Wall clock time and date at job start Mon Mar 30 2020 06:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99890 * 2 1 4 4 H 1.48500 * 109.47250 * 269.99884 * 3 2 1 5 5 H 1.48497 * 109.47172 * 30.00506 * 3 2 1 6 6 H 1.48505 * 109.46890 * 150.00594 * 3 2 1 7 7 C 1.37877 * 119.99657 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00549 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99732 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47244 * 179.97438 * 9 7 2 11 11 S 1.81401 * 109.47137 * 179.97438 * 10 9 7 12 12 C 1.81404 * 102.99891 * 174.94023 * 11 10 9 13 13 H 1.09001 * 110.34246 * 308.59126 * 12 11 10 14 14 C 1.54339 * 110.30177 * 70.71635 * 12 11 10 15 15 C 1.54357 * 102.38856 * 145.27014 * 14 12 11 16 16 C 1.51364 * 105.16744 * 333.65122 * 15 14 12 17 17 C 1.38495 * 130.38667 * 197.17429 * 16 15 14 18 18 C 1.38110 * 120.21662 * 180.02562 * 17 16 15 19 19 C 1.38253 * 119.93058 * 0.02562 * 18 17 16 20 20 C 1.38102 * 119.93677 * 359.97438 * 19 18 17 21 21 C 1.38220 * 109.76304 * 17.19578 * 16 15 14 22 22 H 0.97002 * 119.99917 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47312 * 59.99599 * 9 7 2 24 24 H 1.09006 * 109.47159 * 299.99467 * 9 7 2 25 25 H 1.08999 * 109.47069 * 59.99725 * 10 9 7 26 26 H 1.09006 * 109.46831 * 299.99942 * 10 9 7 27 27 H 1.08997 * 110.82514 * 263.49157 * 14 12 11 28 28 H 1.08999 * 110.82382 * 27.04533 * 14 12 11 29 29 H 1.09005 * 110.30158 * 214.72878 * 15 14 12 30 30 H 1.08994 * 110.38464 * 92.62051 * 15 14 12 31 31 H 1.07997 * 119.89670 * 0.03457 * 17 16 15 32 32 H 1.08000 * 120.03469 * 179.97438 * 18 17 16 33 33 H 1.07999 * 120.02944 * 179.97438 * 19 18 17 34 34 H 1.08006 * 119.88746 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 16 5.8355 -2.6366 -0.0025 12 6 6.2437 -4.3972 0.1538 13 1 5.7084 -4.8370 0.9953 14 6 5.8973 -5.1450 -1.1512 15 6 7.0128 -6.2091 -1.2292 16 6 8.1783 -5.6177 -0.4656 17 6 9.5194 -5.9634 -0.4660 18 6 10.4157 -5.2716 0.3249 19 6 9.9736 -4.2308 1.1202 20 6 8.6367 -3.8846 1.1219 21 6 7.7364 -4.5767 0.3291 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6804 0.8888 24 1 3.8745 -0.6801 -0.8912 25 1 3.6578 -3.1506 -0.8907 26 1 3.6584 -3.1502 0.8893 27 1 4.9170 -5.6161 -1.0793 28 1 5.9432 -4.4720 -2.0073 29 1 7.2926 -6.3883 -2.2673 30 1 6.6856 -7.1372 -0.7607 31 1 9.8655 -6.7765 -1.0868 32 1 11.4608 -5.5440 0.3227 33 1 10.6730 -3.6890 1.7396 34 1 8.2922 -3.0710 1.7432 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604500627.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:59 Heat of formation + Delta-G solvation = 7.040496 kcal Electronic energy + Delta-G solvation = -14901.176706 eV Core-core repulsion = 12503.117683 eV Total energy + Delta-G solvation = -2398.059023 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.08569 -35.73080 -33.71139 -31.51292 -31.23625 -29.09153 -27.45374 -25.48151 -22.74319 -21.34101 -21.00023 -20.46671 -17.00489 -16.58727 -16.28333 -15.26714 -15.11408 -14.56863 -14.24004 -13.97044 -13.41686 -13.26299 -12.95577 -12.74203 -12.71015 -12.02351 -11.79606 -11.59363 -11.37606 -11.18255 -11.08375 -10.85846 -10.30037 -10.04833 -9.86260 -9.53315 -9.16781 -8.86690 -8.59736 -8.56182 -7.25253 -6.10724 -4.10604 1.17251 1.31417 2.17510 3.09462 3.30045 3.37276 3.42895 3.69611 4.31243 4.41150 4.41535 4.87082 4.91077 5.01092 5.09360 5.17732 5.23497 5.41615 5.47525 5.57266 5.67867 5.82325 5.89154 5.91275 6.01149 6.05829 6.12799 6.35782 6.43450 6.54536 6.58124 6.90809 7.11463 7.23955 7.66147 8.43007 8.90969 9.50210 11.02061 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.043016 B = 0.004553 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.764611 B = 6148.809119 C = 6633.011185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.521 4.521 8 H 0.073 0.927 9 C 0.003 3.997 10 C -0.053 4.053 11 S -0.279 6.279 12 C -0.020 4.020 13 H 0.098 0.902 14 C -0.116 4.116 15 C -0.080 4.080 16 C -0.089 4.089 17 C -0.112 4.112 18 C -0.119 4.119 19 C -0.124 4.124 20 C -0.091 4.091 21 C -0.071 4.071 22 H 0.265 0.735 23 H 0.026 0.974 24 H 0.021 0.979 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.595 -12.219 -0.268 22.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.560 4.560 8 H 0.092 0.908 9 C -0.036 4.036 10 C -0.201 4.201 11 S -0.047 6.047 12 C -0.148 4.148 13 H 0.116 0.884 14 C -0.155 4.155 15 C -0.118 4.118 16 C -0.091 4.091 17 C -0.130 4.130 18 C -0.138 4.138 19 C -0.142 4.142 20 C -0.110 4.110 21 C -0.072 4.072 22 H 0.075 0.925 23 H 0.044 0.956 24 H 0.039 0.961 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 19.099 -11.201 -0.330 22.144 hybrid contribution -0.498 -0.088 0.167 0.532 sum 18.601 -11.289 -0.163 21.759 Atomic orbital electron populations 1.69898 1.06274 1.27106 1.50552 1.24959 0.94733 0.99159 0.94236 0.86790 0.80486 0.83454 0.78761 1.20079 1.21191 1.18791 1.20966 0.88503 0.94733 1.51828 0.90840 1.19367 0.97093 0.89651 0.97507 1.23481 0.88193 1.04424 1.03953 1.86930 1.12348 1.08312 1.97140 1.22561 0.94875 0.96354 1.01032 0.88396 1.22754 0.98650 0.97312 0.96775 1.21069 0.92343 0.98379 0.99977 1.20583 0.94212 0.96625 0.97646 1.20569 0.91867 1.00467 1.00145 1.21033 0.99313 0.96397 0.97017 1.21039 0.95370 0.97901 0.99854 1.20755 0.92588 0.99172 0.98474 1.20012 0.93379 0.96427 0.97396 0.92539 0.95594 0.96089 0.90715 0.90873 0.90094 0.89354 0.90424 0.90144 0.86300 0.86007 0.85857 0.85554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C 0.00 0.07 4.05 -27.88 -0.11 -0.05 16 10 C -0.05 -1.06 5.84 37.16 0.22 -0.84 16 11 S -0.28 -4.97 20.83 -107.50 -2.24 -7.21 16 12 C -0.02 -0.28 3.36 -26.85 -0.09 -0.37 16 13 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 14 C -0.12 -1.42 6.56 -25.32 -0.17 -1.58 16 15 C -0.08 -0.82 6.77 -26.85 -0.18 -1.00 16 16 C -0.09 -1.07 6.14 -104.21 -0.64 -1.71 16 17 C -0.11 -1.18 10.04 -39.53 -0.40 -1.58 16 18 C -0.12 -1.19 10.05 -39.62 -0.40 -1.59 16 19 C -0.12 -1.35 10.05 -39.63 -0.40 -1.75 16 20 C -0.09 -1.18 9.75 -39.54 -0.39 -1.57 16 21 C -0.07 -0.97 5.61 -104.21 -0.58 -1.55 16 22 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 23 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 24 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 25 H 0.07 1.46 8.14 -51.92 -0.42 1.03 16 26 H 0.07 1.44 8.14 -51.92 -0.42 1.01 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.09 1.17 7.88 -51.93 -0.41 0.76 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.13 1.64 8.06 -52.48 -0.42 1.21 16 LS Contribution 296.39 15.07 4.47 4.47 Total: -1.00 -30.71 296.39 -10.23 -40.93 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -4.99 Total: -1.85 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: -3.57 Total: -26.72 kcal Atomic # 7 Polarization: -27.56 SS G_CDS: 0.77 Total: -26.79 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Atomic # 16 Polarization: -4.97 SS G_CDS: -2.24 Total: -7.21 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.71 -10.23 -40.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604500627.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.972 kcal (2) G-P(sol) polarization free energy of solvation -30.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds