Wall clock time and date at job start Mon Mar 30 2020 06:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47440 * 2 1 4 4 C 1.53005 * 109.47047 * 239.99918 * 2 1 3 5 5 C 1.50700 * 109.47310 * 175.00328 * 4 2 1 6 6 H 1.08002 * 119.99669 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00085 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99886 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 119.99988 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47531 * 89.99784 * 9 7 5 11 11 H 1.48506 * 109.47346 * 210.00053 * 9 7 5 12 12 H 1.48501 * 109.47398 * 329.99879 * 9 7 5 13 13 S 1.80999 * 109.46961 * 120.00480 * 2 1 3 14 14 C 1.76206 * 99.99838 * 288.92611 * 13 2 1 15 15 C 1.39526 * 120.95586 * 353.89933 * 14 13 2 16 16 C 1.37773 * 119.20997 * 179.77235 * 15 14 13 17 17 N 1.32187 * 121.23105 * 0.52179 * 16 15 14 18 18 C 1.31660 * 122.13077 * 359.73529 * 17 16 15 19 19 C 1.39538 * 120.62749 * 359.97438 * 18 17 16 20 20 C 1.43192 * 120.64732 * 179.97438 * 19 18 17 21 21 N 5.47731 * 103.70296 * 114.62811 * 2 1 3 22 22 H 1.08997 * 109.47289 * 294.12156 * 1 2 3 23 23 H 1.08998 * 109.47328 * 174.12372 * 1 2 3 24 24 H 1.09006 * 109.46976 * 54.11912 * 1 2 3 25 25 H 1.09000 * 109.46915 * 294.99963 * 4 2 1 26 26 H 1.09003 * 109.47154 * 54.99744 * 4 2 1 27 27 H 0.96995 * 119.99924 * 179.97438 * 8 7 5 28 28 H 1.08005 * 120.39255 * 0.02562 * 15 14 13 29 29 H 1.08000 * 119.38296 * 180.24958 * 16 15 14 30 30 H 1.08009 * 119.69191 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6151 -1.3128 6 1 4.0790 -0.0863 -0.5392 7 6 4.2303 -1.1928 -2.3584 8 7 5.5410 -1.0996 -2.4140 9 14 3.3012 -2.1066 -3.6967 10 1 2.9405 -1.1608 -4.7832 11 1 4.1594 -3.1871 -4.2457 12 1 2.0650 -2.6987 -3.1252 13 16 2.1332 -0.8534 1.4778 14 6 1.7046 0.3301 2.7109 15 6 1.1897 1.5783 2.3595 16 6 0.8621 2.4746 3.3533 17 7 1.0364 2.1768 4.6293 18 6 1.5230 1.0167 5.0176 19 6 1.8771 0.0450 4.0809 20 6 2.4069 -1.2167 4.5026 21 7 2.8275 -2.2176 4.8373 22 1 -0.3634 0.4200 0.9379 23 1 -0.3634 -1.0222 -0.1052 24 1 -0.3633 0.6024 -0.8327 25 1 1.7516 -1.7715 -1.2056 26 1 1.6053 -0.2618 -2.1370 27 1 6.0253 -1.5064 -3.1494 28 1 1.0457 1.8373 1.3209 29 1 0.4596 3.4400 3.0845 30 1 1.6494 0.8152 6.0711 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594909334.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:33 Heat of formation + Delta-G solvation = 38.040520 kcal Electronic energy + Delta-G solvation = -14875.365562 eV Core-core repulsion = 12375.110458 eV Total energy + Delta-G solvation = -2500.255104 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.10392 -37.74337 -36.65215 -34.41524 -33.58273 -32.54505 -29.88031 -25.80096 -24.99071 -24.84428 -22.43429 -20.13584 -18.95332 -18.67668 -17.65307 -17.05396 -16.45812 -15.67455 -15.59509 -15.34383 -14.86130 -14.39707 -14.22251 -14.17609 -14.11286 -13.78822 -13.50978 -13.07413 -12.98107 -12.72237 -12.40647 -11.84332 -11.71495 -11.62061 -11.35640 -11.04669 -10.75139 -10.56312 -10.21541 -8.68794 -8.27625 -6.32057 -0.48651 0.02839 0.46943 1.30444 1.34197 1.37744 1.46793 1.56027 1.88724 2.34647 2.74787 2.81033 3.07881 3.49290 3.68156 3.92089 3.98476 4.07812 4.20247 4.43259 4.61712 4.68453 4.85723 4.88289 4.91522 5.05683 5.21300 5.33190 5.51020 5.58864 6.24741 6.32612 6.75861 6.86046 7.31284 8.88139 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.028979 B = 0.006270 C = 0.005733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.979504 B = 4464.335839 C = 4882.419730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.058 4.058 3 H 0.100 0.900 4 C 0.001 3.999 5 C -0.523 4.523 6 H 0.042 0.958 7 C 0.006 3.994 8 N -0.949 5.949 9 Si 0.941 3.059 10 H -0.260 1.260 11 H -0.292 1.292 12 H -0.247 1.247 13 S -0.105 6.105 14 C -0.009 4.009 15 C -0.194 4.194 16 C 0.158 3.842 17 N -0.506 5.506 18 C 0.184 3.816 19 C -0.099 4.099 20 C 0.276 3.724 21 N -0.448 5.448 22 H 0.076 0.924 23 H 0.061 0.939 24 H 0.090 0.910 25 H 0.021 0.979 26 H 0.052 0.948 27 H 0.264 0.736 28 H 0.163 0.837 29 H 0.204 0.796 30 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.637 8.041 8.994 18.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.186 4.186 3 H 0.119 0.881 4 C -0.037 4.037 5 C -0.562 4.562 6 H 0.060 0.940 7 C -0.191 4.191 8 N -0.590 5.590 9 Si 0.765 3.235 10 H -0.185 1.185 11 H -0.218 1.218 12 H -0.171 1.171 13 S 0.144 5.856 14 C -0.133 4.133 15 C -0.221 4.221 16 C 0.001 3.999 17 N -0.216 5.216 18 C 0.022 3.978 19 C -0.113 4.113 20 C -0.040 4.040 21 N -0.124 5.124 22 H 0.094 0.906 23 H 0.080 0.920 24 H 0.109 0.891 25 H 0.039 0.961 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.180 0.820 29 H 0.220 0.780 30 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -13.497 5.894 9.967 17.783 hybrid contribution 0.154 0.103 -1.702 1.712 sum -13.343 5.997 8.265 16.802 Atomic orbital electron populations 1.22190 0.90527 1.03674 1.03939 1.23554 0.99672 1.01840 0.93561 0.88147 1.19466 0.94749 0.96139 0.93357 1.21402 0.91830 1.34462 1.08466 0.93979 1.25938 0.95482 0.96952 1.00712 1.70066 1.08605 1.46884 1.33452 0.85789 0.79339 0.78824 0.79531 1.18453 1.21825 1.17052 1.86805 1.73267 1.25516 1.00032 1.22854 0.96161 0.98663 0.95659 1.22486 1.03559 0.92380 1.03647 1.23448 0.90303 0.99518 0.86607 1.67951 1.15220 1.18776 1.19613 1.23254 0.88450 0.86033 1.00043 1.16725 1.10738 0.90960 0.92840 1.25532 0.92780 0.92670 0.92980 1.81219 1.10440 1.11700 1.09076 0.90553 0.91971 0.89084 0.96110 0.93037 0.92688 0.81967 0.77956 0.78873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.61 71.98 0.62 -2.75 16 2 C -0.06 -1.90 1.96 30.59 0.06 -1.84 16 3 H 0.10 3.16 6.53 -2.39 -0.02 3.14 16 4 C 0.00 0.05 3.51 29.85 0.10 0.16 16 5 C -0.52 -28.32 9.09 25.60 0.23 -28.09 16 6 H 0.04 2.54 7.84 -2.91 -0.02 2.52 16 7 C 0.01 0.35 5.47 84.65 0.46 0.81 16 8 N -0.95 -58.81 13.96 21.45 0.30 -58.51 16 9 Si 0.94 42.61 27.47 68.60 1.88 44.49 16 10 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 11 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 12 H -0.25 -10.33 6.54 99.48 0.65 -9.67 16 13 S -0.10 -3.81 19.89 -56.49 -1.12 -4.93 16 14 C -0.01 -0.24 5.97 23.26 0.14 -0.10 16 15 C -0.19 -4.05 7.86 22.47 0.18 -3.87 16 16 C 0.16 2.59 11.15 84.53 0.94 3.53 16 17 N -0.51 -9.69 10.34 -195.04 -2.02 -11.71 16 18 C 0.18 3.61 10.92 85.03 0.93 4.54 16 19 C -0.10 -2.55 5.77 -21.05 -0.12 -2.68 16 20 C 0.28 8.51 14.43 88.33 1.27 9.79 16 21 N -0.45 -15.83 18.54 19.00 0.35 -15.48 16 22 H 0.08 1.48 6.06 -2.39 -0.01 1.46 16 23 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 25 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 26 H 0.05 2.00 7.57 -2.39 -0.02 1.98 16 27 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 28 H 0.16 3.01 4.88 -2.91 -0.01 3.00 16 29 H 0.20 1.68 8.06 -2.91 -0.02 1.66 16 30 H 0.19 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -69.67 276.48 5.32 -64.35 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: 1.11 Total: 2.30 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: 4.82 Total: -20.51 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -1.36 Total: -85.70 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.88 Total: 44.49 kcal Atomic # 16 Polarization: -3.81 SS G_CDS: -1.12 Total: -4.93 kcal Total: -69.67 5.32 -64.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594909334.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.386 kcal (2) G-P(sol) polarization free energy of solvation -69.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds