Wall clock time and date at job start Mon Mar 30 2020 06:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00019 * 2 1 4 4 C 1.53001 * 109.43944 * 185.78171 * 3 2 1 5 5 F 1.39903 * 109.46773 * 185.59339 * 4 3 2 6 6 F 1.39893 * 109.47343 * 305.59011 * 4 3 2 7 7 F 1.39892 * 109.47113 * 65.59704 * 4 3 2 8 8 C 1.52849 * 109.44173 * 305.70644 * 3 2 1 9 9 C 1.50542 * 110.07041 * 168.34231 * 8 3 2 10 10 C 1.34067 * 120.84785 * 325.23751 * 9 8 3 11 11 C 1.40676 * 120.63388 * 1.36142 * 10 9 8 12 12 C 1.38612 * 119.95065 * 16.79127 * 11 10 9 13 13 C 1.38537 * 120.12846 * 181.78508 * 12 11 10 14 14 H 1.07992 * 120.00341 * 208.69644 * 13 12 11 15 15 C 1.40746 * 119.99784 * 28.70507 * 13 12 11 16 16 N 1.30497 * 119.99868 * 17.15114 * 15 13 12 17 17 Si 1.86800 * 120.00048 * 197.15394 * 15 13 12 18 18 H 1.48502 * 109.46877 * 59.99854 * 17 15 13 19 19 H 1.48494 * 109.46902 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46992 * 299.99751 * 17 15 13 21 21 H 1.08998 * 109.47240 * 191.02732 * 1 2 3 22 22 H 1.09005 * 109.47284 * 311.02579 * 1 2 3 23 23 H 1.08995 * 109.47062 * 71.02889 * 1 2 3 24 24 H 1.08997 * 109.37104 * 288.53382 * 8 3 2 25 25 H 1.09007 * 109.36615 * 48.16651 * 8 3 2 26 26 H 1.07996 * 119.57291 * 145.24922 * 9 8 3 27 27 H 1.08000 * 119.68371 * 181.39350 * 10 9 8 28 28 H 1.07997 * 120.02348 * 196.81580 * 11 10 9 29 29 H 0.97006 * 119.99956 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5287 1.1868 -0.1453 5 9 4.1096 2.4530 -0.0177 6 9 4.0280 0.3420 0.8517 7 9 3.8367 0.6570 -1.4029 8 6 1.4486 2.1124 -1.1704 9 6 1.8238 3.5630 -1.0249 10 6 1.8999 4.1354 0.1850 11 6 1.6581 3.3845 1.3497 12 6 1.6830 1.9996 1.2978 13 6 1.4090 1.2560 2.4342 14 1 1.8494 0.2779 2.5588 15 6 0.5565 1.7755 3.4264 16 7 -0.2318 2.7780 3.1497 17 14 0.5535 1.0299 5.1391 18 1 1.9094 1.1486 5.7330 19 1 -0.4248 1.7520 5.9915 20 1 0.1739 -0.4033 5.0544 21 1 -0.3633 -1.0087 0.1966 22 1 -0.3634 0.6746 0.7753 23 1 -0.3633 0.3341 -0.9718 24 1 1.8557 1.7255 -2.1046 25 1 0.3626 2.0196 -1.1854 26 1 2.0341 4.1501 -1.9066 27 1 2.1487 5.1832 0.2663 28 1 1.4527 3.8867 2.2835 29 1 -0.8191 3.1362 3.8337 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687729169.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:00 Heat of formation + Delta-G solvation = -166.597525 kcal Electronic energy + Delta-G solvation = -19705.398541 eV Core-core repulsion = 16179.367303 eV Total energy + Delta-G solvation = -3526.031238 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.22363 -46.76196 -46.64764 -38.74903 -35.26136 -33.83017 -29.96256 -29.50068 -26.79138 -25.19580 -24.17042 -21.39476 -20.36833 -17.97624 -17.60177 -17.46871 -17.09507 -15.94154 -15.20798 -14.44420 -14.31491 -13.86468 -13.61439 -13.52287 -13.38889 -13.13965 -12.88534 -12.84967 -12.75330 -12.33838 -11.93396 -11.57562 -11.22522 -11.01054 -10.84906 -10.63220 -10.54285 -9.99171 -9.72500 -9.31095 -8.91913 -8.65496 -7.04025 -6.90303 -4.31590 2.47058 2.97903 2.99919 3.06242 3.48180 3.79334 4.20837 4.31091 4.71456 4.93315 5.20688 5.47011 5.71809 5.88247 6.02439 6.14836 6.27752 6.41365 6.55591 6.58385 6.81639 6.88333 7.11724 7.55946 7.70448 7.90061 8.10819 8.28075 8.54624 8.81362 8.91322 9.95082 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.025373 B = 0.010992 C = 0.010223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.264942 B = 2546.601465 C = 2738.187503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.368 6.368 3 C 0.114 3.886 4 C 0.471 3.529 5 F -0.165 7.165 6 F -0.180 7.180 7 F -0.193 7.193 8 C -0.078 4.078 9 C -0.326 4.326 10 C -0.021 4.021 11 C -0.312 4.312 12 C 0.044 3.956 13 C -0.411 4.411 14 H 0.084 0.916 15 C 0.072 3.928 16 N -0.754 5.754 17 Si 0.908 3.092 18 H -0.260 1.260 19 H -0.277 1.277 20 H -0.262 1.262 21 H 0.076 0.924 22 H 0.072 0.928 23 H 0.033 0.967 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.107 0.893 29 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.566 -2.454 -2.361 3.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.287 6.287 3 C 0.073 3.927 4 C 0.417 3.583 5 F -0.146 7.146 6 F -0.162 7.162 7 F -0.175 7.175 8 C -0.115 4.115 9 C -0.346 4.346 10 C -0.039 4.039 11 C -0.333 4.333 12 C 0.041 3.959 13 C -0.437 4.437 14 H 0.102 0.898 15 C -0.151 4.151 16 N -0.376 5.376 17 Si 0.732 3.268 18 H -0.185 1.185 19 H -0.201 1.201 20 H -0.187 1.187 21 H 0.095 0.905 22 H 0.091 0.909 23 H 0.051 0.949 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.125 0.875 29 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.508 -2.498 -2.263 3.409 hybrid contribution -0.042 -0.006 0.718 0.720 sum 0.466 -2.505 -1.545 2.980 Atomic orbital electron populations 1.22758 0.80165 1.02508 1.00624 1.87758 1.20911 1.24745 1.95249 1.21346 0.86836 0.85322 0.99193 1.20257 0.91591 0.73578 0.72916 1.93196 1.85867 1.40037 1.95536 1.93136 1.89507 1.71781 1.61762 1.93088 1.94595 1.86867 1.42909 1.20555 1.01042 0.94729 0.95143 1.22116 1.20952 0.94979 0.96556 1.20178 0.93481 0.96838 0.93448 1.20290 1.23908 0.92145 0.96968 1.19174 0.93725 0.93253 0.89753 1.19217 1.21102 1.02921 1.00493 0.89767 1.26091 0.93753 0.94413 1.00809 1.69716 1.13980 1.18793 1.35117 0.86340 0.79492 0.80140 0.80823 1.18459 1.20138 1.18655 0.90510 0.90916 0.94856 0.91872 0.90745 0.89508 0.90222 0.87543 0.90337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 9.70 101.05 0.98 1.66 15 2 O -0.37 -8.14 9.59 -35.23 -0.34 -8.48 15 3 C 0.11 2.62 0.44 -91.81 -0.04 2.58 15 4 C 0.47 10.63 2.39 37.16 0.09 10.72 15 5 F -0.17 -3.79 14.28 2.25 0.03 -3.75 15 6 F -0.18 -4.13 17.00 2.25 0.04 -4.09 15 7 F -0.19 -4.06 16.37 2.25 0.04 -4.02 15 8 C -0.08 -1.67 4.79 -28.04 -0.13 -1.80 15 9 C -0.33 -7.23 8.94 -35.85 -0.32 -7.55 15 10 C -0.02 -0.49 8.85 -40.13 -0.36 -0.84 15 11 C -0.31 -7.97 8.25 -38.52 -0.32 -8.29 15 12 C 0.04 1.11 3.46 -104.34 -0.36 0.75 15 13 C -0.41 -10.27 6.99 -38.52 -0.27 -10.54 15 14 H 0.08 2.11 7.84 -52.49 -0.41 1.70 15 15 C 0.07 1.70 5.08 -17.17 -0.09 1.61 15 16 N -0.75 -18.26 11.18 55.59 0.62 -17.64 15 17 Si 0.91 17.84 29.60 -169.99 -5.03 12.80 15 18 H -0.26 -5.18 7.11 56.52 0.40 -4.78 15 19 H -0.28 -5.25 7.11 56.52 0.40 -4.85 15 20 H -0.26 -5.07 7.11 56.52 0.40 -4.66 15 21 H 0.08 1.25 8.14 -51.93 -0.42 0.83 15 22 H 0.07 1.57 6.31 -51.93 -0.33 1.25 15 23 H 0.03 0.57 6.74 -51.93 -0.35 0.22 15 24 H 0.06 1.26 7.31 -51.93 -0.38 0.88 15 25 H 0.07 1.57 6.07 -51.93 -0.32 1.26 15 26 H 0.09 1.76 8.06 -52.49 -0.42 1.34 15 27 H 0.08 1.72 8.06 -52.49 -0.42 1.30 15 28 H 0.11 2.88 6.42 -52.49 -0.34 2.54 15 29 H 0.29 6.29 8.29 -40.82 -0.34 5.95 15 LS Contribution 251.51 15.07 3.79 3.79 Total: -1.00 -25.93 251.51 -4.19 -30.12 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -2.52 Total: 2.98 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -0.82 Total: -11.71 kcal Atomic # 7 Polarization: -18.26 SS G_CDS: 0.62 Total: -17.64 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -0.34 Total: -8.48 kcal Atomic # 9 Polarization: -11.98 SS G_CDS: 0.11 Total: -11.87 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.80 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -25.93 -4.19 -30.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687729169.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.473 kcal (2) G-P(sol) polarization free energy of solvation -25.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds