.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds