Wall clock time and date at job start Mon Mar 30 2020 06:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99890 * 2 1 4 4 H 1.48500 * 109.47250 * 269.99884 * 3 2 1 5 5 H 1.48497 * 109.47172 * 30.00506 * 3 2 1 6 6 H 1.48505 * 109.46890 * 150.00594 * 3 2 1 7 7 C 1.37877 * 119.99657 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00549 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99732 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47244 * 179.97438 * 9 7 2 11 11 S 1.81401 * 109.47137 * 179.97438 * 10 9 7 12 12 C 1.81404 * 102.99891 * 174.94023 * 11 10 9 13 13 H 1.09001 * 110.34246 * 308.59126 * 12 11 10 14 14 C 1.54339 * 110.30177 * 70.71635 * 12 11 10 15 15 C 1.54357 * 102.38856 * 145.27014 * 14 12 11 16 16 C 1.51364 * 105.16744 * 333.65122 * 15 14 12 17 17 C 1.38495 * 130.38667 * 197.17429 * 16 15 14 18 18 C 1.38110 * 120.21662 * 180.02562 * 17 16 15 19 19 C 1.38253 * 119.93058 * 0.02562 * 18 17 16 20 20 C 1.38102 * 119.93677 * 359.97438 * 19 18 17 21 21 C 1.38220 * 109.76304 * 17.19578 * 16 15 14 22 22 H 0.97002 * 119.99917 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47312 * 59.99599 * 9 7 2 24 24 H 1.09006 * 109.47159 * 299.99467 * 9 7 2 25 25 H 1.08999 * 109.47069 * 59.99725 * 10 9 7 26 26 H 1.09006 * 109.46831 * 299.99942 * 10 9 7 27 27 H 1.08997 * 110.82514 * 263.49157 * 14 12 11 28 28 H 1.08999 * 110.82382 * 27.04533 * 14 12 11 29 29 H 1.09005 * 110.30158 * 214.72878 * 15 14 12 30 30 H 1.08994 * 110.38464 * 92.62051 * 15 14 12 31 31 H 1.07997 * 119.89670 * 0.03457 * 17 16 15 32 32 H 1.08000 * 120.03469 * 179.97438 * 18 17 16 33 33 H 1.07999 * 120.02944 * 179.97438 * 19 18 17 34 34 H 1.08006 * 119.88746 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 16 5.8355 -2.6366 -0.0025 12 6 6.2437 -4.3972 0.1538 13 1 5.7084 -4.8370 0.9953 14 6 5.8973 -5.1450 -1.1512 15 6 7.0128 -6.2091 -1.2292 16 6 8.1783 -5.6177 -0.4656 17 6 9.5194 -5.9634 -0.4660 18 6 10.4157 -5.2716 0.3249 19 6 9.9736 -4.2308 1.1202 20 6 8.6367 -3.8846 1.1219 21 6 7.7364 -4.5767 0.3291 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6804 0.8888 24 1 3.8745 -0.6801 -0.8912 25 1 3.6578 -3.1506 -0.8907 26 1 3.6584 -3.1502 0.8893 27 1 4.9170 -5.6161 -1.0793 28 1 5.9432 -4.4720 -2.0073 29 1 7.2926 -6.3883 -2.2673 30 1 6.6856 -7.1372 -0.7607 31 1 9.8655 -6.7765 -1.0868 32 1 11.4608 -5.5440 0.3227 33 1 10.6730 -3.6890 1.7396 34 1 8.2922 -3.0710 1.7432 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604500627.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:58 Heat of formation + Delta-G solvation = -8.197151 kcal Electronic energy + Delta-G solvation = -14901.837460 eV Core-core repulsion = 12503.117683 eV Total energy + Delta-G solvation = -2398.719777 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.96610 -36.61596 -35.77681 -33.30797 -32.37593 -29.99512 -28.41276 -27.45477 -23.63046 -22.95216 -21.90661 -21.72430 -19.15657 -17.60157 -17.36180 -16.45681 -16.18914 -16.01426 -15.68746 -15.57963 -14.82562 -14.31531 -14.24688 -14.07291 -13.70643 -13.63143 -13.17443 -12.95731 -12.71092 -12.29440 -12.18322 -12.00189 -11.89923 -11.79574 -11.64370 -11.42018 -10.83178 -10.80648 -9.74065 -9.46002 -8.67767 -8.35150 -6.40587 0.21266 0.46209 0.90841 1.33620 1.35029 1.47512 1.66883 2.31938 2.83536 2.99951 3.41286 3.44268 3.96144 4.11574 4.15295 4.18429 4.19155 4.25531 4.32562 4.54024 4.63780 4.75686 4.76582 4.85840 4.92674 5.10012 5.15483 5.16983 5.22832 5.28274 5.51522 5.53447 5.60195 5.68876 6.08794 6.17511 6.64840 7.24105 8.80924 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.043016 B = 0.004553 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.764611 B = 6148.809119 C = 6633.011185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.014 3.986 3 Si 0.945 3.055 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.253 1.253 7 C -0.532 4.532 8 H 0.040 0.960 9 C 0.009 3.991 10 C -0.047 4.047 11 S -0.296 6.296 12 C -0.010 4.010 13 H 0.097 0.903 14 C -0.116 4.116 15 C -0.072 4.072 16 C -0.096 4.096 17 C -0.115 4.115 18 C -0.115 4.115 19 C -0.129 4.129 20 C -0.112 4.112 21 C -0.100 4.100 22 H 0.269 0.731 23 H 0.022 0.978 24 H 0.021 0.979 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.147 0.853 32 H 0.153 0.847 33 H 0.144 0.856 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.442 -13.042 -0.715 25.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.184 4.184 3 Si 0.768 3.232 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.177 1.177 7 C -0.571 4.571 8 H 0.059 0.941 9 C -0.030 4.030 10 C -0.195 4.195 11 S -0.065 6.065 12 C -0.138 4.138 13 H 0.115 0.885 14 C -0.155 4.155 15 C -0.110 4.110 16 C -0.098 4.098 17 C -0.133 4.133 18 C -0.133 4.133 19 C -0.146 4.146 20 C -0.131 4.131 21 C -0.102 4.102 22 H 0.078 0.922 23 H 0.040 0.960 24 H 0.039 0.961 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.107 0.893 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.165 0.835 32 H 0.171 0.829 33 H 0.162 0.838 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 21.946 -12.030 -0.777 25.039 hybrid contribution -1.310 0.038 0.327 1.351 sum 20.636 -11.991 -0.449 23.871 Atomic orbital electron populations 1.70030 1.08058 1.28381 1.51923 1.25878 0.95574 1.03172 0.93810 0.85729 0.79388 0.78662 0.79388 1.18972 1.20351 1.17730 1.21269 0.90844 0.93632 1.51362 0.94133 1.19206 0.94402 0.92322 0.97074 1.23161 0.90582 1.01765 1.03995 1.86872 1.09451 1.12899 1.97237 1.22676 0.95919 0.93027 1.02217 0.88494 1.22745 1.00069 0.97611 0.95113 1.21071 0.90866 0.98005 1.01074 1.20846 0.95389 0.96258 0.97308 1.20951 0.91177 1.00974 1.00163 1.21457 1.00866 0.95273 0.95666 1.21335 0.94752 0.98358 1.00201 1.20865 0.93802 0.99453 0.98955 1.20076 0.92780 0.98133 0.99162 0.92183 0.95972 0.96092 0.90557 0.91027 0.89301 0.90457 0.88647 0.88444 0.83547 0.82896 0.83834 0.86702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.09 13.96 21.45 0.30 -58.79 16 2 C 0.01 0.81 5.47 84.65 0.46 1.27 16 3 Si 0.95 45.12 27.47 68.60 1.88 47.00 16 4 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.25 -11.60 6.54 99.48 0.65 -10.95 16 7 C -0.53 -30.96 9.66 25.60 0.25 -30.71 16 8 H 0.04 2.55 7.99 -2.91 -0.02 2.53 16 9 C 0.01 0.42 4.05 29.85 0.12 0.54 16 10 C -0.05 -1.92 5.84 71.98 0.42 -1.50 16 11 S -0.30 -10.56 20.83 -56.49 -1.18 -11.73 16 12 C -0.01 -0.29 3.36 30.51 0.10 -0.18 16 13 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 14 C -0.12 -2.71 6.56 31.51 0.21 -2.50 16 15 C -0.07 -1.30 6.77 30.52 0.21 -1.10 16 16 C -0.10 -2.08 6.14 -19.60 -0.12 -2.20 16 17 C -0.11 -2.01 10.04 22.30 0.22 -1.79 16 18 C -0.11 -1.89 10.05 22.24 0.22 -1.67 16 19 C -0.13 -2.52 10.05 22.24 0.22 -2.30 16 20 C -0.11 -2.81 9.75 22.30 0.22 -2.59 16 21 C -0.10 -2.62 5.61 -19.60 -0.11 -2.73 16 22 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 23 H 0.02 1.09 7.20 -2.39 -0.02 1.07 16 24 H 0.02 1.02 7.57 -2.38 -0.02 1.00 16 25 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 26 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 27 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.08 1.98 7.88 -2.39 -0.02 1.96 16 29 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 32 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 33 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.11 3.02 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -66.96 296.39 4.44 -62.52 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 1.01 Total: 8.45 kcal Atomic # 6 Polarization: -49.88 SS G_CDS: 2.43 Total: -47.45 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: 0.30 Total: -58.79 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.88 Total: 47.00 kcal Atomic # 16 Polarization: -10.56 SS G_CDS: -1.18 Total: -11.73 kcal Total: -66.96 4.44 -62.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604500627.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.319 kcal (2) G-P(sol) polarization free energy of solvation -66.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds