Wall clock time and date at job start Mon Mar 30 2020 06:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86806 * 119.99986 * 2 1 4 4 H 1.48501 * 109.46937 * 269.99833 * 3 2 1 5 5 H 1.48501 * 109.46770 * 29.99604 * 3 2 1 6 6 H 1.48500 * 109.47234 * 149.99811 * 3 2 1 7 7 C 1.37877 * 120.00383 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00192 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99997 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47208 * 179.97438 * 9 7 2 11 11 S 1.81398 * 109.46936 * 180.02562 * 10 9 7 12 12 C 1.81405 * 102.99963 * 185.08260 * 11 10 9 13 13 H 1.08994 * 110.26869 * 55.40439 * 12 11 10 14 14 C 1.54348 * 110.30060 * 293.33331 * 12 11 10 15 15 C 1.54349 * 102.39007 * 214.73082 * 14 12 11 16 16 C 1.51368 * 105.17144 * 26.34443 * 15 14 12 17 17 C 1.38498 * 130.39515 * 162.81542 * 16 15 14 18 18 C 1.38103 * 120.21652 * 180.02562 * 17 16 15 19 19 C 1.38254 * 119.93552 * 359.97438 * 18 17 16 20 20 C 1.38096 * 119.93651 * 0.02562 * 19 18 17 21 21 C 1.38221 * 109.75825 * 342.81396 * 16 15 14 22 22 H 0.96992 * 120.00402 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.47066 * 60.00253 * 9 7 2 24 24 H 1.08999 * 109.46934 * 300.00282 * 9 7 2 25 25 H 1.08991 * 109.47289 * 300.00117 * 10 9 7 26 26 H 1.09003 * 109.46715 * 60.00265 * 10 9 7 27 27 H 1.09008 * 110.82093 * 332.95077 * 14 12 11 28 28 H 1.08995 * 110.82295 * 96.30331 * 14 12 11 29 29 H 1.08994 * 110.30584 * 145.26892 * 15 14 12 30 30 H 1.08998 * 110.29964 * 267.42464 * 15 14 12 31 31 H 1.07997 * 119.88787 * 0.02562 * 17 16 15 32 32 H 1.08006 * 120.02780 * 180.02562 * 18 17 16 33 33 H 1.07995 * 120.02912 * 180.02562 * 19 18 17 34 34 H 1.07996 * 119.89731 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 16 1.3385 -5.2330 -0.0002 12 6 2.6591 -6.4667 0.1565 13 1 3.2646 -6.2616 1.0392 14 6 3.5420 -6.4698 -1.1096 15 6 3.9200 -7.9601 -1.2461 16 6 2.7952 -8.7173 -0.5734 17 6 2.4341 -10.0516 -0.6595 18 6 1.3529 -10.5267 0.0564 19 6 0.6283 -9.6684 0.8625 20 6 0.9867 -8.3376 0.9497 21 6 2.0707 -7.8592 0.2325 22 1 -0.4850 0.8399 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.8721 -3.6043 -0.8894 26 1 2.8720 -3.6042 0.8906 27 1 2.9756 -6.1327 -1.9778 28 1 4.4293 -5.8535 -0.9647 29 1 3.9873 -8.2384 -2.2978 30 1 4.8649 -8.1584 -0.7403 31 1 3.0000 -10.7227 -1.2886 32 1 1.0743 -11.5679 -0.0127 33 1 -0.2172 -10.0383 1.4233 34 1 0.4204 -7.6678 1.5798 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604500626.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:56 Heat of formation + Delta-G solvation = -11.054668 kcal Electronic energy + Delta-G solvation = -14861.788871 eV Core-core repulsion = 12462.945183 eV Total energy + Delta-G solvation = -2398.843688 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.96165 -36.61565 -35.78998 -32.93245 -32.37005 -29.98349 -28.37641 -27.26011 -23.66215 -23.25365 -21.92375 -21.74200 -18.68655 -17.61319 -17.36213 -16.53425 -16.21340 -16.00484 -15.64492 -15.54280 -14.64335 -14.29753 -14.18389 -13.83532 -13.62622 -13.60574 -13.03663 -12.89404 -12.70363 -12.38911 -12.22422 -12.15638 -11.97975 -11.77367 -11.62678 -11.23414 -10.76699 -10.61959 -9.73860 -9.45496 -8.66198 -8.24007 -6.38123 0.22447 0.46191 0.93623 1.40533 1.42360 1.53607 1.73321 2.39837 2.83613 3.09156 3.42073 3.45736 3.96821 4.11870 4.15621 4.18253 4.24318 4.32848 4.37116 4.54886 4.63972 4.75930 4.84716 4.86071 4.93229 5.10273 5.17132 5.22826 5.36212 5.47430 5.53453 5.60125 5.69116 5.72256 6.08962 6.09606 6.76162 7.31612 8.87918 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.050390 B = 0.004187 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.527729 B = 6686.489342 C = 7114.155863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.973 3.027 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.068 0.932 9 C 0.044 3.956 10 C -0.046 4.046 11 S -0.310 6.310 12 C -0.010 4.010 13 H 0.098 0.902 14 C -0.116 4.116 15 C -0.071 4.071 16 C -0.096 4.096 17 C -0.114 4.114 18 C -0.114 4.114 19 C -0.129 4.129 20 C -0.114 4.114 21 C -0.101 4.101 22 H 0.266 0.734 23 H -0.006 1.006 24 H -0.006 1.006 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.148 0.852 32 H 0.154 0.846 33 H 0.143 0.857 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.025 -20.748 -1.077 22.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.006 3.994 10 C -0.194 4.194 11 S -0.079 6.079 12 C -0.138 4.138 13 H 0.116 0.884 14 C -0.155 4.155 15 C -0.109 4.109 16 C -0.098 4.098 17 C -0.132 4.132 18 C -0.132 4.132 19 C -0.147 4.147 20 C -0.133 4.133 21 C -0.102 4.102 22 H 0.074 0.926 23 H 0.013 0.987 24 H 0.013 0.987 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.110 0.890 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.166 0.834 32 H 0.172 0.828 33 H 0.161 0.839 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.764 -20.762 -1.133 21.866 hybrid contribution 0.952 1.493 0.363 1.807 sum 7.716 -19.269 -0.770 20.771 Atomic orbital electron populations 1.70115 1.08053 1.28091 1.50957 1.26044 0.95778 1.03611 0.94291 0.85330 0.78604 0.77762 0.78636 1.19553 1.20741 1.18373 1.21548 0.93721 0.91304 1.51627 0.91371 1.18681 0.93700 0.91591 0.95411 1.23299 1.00078 0.92228 1.03801 1.87106 1.20080 1.03418 1.97261 1.22681 0.96172 0.92381 1.02527 0.88437 1.22738 0.99277 0.98099 0.95398 1.21064 0.96366 0.91627 1.01801 1.20864 0.97441 0.94302 0.97185 1.20958 0.97949 0.93866 1.00406 1.21458 0.94957 1.00934 0.95901 1.21326 1.00854 0.92477 1.00003 1.20857 0.96274 0.96634 0.99516 1.20095 0.97382 0.93252 0.99462 0.92554 0.98744 0.98715 0.90337 0.90824 0.90825 0.88976 0.88606 0.88212 0.83382 0.82795 0.83895 0.87052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.68 13.29 21.45 0.28 -57.40 16 2 C 0.00 0.07 5.46 84.66 0.46 0.53 16 3 Si 0.97 44.07 29.54 68.60 2.03 46.10 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.54 -31.08 9.11 25.60 0.23 -30.85 16 8 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 9 C 0.04 2.45 4.98 29.85 0.15 2.60 16 10 C -0.05 -2.00 5.74 71.98 0.41 -1.59 16 11 S -0.31 -12.18 20.85 -56.49 -1.18 -13.36 16 12 C -0.01 -0.28 3.38 30.52 0.10 -0.18 16 13 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 14 C -0.12 -2.81 6.46 31.51 0.20 -2.61 16 15 C -0.07 -1.32 6.77 30.52 0.21 -1.12 16 16 C -0.10 -2.19 6.14 -19.59 -0.12 -2.31 16 17 C -0.11 -2.10 10.04 22.30 0.22 -1.88 16 18 C -0.11 -2.02 10.05 22.24 0.22 -1.80 16 19 C -0.13 -2.73 10.05 22.24 0.22 -2.51 16 20 C -0.11 -3.10 9.75 22.30 0.22 -2.88 16 21 C -0.10 -2.81 5.61 -19.59 -0.11 -2.92 16 22 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 23 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 24 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 25 H 0.08 3.19 8.14 -2.40 -0.02 3.17 16 26 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 27 H 0.07 2.00 7.88 -2.38 -0.02 1.98 16 28 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 32 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 33 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 34 H 0.11 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -67.73 299.83 4.62 -63.11 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 1.06 Total: 9.04 kcal Atomic # 6 Polarization: -49.92 SS G_CDS: 2.43 Total: -47.49 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: 0.28 Total: -57.40 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: -12.18 SS G_CDS: -1.18 Total: -13.36 kcal Total: -67.73 4.62 -63.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604500626.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.053 kcal (2) G-P(sol) polarization free energy of solvation -67.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds