Wall clock time and date at job start Mon Mar 30 2020 06:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47624 * 2 1 4 4 C 1.52998 * 109.47488 * 239.99860 * 2 1 3 5 5 C 1.50700 * 109.47233 * 64.99643 * 4 2 1 6 6 H 1.08003 * 119.99714 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99874 * 179.97438 * 5 4 2 8 8 N 1.31505 * 120.00278 * 0.02562 * 7 5 4 9 9 Si 1.86810 * 119.99562 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46652 * 90.00630 * 9 7 5 11 11 H 1.48502 * 109.46964 * 210.00411 * 9 7 5 12 12 H 1.48497 * 109.47288 * 330.00346 * 9 7 5 13 13 N 1.46504 * 109.47189 * 119.99772 * 2 1 3 14 14 C 1.34951 * 126.03463 * 35.02674 * 13 2 1 15 15 C 1.35320 * 107.74569 * 180.02562 * 14 13 2 16 16 C 1.39866 * 107.91898 * 359.97438 * 15 14 13 17 17 C 1.50696 * 125.89915 * 179.97438 * 16 15 14 18 18 F 1.39906 * 109.47387 * 185.01800 * 17 16 15 19 19 F 1.39902 * 109.46951 * 305.01484 * 17 16 15 20 20 F 1.39898 * 109.47460 * 65.01250 * 17 16 15 21 21 N 1.30844 * 108.20609 * 0.02562 * 16 15 14 22 22 H 1.08998 * 109.47038 * 299.99991 * 1 2 3 23 23 H 1.09004 * 109.46920 * 60.00505 * 1 2 3 24 24 H 1.09002 * 109.47246 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47339 * 185.00527 * 4 2 1 26 26 H 1.09003 * 109.47028 * 305.00382 * 4 2 1 27 27 H 0.97005 * 120.00088 * 179.97438 * 8 7 5 28 28 H 1.07996 * 126.12664 * 359.95494 * 14 13 2 29 29 H 1.07993 * 126.03961 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4766 6 1 1.0806 0.9745 -2.3757 7 6 1.9934 -0.4019 -3.7282 8 7 2.6766 -1.5188 -3.8510 9 14 1.4997 0.5632 -5.2496 10 1 2.5653 1.5427 -5.5817 11 1 1.3131 -0.3705 -6.3892 12 1 0.2285 1.2845 -4.9874 13 7 2.0183 -0.6906 1.1962 14 6 1.4404 -1.7562 1.7893 15 6 2.1963 -2.0924 2.8602 16 6 3.2732 -1.2022 2.9234 17 6 4.3659 -1.2095 3.9611 18 9 5.2009 -0.1039 3.7668 19 9 3.7971 -1.1457 5.2376 20 9 5.1141 -2.3856 3.8422 21 7 3.1675 -0.3613 1.9265 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 3.1263 -0.7995 -1.2055 26 1 1.6054 -1.7198 -1.2951 27 1 2.9239 -1.8418 -4.7316 28 1 0.5361 -2.2511 1.4676 29 1 2.0022 -2.9046 3.5450 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695821006.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:49 Heat of formation + Delta-G solvation = -102.955022 kcal Electronic energy + Delta-G solvation = -17842.652140 eV Core-core repulsion = 14351.673399 eV Total energy + Delta-G solvation = -3490.978741 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.083 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -51.21599 -48.73135 -48.72174 -42.44976 -37.25613 -34.64389 -32.08314 -31.18152 -29.10872 -27.48820 -25.66749 -23.45304 -22.12726 -21.09517 -19.60438 -19.24039 -18.88306 -18.71622 -17.28142 -16.74097 -15.99438 -15.58507 -15.54002 -15.30347 -15.14742 -14.87386 -14.86610 -14.68369 -14.58092 -14.22335 -13.77152 -13.46869 -13.07394 -12.88303 -12.71615 -12.39493 -12.15752 -11.89664 -11.81107 -11.39894 -10.67149 -10.61847 -9.75934 -8.25375 -6.37621 0.59684 1.00165 1.38774 1.42457 1.43436 1.53876 1.80004 2.39151 2.64704 2.93132 3.10206 3.32943 3.68194 3.93301 4.14358 4.31664 4.40837 4.54039 4.73689 4.85665 4.95926 5.19479 5.27011 5.33783 5.43905 5.68047 5.92904 6.12727 6.39373 6.76793 7.32698 8.86933 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.038854 B = 0.005026 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.469542 B = 5569.263073 C = 5823.760678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.157 3.843 3 H 0.087 0.913 4 C 0.029 3.971 5 C -0.533 4.533 6 H 0.077 0.923 7 C 0.003 3.997 8 N -0.933 5.933 9 Si 0.967 3.033 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.253 1.253 13 N -0.339 5.339 14 C 0.068 3.932 15 C -0.241 4.241 16 C -0.047 4.047 17 C 0.565 3.435 18 F -0.177 7.177 19 F -0.161 7.161 20 F -0.168 7.168 21 N -0.289 5.289 22 H 0.074 0.926 23 H 0.088 0.912 24 H 0.073 0.927 25 H -0.021 1.021 26 H 0.008 0.992 27 H 0.264 0.736 28 H 0.216 0.784 29 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.066 -0.574 13.741 14.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.057 3.943 3 H 0.105 0.895 4 C -0.009 4.009 5 C -0.572 4.572 6 H 0.095 0.905 7 C -0.195 4.195 8 N -0.572 5.572 9 Si 0.791 3.209 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.177 1.177 13 N -0.122 5.122 14 C -0.078 4.078 15 C -0.270 4.270 16 C -0.211 4.211 17 C 0.508 3.492 18 F -0.159 7.159 19 F -0.142 7.142 20 F -0.149 7.149 21 N -0.114 5.114 22 H 0.093 0.907 23 H 0.107 0.893 24 H 0.092 0.908 25 H -0.003 1.003 26 H 0.026 0.974 27 H 0.073 0.927 28 H 0.233 0.767 29 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -3.506 0.398 12.946 13.418 hybrid contribution 0.228 -0.460 -0.535 0.741 sum -3.278 -0.062 12.411 12.837 Atomic orbital electron populations 1.22020 0.89863 1.04017 1.03755 1.21773 0.96796 0.96111 0.79600 0.89501 1.19300 0.94390 0.95691 0.91516 1.21445 1.35758 1.09122 0.90846 0.90475 1.25958 0.94785 0.95910 1.02858 1.70108 1.39540 1.22899 1.24691 0.85411 0.79243 0.78154 0.78049 1.20465 1.21114 1.17700 1.49471 1.16895 1.24015 1.21792 1.23269 1.00985 0.90033 0.93541 1.21509 0.96106 1.05522 1.03896 1.22254 0.99639 1.00946 0.98299 1.16746 0.79433 0.73695 0.79305 1.93206 1.73478 1.54090 1.95076 1.93223 1.84688 1.96022 1.40283 1.93225 1.77640 1.48113 1.95942 1.77274 1.04547 1.23415 1.06174 0.90706 0.89292 0.90775 1.00311 0.97378 0.92718 0.76729 0.79480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 8.64 71.98 0.62 -3.39 15 2 C 0.16 5.98 3.35 44.99 0.15 6.13 15 3 H 0.09 3.44 8.14 -2.39 -0.02 3.42 15 4 C 0.03 1.44 4.77 29.85 0.14 1.58 15 5 C -0.53 -27.60 8.41 25.60 0.22 -27.39 15 6 H 0.08 3.67 7.06 -2.91 -0.02 3.65 15 7 C 0.00 0.19 5.46 84.66 0.46 0.65 15 8 N -0.93 -54.82 13.29 21.45 0.28 -54.53 15 9 Si 0.97 41.74 29.54 68.60 2.03 43.76 15 10 H -0.28 -11.96 7.11 99.48 0.71 -11.25 15 11 H -0.29 -12.24 7.11 99.48 0.71 -11.53 15 12 H -0.25 -10.09 7.11 99.48 0.71 -9.38 15 13 N -0.34 -12.33 3.53 -327.49 -1.15 -13.49 15 14 C 0.07 1.95 10.59 83.54 0.88 2.84 15 15 C -0.24 -6.59 10.73 21.99 0.24 -6.35 15 16 C -0.05 -1.54 6.51 43.10 0.28 -1.26 15 17 C 0.56 16.53 3.51 71.23 0.25 16.78 15 18 F -0.18 -5.65 17.14 44.97 0.77 -4.88 15 19 F -0.16 -4.14 17.30 44.97 0.78 -3.36 15 20 F -0.17 -4.78 17.30 44.97 0.78 -4.00 15 21 N -0.29 -11.35 12.35 -47.39 -0.59 -11.93 15 22 H 0.07 1.78 8.14 -2.39 -0.02 1.76 15 23 H 0.09 2.69 6.95 -2.38 -0.02 2.67 15 24 H 0.07 1.93 7.16 -2.39 -0.02 1.91 15 25 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 15 26 H 0.01 0.41 8.14 -2.39 -0.02 0.39 15 27 H 0.26 14.68 8.31 -92.70 -0.77 13.91 15 28 H 0.22 4.38 7.26 -2.91 -0.02 4.36 15 29 H 0.19 3.67 8.06 -2.91 -0.02 3.64 15 Total: -1.00 -63.88 271.09 7.32 -56.56 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: 1.17 Total: 2.28 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: 3.24 Total: -10.42 kcal Atomic # 7 Polarization: -78.50 SS G_CDS: -1.46 Total: -79.95 kcal Atomic # 9 Polarization: -14.56 SS G_CDS: 2.33 Total: -12.24 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.76 kcal Total: -63.88 7.32 -56.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695821006.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.395 kcal (2) G-P(sol) polarization free energy of solvation -63.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds