Wall clock time and date at job start Mon Mar 30 2020 06:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00019 * 2 1 4 4 C 1.53001 * 109.43944 * 185.78171 * 3 2 1 5 5 F 1.39903 * 109.46773 * 185.59339 * 4 3 2 6 6 F 1.39893 * 109.47343 * 305.59011 * 4 3 2 7 7 F 1.39892 * 109.47113 * 65.59704 * 4 3 2 8 8 C 1.52849 * 109.44173 * 305.70644 * 3 2 1 9 9 C 1.50542 * 110.07041 * 168.34231 * 8 3 2 10 10 C 1.34067 * 120.84785 * 325.23751 * 9 8 3 11 11 C 1.40676 * 120.63388 * 1.36142 * 10 9 8 12 12 C 1.38612 * 119.95065 * 16.79127 * 11 10 9 13 13 C 1.38537 * 120.12846 * 181.78508 * 12 11 10 14 14 H 1.07992 * 120.00341 * 208.69644 * 13 12 11 15 15 C 1.40746 * 119.99784 * 28.70507 * 13 12 11 16 16 N 1.30497 * 119.99868 * 17.15114 * 15 13 12 17 17 Si 1.86800 * 120.00048 * 197.15394 * 15 13 12 18 18 H 1.48502 * 109.46877 * 59.99854 * 17 15 13 19 19 H 1.48494 * 109.46902 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46992 * 299.99751 * 17 15 13 21 21 H 1.08998 * 109.47240 * 191.02732 * 1 2 3 22 22 H 1.09005 * 109.47284 * 311.02579 * 1 2 3 23 23 H 1.08995 * 109.47062 * 71.02889 * 1 2 3 24 24 H 1.08997 * 109.37104 * 288.53382 * 8 3 2 25 25 H 1.09007 * 109.36615 * 48.16651 * 8 3 2 26 26 H 1.07996 * 119.57291 * 145.24922 * 9 8 3 27 27 H 1.08000 * 119.68371 * 181.39350 * 10 9 8 28 28 H 1.07997 * 120.02348 * 196.81580 * 11 10 9 29 29 H 0.97006 * 119.99956 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5287 1.1868 -0.1453 5 9 4.1096 2.4530 -0.0177 6 9 4.0280 0.3420 0.8517 7 9 3.8367 0.6570 -1.4029 8 6 1.4486 2.1124 -1.1704 9 6 1.8238 3.5630 -1.0249 10 6 1.8999 4.1354 0.1850 11 6 1.6581 3.3845 1.3497 12 6 1.6830 1.9996 1.2978 13 6 1.4090 1.2560 2.4342 14 1 1.8494 0.2779 2.5588 15 6 0.5565 1.7755 3.4264 16 7 -0.2318 2.7780 3.1497 17 14 0.5535 1.0299 5.1391 18 1 1.9094 1.1486 5.7330 19 1 -0.4248 1.7520 5.9915 20 1 0.1739 -0.4033 5.0544 21 1 -0.3633 -1.0087 0.1966 22 1 -0.3634 0.6746 0.7753 23 1 -0.3633 0.3341 -0.9718 24 1 1.8557 1.7255 -2.1046 25 1 0.3626 2.0196 -1.1854 26 1 2.0341 4.1501 -1.9066 27 1 2.1487 5.1832 0.2663 28 1 1.4527 3.8867 2.2835 29 1 -0.8191 3.1362 3.8337 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687729169.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:59 Heat of formation + Delta-G solvation = -180.462098 kcal Electronic energy + Delta-G solvation = -19705.999754 eV Core-core repulsion = 16179.367303 eV Total energy + Delta-G solvation = -3526.632451 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.99867 -48.51128 -48.45187 -40.48941 -37.01643 -35.62923 -31.76556 -31.28639 -28.49391 -26.90671 -25.95739 -23.20222 -22.15280 -19.75487 -19.37484 -19.25831 -18.89587 -17.69865 -16.94885 -16.15592 -16.01628 -15.55071 -15.36278 -15.28802 -15.11729 -14.91179 -14.67106 -14.62979 -14.43341 -14.09704 -13.67394 -13.27708 -12.87925 -12.70246 -12.58114 -12.33964 -12.13907 -11.70712 -11.51987 -11.08705 -10.69305 -10.43709 -8.86543 -8.70537 -6.20852 0.69142 1.37316 1.45980 1.48738 1.72904 2.15499 2.47728 2.50201 2.93672 3.16380 3.37124 3.73195 3.98646 4.12065 4.46065 4.54018 4.70471 4.72917 4.87079 4.99078 5.06478 5.07919 5.33416 5.78862 5.85258 6.04676 6.28459 6.43381 6.67576 6.93238 7.05511 8.19044 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.025373 B = 0.010992 C = 0.010223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.264942 B = 2546.601465 C = 2738.187503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.377 6.377 3 C 0.113 3.887 4 C 0.469 3.531 5 F -0.169 7.169 6 F -0.185 7.185 7 F -0.182 7.182 8 C -0.081 4.081 9 C -0.311 4.311 10 C -0.042 4.042 11 C -0.334 4.334 12 C 0.034 3.966 13 C -0.435 4.435 14 H 0.076 0.924 15 C 0.039 3.961 16 N -0.779 5.779 17 Si 0.972 3.028 18 H -0.265 1.265 19 H -0.264 1.264 20 H -0.254 1.254 21 H 0.105 0.895 22 H 0.043 0.957 23 H 0.053 0.947 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.258 -3.095 -2.789 4.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.297 6.297 3 C 0.072 3.928 4 C 0.415 3.585 5 F -0.150 7.150 6 F -0.167 7.167 7 F -0.164 7.164 8 C -0.118 4.118 9 C -0.331 4.331 10 C -0.060 4.060 11 C -0.356 4.356 12 C 0.031 3.969 13 C -0.461 4.461 14 H 0.094 0.906 15 C -0.182 4.182 16 N -0.401 5.401 17 Si 0.793 3.207 18 H -0.190 1.190 19 H -0.188 1.188 20 H -0.178 1.178 21 H 0.124 0.876 22 H 0.062 0.938 23 H 0.072 0.928 24 H 0.101 0.899 25 H 0.097 0.903 26 H 0.128 0.872 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.195 -3.133 -2.711 4.147 hybrid contribution 0.030 0.205 0.779 0.807 sum 0.226 -2.928 -1.931 3.515 Atomic orbital electron populations 1.22892 0.78735 1.03699 1.00761 1.87741 1.22406 1.24262 1.95263 1.21321 0.87069 0.85772 0.98685 1.20264 0.91571 0.73437 0.73209 1.93186 1.85941 1.40325 1.95594 1.93123 1.89552 1.71899 1.62098 1.93103 1.94517 1.86680 1.42068 1.20641 1.01432 0.94265 0.95412 1.22448 1.18404 0.95420 0.96791 1.20295 0.94724 0.97574 0.93401 1.20214 1.25740 0.92728 0.96875 1.19392 0.93451 0.93262 0.90825 1.19339 1.22164 1.02910 1.01708 0.90597 1.26823 0.92866 0.94620 1.03894 1.69749 1.14276 1.19581 1.36522 0.85382 0.79315 0.79750 0.76274 1.18965 1.18813 1.17830 0.87641 0.93779 0.92821 0.89872 0.90258 0.87186 0.89008 0.90042 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.27 9.70 113.37 1.10 2.37 15 2 O -0.38 -16.22 9.59 -148.98 -1.43 -17.65 15 3 C 0.11 5.07 0.44 -11.57 -0.01 5.06 15 4 C 0.47 20.69 2.39 71.98 0.17 20.87 15 5 F -0.17 -7.62 14.28 44.97 0.64 -6.97 15 6 F -0.19 -8.39 17.00 44.97 0.76 -7.63 15 7 F -0.18 -7.30 16.37 44.97 0.74 -6.57 15 8 C -0.08 -3.30 4.79 29.75 0.14 -3.16 15 9 C -0.31 -13.18 8.94 24.68 0.22 -12.96 15 10 C -0.04 -1.93 8.85 21.91 0.19 -1.73 15 11 C -0.33 -17.31 8.25 22.95 0.19 -17.12 15 12 C 0.03 1.71 3.46 -19.68 -0.07 1.64 15 13 C -0.43 -21.94 6.99 22.95 0.16 -21.78 15 14 H 0.08 3.85 7.84 -2.91 -0.02 3.83 15 15 C 0.04 1.82 5.08 85.50 0.43 2.26 15 16 N -0.78 -38.07 11.18 21.97 0.25 -37.82 15 17 Si 0.97 36.23 29.60 68.60 2.03 38.26 15 18 H -0.27 -10.03 7.11 99.48 0.71 -9.32 15 19 H -0.26 -9.22 7.11 99.48 0.71 -8.51 15 20 H -0.25 -9.10 7.11 99.48 0.71 -8.39 15 21 H 0.11 3.21 8.14 -2.39 -0.02 3.19 15 22 H 0.04 1.89 6.31 -2.38 -0.02 1.87 15 23 H 0.05 1.73 6.74 -2.39 -0.02 1.72 15 24 H 0.08 3.07 7.31 -2.39 -0.02 3.05 15 25 H 0.08 3.19 6.07 -2.38 -0.01 3.18 15 26 H 0.11 4.12 8.06 -2.91 -0.02 4.10 15 27 H 0.09 3.92 8.06 -2.91 -0.02 3.90 15 28 H 0.08 4.55 6.42 -2.91 -0.02 4.53 15 29 H 0.29 12.95 8.29 -92.70 -0.77 12.18 15 Total: -1.00 -54.32 251.51 6.71 -47.61 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 1.18 Total: 15.32 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 2.54 Total: -24.55 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.25 Total: -37.82 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -1.43 Total: -17.65 kcal Atomic # 9 Polarization: -23.31 SS G_CDS: 2.14 Total: -21.17 kcal Atomic # 14 Polarization: 36.23 SS G_CDS: 2.03 Total: 38.26 kcal Total: -54.32 6.71 -47.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687729169.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.853 kcal (2) G-P(sol) polarization free energy of solvation -54.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds