Wall clock time and date at job start Mon Mar 30 2020 06:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99929 * 2 1 4 4 C 1.52999 * 109.43891 * 294.79499 * 3 2 1 5 5 F 1.39904 * 109.47210 * 59.54386 * 4 3 2 6 6 F 1.39901 * 109.47135 * 179.54487 * 4 3 2 7 7 F 1.39902 * 109.47222 * 299.54198 * 4 3 2 8 8 C 1.52849 * 109.44145 * 174.90676 * 3 2 1 9 9 C 1.50540 * 110.05915 * 288.28486 * 8 3 2 10 10 C 1.34067 * 120.84503 * 325.19202 * 9 8 3 11 11 C 1.40670 * 120.63425 * 1.41346 * 10 9 8 12 12 C 1.38606 * 119.95195 * 16.76409 * 11 10 9 13 13 C 1.38546 * 120.12841 * 181.83312 * 12 11 10 14 14 H 1.07997 * 119.99808 * 144.13870 * 13 12 11 15 15 C 1.40741 * 119.99897 * 324.14917 * 13 12 11 16 16 N 1.30502 * 119.99913 * 166.27451 * 15 13 12 17 17 Si 1.86802 * 119.99990 * 346.26371 * 15 13 12 18 18 H 1.48503 * 109.47001 * 87.47875 * 17 15 13 19 19 H 1.48499 * 109.46936 * 207.47720 * 17 15 13 20 20 H 1.48494 * 109.47277 * 327.47941 * 17 15 13 21 21 H 1.08999 * 109.47353 * 308.14621 * 1 2 3 22 22 H 1.08996 * 109.47385 * 68.15171 * 1 2 3 23 23 H 1.09009 * 109.46962 * 188.14762 * 1 2 3 24 24 H 1.08999 * 109.36642 * 48.45197 * 8 3 2 25 25 H 1.09002 * 109.36838 * 168.08743 * 8 3 2 26 26 H 1.08000 * 119.57928 * 145.21327 * 9 8 3 27 27 H 1.08007 * 119.68459 * 181.39215 * 10 9 8 28 28 H 1.08005 * 120.02201 * 196.78654 * 11 10 9 29 29 H 0.96998 * 119.99871 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6646 2.0167 -1.3098 5 9 0.2745 2.1153 -1.4342 6 9 2.2246 3.2988 -1.3061 7 9 2.1785 1.2865 -2.3867 8 6 3.5287 1.1863 0.1280 9 6 3.8969 0.7525 1.5217 10 6 3.1836 1.1625 2.5802 11 6 2.0552 1.9848 2.4092 12 6 1.4641 2.0979 1.1606 13 6 0.3759 2.9361 0.9796 14 1 0.2621 3.4810 0.0542 15 6 -0.5810 3.0775 2.0019 16 7 -1.4493 4.0505 1.9528 17 14 -0.6085 1.8723 3.4288 18 1 0.3130 2.3445 4.4934 19 1 -1.9873 1.7803 3.9726 20 1 -0.1729 0.5341 2.9550 21 1 -0.3634 0.6347 0.8082 22 1 -0.3634 0.3824 -0.9538 23 1 -0.3633 -1.0174 0.1457 24 1 3.8951 0.4509 -0.5882 25 1 3.9862 2.1530 -0.0829 26 1 4.7469 0.1031 1.6708 27 1 3.4779 0.8581 3.5738 28 1 1.6500 2.5281 3.2502 29 1 -2.1091 4.1478 2.6571 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687729168.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:57 Heat of formation + Delta-G solvation = -160.957105 kcal Electronic energy + Delta-G solvation = -19931.321540 eV Core-core repulsion = 16405.534889 eV Total energy + Delta-G solvation = -3525.786651 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.076 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.48799 -46.96394 -46.88368 -38.84846 -35.35416 -33.89584 -30.68516 -30.34457 -26.20212 -25.55169 -24.21219 -21.90429 -20.46099 -18.49098 -17.74130 -17.59727 -16.96387 -16.37778 -15.48671 -14.73141 -14.29613 -14.08300 -13.77749 -13.66443 -13.53174 -13.26731 -13.19569 -12.95571 -12.80092 -12.43919 -12.31694 -11.77952 -11.52030 -11.16636 -11.12801 -10.53563 -10.36934 -9.90242 -9.62124 -9.50496 -9.13735 -8.83043 -7.24376 -7.12343 -4.59775 2.21311 3.06100 3.08571 3.22102 3.44689 3.85413 3.97254 4.20253 4.43395 4.74307 4.86606 5.03785 5.59448 5.69276 6.01116 6.07586 6.13702 6.22804 6.41067 6.47116 6.58722 6.83474 6.87848 7.23789 7.53282 7.63870 7.83631 7.98108 8.19795 8.43274 8.57293 9.79250 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.023195 B = 0.014052 C = 0.011341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.855926 B = 1992.098364 C = 2468.422019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.348 6.348 3 C 0.124 3.876 4 C 0.431 3.569 5 F -0.170 7.170 6 F -0.178 7.178 7 F -0.192 7.192 8 C -0.050 4.050 9 C -0.278 4.278 10 C -0.034 4.034 11 C -0.362 4.362 12 C 0.032 3.968 13 C -0.420 4.420 14 H 0.104 0.896 15 C 0.084 3.916 16 N -0.783 5.783 17 Si 0.923 3.077 18 H -0.265 1.265 19 H -0.296 1.296 20 H -0.241 1.241 21 H 0.071 0.929 22 H 0.055 0.945 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.333 -4.302 -2.344 5.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 O -0.266 6.266 3 C 0.082 3.918 4 C 0.377 3.623 5 F -0.151 7.151 6 F -0.160 7.160 7 F -0.174 7.174 8 C -0.087 4.087 9 C -0.298 4.298 10 C -0.053 4.053 11 C -0.383 4.383 12 C 0.028 3.972 13 C -0.446 4.446 14 H 0.122 0.878 15 C -0.139 4.139 16 N -0.405 5.405 17 Si 0.749 3.251 18 H -0.191 1.191 19 H -0.224 1.224 20 H -0.164 1.164 21 H 0.089 0.911 22 H 0.074 0.926 23 H 0.095 0.905 24 H 0.088 0.912 25 H 0.098 0.902 26 H 0.112 0.888 27 H 0.102 0.898 28 H 0.118 0.882 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.175 -4.269 -2.358 5.340 hybrid contribution -0.523 -0.024 0.419 0.671 sum 1.652 -4.293 -1.939 4.992 Atomic orbital electron populations 1.23351 0.80917 1.02361 1.03006 1.88043 1.20512 1.23883 1.94151 1.21791 0.96623 0.84894 0.88447 1.21660 0.74811 0.77981 0.87860 1.93124 1.29836 1.95653 1.96486 1.93143 1.85150 1.40917 1.96787 1.93112 1.87058 1.77563 1.59665 1.20108 0.89097 1.01577 0.97931 1.22226 1.04357 1.10591 0.92576 1.20042 0.94449 0.94473 0.96297 1.20150 1.04426 1.16266 0.97500 1.19279 0.93789 0.92493 0.91603 1.19583 1.03914 1.18128 1.03005 0.87849 1.26456 0.93768 0.95387 0.98243 1.69503 1.13054 1.25681 1.32236 0.86101 0.75858 0.82797 0.80324 1.19085 1.22377 1.16411 0.91083 0.92618 0.90547 0.91228 0.90172 0.88769 0.89825 0.88244 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 9.75 101.05 0.99 0.97 15 2 O -0.35 -7.61 10.20 -35.23 -0.36 -7.97 15 3 C 0.12 2.74 0.44 -91.82 -0.04 2.70 15 4 C 0.43 9.21 1.96 37.16 0.07 9.28 15 5 F -0.17 -3.73 11.35 2.25 0.03 -3.70 15 6 F -0.18 -3.86 15.60 2.25 0.04 -3.82 15 7 F -0.19 -3.80 16.93 2.25 0.04 -3.76 15 8 C -0.05 -1.02 4.86 -28.04 -0.14 -1.15 15 9 C -0.28 -5.70 10.02 -35.85 -0.36 -6.06 15 10 C -0.03 -0.75 9.88 -40.13 -0.40 -1.15 15 11 C -0.36 -8.71 7.26 -38.53 -0.28 -8.99 15 12 C 0.03 0.77 3.09 -104.34 -0.32 0.45 15 13 C -0.42 -10.67 6.63 -38.52 -0.26 -10.92 15 14 H 0.10 2.77 5.56 -52.49 -0.29 2.48 15 15 C 0.08 2.10 5.32 -17.17 -0.09 2.00 15 16 N -0.78 -19.72 13.91 55.59 0.77 -18.94 15 17 Si 0.92 20.42 23.39 -169.99 -3.98 16.45 15 18 H -0.27 -5.88 6.47 56.52 0.37 -5.51 15 19 H -0.30 -6.25 7.11 56.52 0.40 -5.85 15 20 H -0.24 -5.40 6.60 56.52 0.37 -5.03 15 21 H 0.07 1.56 3.80 -51.93 -0.20 1.36 15 22 H 0.06 1.07 5.77 -51.93 -0.30 0.78 15 23 H 0.08 1.29 8.14 -51.92 -0.42 0.87 15 24 H 0.07 1.28 8.09 -51.93 -0.42 0.86 15 25 H 0.08 1.58 7.50 -51.93 -0.39 1.19 15 26 H 0.09 1.71 8.06 -52.49 -0.42 1.28 15 27 H 0.08 1.64 8.06 -52.48 -0.42 1.22 15 28 H 0.10 2.45 4.80 -52.48 -0.25 2.20 15 29 H 0.29 6.63 8.29 -40.82 -0.34 6.29 15 LS Contribution 238.85 15.07 3.60 3.60 Total: -1.00 -25.87 238.85 -3.00 -28.88 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -2.32 Total: 2.14 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -0.82 Total: -12.86 kcal Atomic # 7 Polarization: -19.72 SS G_CDS: 0.77 Total: -18.94 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -0.36 Total: -7.97 kcal Atomic # 9 Polarization: -11.39 SS G_CDS: 0.10 Total: -11.29 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -3.98 Total: 16.45 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -25.87 -3.00 -28.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687729168.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.082 kcal (2) G-P(sol) polarization free energy of solvation -25.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds