Wall clock time and date at job start Mon Mar 30 2020 06:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47440 * 2 1 4 4 C 1.53005 * 109.47047 * 239.99918 * 2 1 3 5 5 C 1.50700 * 109.47310 * 175.00328 * 4 2 1 6 6 H 1.08002 * 119.99669 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00085 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99886 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 119.99988 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47531 * 89.99784 * 9 7 5 11 11 H 1.48506 * 109.47346 * 210.00053 * 9 7 5 12 12 H 1.48501 * 109.47398 * 329.99879 * 9 7 5 13 13 S 1.80999 * 109.46961 * 120.00480 * 2 1 3 14 14 C 1.76206 * 99.99838 * 288.92611 * 13 2 1 15 15 C 1.39526 * 120.95586 * 353.89933 * 14 13 2 16 16 C 1.37773 * 119.20997 * 179.77235 * 15 14 13 17 17 N 1.32187 * 121.23105 * 0.52179 * 16 15 14 18 18 C 1.31660 * 122.13077 * 359.73529 * 17 16 15 19 19 C 1.39538 * 120.62749 * 359.97438 * 18 17 16 20 20 C 1.43192 * 120.64732 * 179.97438 * 19 18 17 21 21 N 5.47731 * 103.70296 * 114.62811 * 2 1 3 22 22 H 1.08997 * 109.47289 * 294.12156 * 1 2 3 23 23 H 1.08998 * 109.47328 * 174.12372 * 1 2 3 24 24 H 1.09006 * 109.46976 * 54.11912 * 1 2 3 25 25 H 1.09000 * 109.46915 * 294.99963 * 4 2 1 26 26 H 1.09003 * 109.47154 * 54.99744 * 4 2 1 27 27 H 0.96995 * 119.99924 * 179.97438 * 8 7 5 28 28 H 1.08005 * 120.39255 * 0.02562 * 15 14 13 29 29 H 1.08000 * 119.38296 * 180.24958 * 16 15 14 30 30 H 1.08009 * 119.69191 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6151 -1.3128 6 1 4.0790 -0.0863 -0.5392 7 6 4.2303 -1.1928 -2.3584 8 7 5.5410 -1.0996 -2.4140 9 14 3.3012 -2.1066 -3.6967 10 1 2.9405 -1.1608 -4.7832 11 1 4.1594 -3.1871 -4.2457 12 1 2.0650 -2.6987 -3.1252 13 16 2.1332 -0.8534 1.4778 14 6 1.7046 0.3301 2.7109 15 6 1.1897 1.5783 2.3595 16 6 0.8621 2.4746 3.3533 17 7 1.0364 2.1768 4.6293 18 6 1.5230 1.0167 5.0176 19 6 1.8771 0.0450 4.0809 20 6 2.4069 -1.2167 4.5026 21 7 2.8275 -2.2176 4.8373 22 1 -0.3634 0.4200 0.9379 23 1 -0.3634 -1.0222 -0.1052 24 1 -0.3633 0.6024 -0.8327 25 1 1.7516 -1.7715 -1.2056 26 1 1.6053 -0.2618 -2.1370 27 1 6.0253 -1.5064 -3.1494 28 1 1.0457 1.8373 1.3209 29 1 0.4596 3.4400 3.0845 30 1 1.6494 0.8152 6.0711 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594909334.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:34 Heat of formation + Delta-G solvation = 56.798618 kcal Electronic energy + Delta-G solvation = -14874.552150 eV Core-core repulsion = 12375.110458 eV Total energy + Delta-G solvation = -2499.441692 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.12338 -36.50480 -35.14789 -32.84790 -32.20735 -31.47842 -28.24183 -24.78334 -23.87369 -23.32992 -20.93357 -18.99575 -17.64762 -16.89080 -16.62118 -15.81276 -14.87374 -14.56394 -14.25775 -14.16610 -13.32617 -13.18419 -13.00903 -12.88591 -12.67611 -12.40415 -12.08817 -12.00857 -11.50177 -11.36005 -10.73208 -10.52750 -10.16359 -9.88467 -9.74199 -9.55762 -9.40926 -9.26029 -8.67290 -7.35260 -6.16209 -4.16837 0.52493 1.00717 1.71262 2.54667 2.78205 2.99675 3.20357 3.29748 3.30056 3.79835 3.86504 4.32463 4.32662 4.62270 4.97353 5.12106 5.17041 5.22383 5.31136 5.51017 5.56934 5.62161 5.78688 5.97871 6.16860 6.28656 6.40146 6.81519 6.96885 7.50992 7.54656 7.79569 8.35451 8.88155 9.43349 10.96324 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.028979 B = 0.006270 C = 0.005733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.979504 B = 4464.335839 C = 4882.419730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.075 4.075 3 H 0.097 0.903 4 C 0.002 3.998 5 C -0.529 4.529 6 H 0.081 0.919 7 C 0.073 3.927 8 N -0.894 5.894 9 Si 0.874 3.126 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.265 1.265 13 S -0.015 6.015 14 C -0.009 4.009 15 C -0.195 4.195 16 C 0.141 3.859 17 N -0.502 5.502 18 C 0.170 3.830 19 C -0.085 4.085 20 C 0.259 3.741 21 N -0.405 5.405 22 H 0.055 0.945 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.026 0.974 26 H 0.035 0.965 27 H 0.265 0.735 28 H 0.151 0.849 29 H 0.162 0.838 30 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.726 6.223 8.794 15.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.203 4.203 3 H 0.115 0.885 4 C -0.037 4.037 5 C -0.567 4.567 6 H 0.099 0.901 7 C -0.130 4.130 8 N -0.532 5.532 9 Si 0.701 3.299 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.190 1.190 13 S 0.235 5.765 14 C -0.134 4.134 15 C -0.222 4.222 16 C -0.016 4.016 17 N -0.213 5.213 18 C 0.007 3.993 19 C -0.099 4.099 20 C -0.057 4.057 21 N -0.081 5.081 22 H 0.074 0.926 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.044 0.956 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.169 0.831 29 H 0.180 0.820 30 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -10.554 4.056 9.742 14.925 hybrid contribution -0.749 0.506 -1.798 2.012 sum -11.303 4.562 7.944 14.549 Atomic orbital electron populations 1.22239 0.93983 1.03140 1.01891 1.23697 0.97154 1.02941 0.96543 0.88485 1.19529 0.98216 0.95624 0.90292 1.21083 0.88999 1.36338 1.10247 0.90111 1.24974 0.94719 0.95564 0.97714 1.69895 1.06526 1.44613 1.32122 0.86872 0.80356 0.80177 0.82499 1.20107 1.21129 1.19014 1.86588 1.70604 1.22371 0.96893 1.23054 0.94791 0.98725 0.96796 1.22267 1.04125 0.93375 1.02457 1.22796 0.92497 0.98678 0.87595 1.67791 1.15407 1.19088 1.19013 1.22810 0.90265 0.87019 0.99160 1.16560 1.09633 0.91086 0.92656 1.25204 0.93777 0.92624 0.94103 1.81220 1.08807 1.10454 1.07574 0.92587 0.91633 0.91347 0.95557 0.94745 0.92510 0.83138 0.82041 0.81785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.61 37.16 0.32 -1.71 16 2 C -0.07 -1.27 1.96 -26.73 -0.05 -1.32 16 3 H 0.10 1.59 6.53 -51.92 -0.34 1.25 16 4 C 0.00 0.04 3.51 -27.88 -0.10 -0.06 16 5 C -0.53 -13.99 9.09 -34.44 -0.31 -14.30 16 6 H 0.08 2.32 7.84 -52.49 -0.41 1.91 16 7 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 8 N -0.89 -26.67 13.96 55.43 0.77 -25.89 16 9 Si 0.87 20.63 27.47 -169.99 -4.67 15.97 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 13 S -0.02 -0.27 19.89 -107.50 -2.14 -2.41 16 14 C -0.01 -0.13 5.97 -38.06 -0.23 -0.35 16 15 C -0.19 -2.34 7.86 -39.27 -0.31 -2.65 16 16 C 0.14 1.47 11.15 -17.57 -0.20 1.27 16 17 N -0.50 -5.83 10.34 -13.00 -0.13 -5.96 16 18 C 0.17 1.91 10.92 -17.14 -0.19 1.73 16 19 C -0.08 -1.15 5.77 -106.45 -0.61 -1.77 16 20 C 0.26 3.98 14.43 -22.47 -0.32 3.66 16 21 N -0.40 -6.97 18.54 41.84 0.78 -6.20 16 22 H 0.06 0.64 6.06 -51.93 -0.31 0.33 16 23 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.03 0.58 7.20 -51.93 -0.37 0.21 16 26 H 0.03 0.71 7.57 -51.93 -0.39 0.32 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.15 1.66 4.88 -52.48 -0.26 1.41 16 29 H 0.16 1.16 8.06 -52.49 -0.42 0.73 16 30 H 0.17 1.37 8.06 -52.48 -0.42 0.95 16 LS Contribution 276.48 15.07 4.17 4.17 Total: -1.00 -30.57 276.48 -6.27 -36.84 By element: Atomic # 1 Polarization: 0.01 SS G_CDS: -2.95 Total: -2.94 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -2.10 Total: -13.57 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 1.41 Total: -38.05 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.67 Total: 15.97 kcal Atomic # 16 Polarization: -0.27 SS G_CDS: -2.14 Total: -2.41 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.57 -6.27 -36.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594909334.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.639 kcal (2) G-P(sol) polarization free energy of solvation -30.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds