Wall clock time and date at job start Mon Mar 30 2020 06:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47015 * 2 1 4 4 C 1.53007 * 109.46975 * 119.99433 * 2 1 3 5 5 C 1.50701 * 109.46985 * 295.00493 * 4 2 1 6 6 H 1.07996 * 120.00490 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99482 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00222 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99681 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47173 * 59.99776 * 9 7 5 11 11 H 1.48496 * 109.47327 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47212 * 299.99988 * 9 7 5 13 13 N 1.46494 * 109.47640 * 239.99694 * 2 1 3 14 14 C 1.34954 * 126.03475 * 325.00071 * 13 2 1 15 15 C 1.35316 * 107.74368 * 179.73518 * 14 13 2 16 16 C 1.39868 * 107.92272 * 0.02562 * 15 14 13 17 17 C 1.50700 * 125.89796 * 179.97438 * 16 15 14 18 18 F 1.39900 * 109.46949 * 89.99872 * 17 16 15 19 19 F 1.39895 * 109.47054 * 209.99373 * 17 16 15 20 20 F 1.39893 * 109.47014 * 329.99504 * 17 16 15 21 21 N 1.30837 * 108.20148 * 359.97438 * 16 15 14 22 22 H 1.08998 * 109.47015 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47487 * 300.00505 * 1 2 3 24 24 H 1.09001 * 109.47025 * 60.00664 * 1 2 3 25 25 H 1.09005 * 109.46902 * 55.00239 * 4 2 1 26 26 H 1.08990 * 109.47268 * 175.00442 * 4 2 1 27 27 H 0.97006 * 119.99455 * 179.97438 * 8 7 5 28 28 H 1.07999 * 126.12395 * 359.71501 * 14 13 2 29 29 H 1.07999 * 126.03437 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6411 0.0572 2.4766 6 1 1.0805 0.9747 2.3757 7 6 1.9922 -0.4020 3.7284 8 7 2.6745 -1.5195 3.8514 9 14 1.4984 0.5631 5.2497 10 1 0.0185 0.6708 5.3089 11 1 1.9922 -0.1374 6.4623 12 1 2.0915 1.9231 5.1872 13 7 2.0184 -0.6906 -1.1960 14 6 1.4403 -1.7560 -1.7893 15 6 2.1934 -2.0891 -2.8631 16 6 3.2689 -1.1972 -2.9279 17 6 4.3591 -1.2016 -3.9683 18 9 3.9793 -0.3933 -5.0451 19 9 5.5410 -0.7061 -3.4074 20 9 4.5689 -2.5095 -4.4182 21 7 3.1648 -0.3583 -1.9292 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 1.6053 -1.7198 1.2953 26 1 3.1262 -0.7993 1.2058 27 1 2.9217 -1.8424 4.7322 28 1 0.5384 -2.2537 -1.4650 29 1 1.9989 -2.9008 -3.5484 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695821010.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:52 Heat of formation + Delta-G solvation = -86.484916 kcal Electronic energy + Delta-G solvation = -17841.790653 eV Core-core repulsion = 14351.526109 eV Total energy + Delta-G solvation = -3490.264544 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.01323 -47.56021 -47.49267 -41.13957 -35.67414 -32.74165 -30.63081 -29.87754 -27.36743 -26.21307 -23.93360 -21.94203 -20.84440 -19.68066 -18.40207 -18.03227 -17.59286 -16.89372 -15.72192 -15.02533 -14.50258 -14.38038 -14.24455 -13.95212 -13.88278 -13.66488 -13.66169 -13.38583 -13.16504 -12.52111 -12.22570 -12.06570 -11.68112 -11.13548 -11.02063 -10.82812 -10.69499 -10.27250 -10.12394 -9.44923 -9.23019 -8.55884 -8.42958 -6.19790 -4.25645 1.93011 2.29816 2.58426 3.06222 3.22191 3.28131 3.29480 3.88758 4.14794 4.30720 4.53639 4.96554 5.14254 5.18261 5.55569 5.61988 5.72455 5.79262 5.95111 6.20292 6.42187 6.48275 6.51959 7.15579 7.33168 7.44348 7.71602 7.76576 8.08778 8.78400 9.39665 10.91275 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.038928 B = 0.005022 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.113193 B = 5574.344603 C = 5826.817757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.146 3.854 3 H 0.098 0.902 4 C 0.019 3.981 5 C -0.527 4.527 6 H 0.061 0.939 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.898 3.102 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.321 5.321 14 C 0.067 3.933 15 C -0.247 4.247 16 C -0.040 4.040 17 C 0.558 3.442 18 F -0.174 7.174 19 F -0.170 7.170 20 F -0.170 7.170 21 N -0.240 5.240 22 H 0.060 0.940 23 H 0.094 0.906 24 H 0.047 0.953 25 H 0.025 0.975 26 H 0.027 0.973 27 H 0.265 0.735 28 H 0.181 0.819 29 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.333 -0.755 -13.048 13.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.047 3.953 3 H 0.116 0.884 4 C -0.019 4.019 5 C -0.566 4.566 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.526 5.526 9 Si 0.725 3.275 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.104 5.104 14 C -0.081 4.081 15 C -0.277 4.277 16 C -0.205 4.205 17 C 0.502 3.498 18 F -0.156 7.156 19 F -0.151 7.151 20 F -0.151 7.151 21 N -0.066 5.066 22 H 0.079 0.921 23 H 0.112 0.888 24 H 0.066 0.934 25 H 0.043 0.957 26 H 0.045 0.955 27 H 0.074 0.926 28 H 0.198 0.802 29 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.756 0.204 -12.222 12.349 hybrid contribution -0.372 -0.341 0.408 0.649 sum -2.128 -0.137 -11.814 12.005 Atomic orbital electron populations 1.22092 0.93119 1.02756 1.02718 1.22113 0.94525 0.97541 0.81088 0.88438 1.19517 0.97523 0.95952 0.88863 1.20943 1.36618 1.08798 0.90230 0.92042 1.25001 0.94753 0.95012 0.99289 1.69956 1.37699 1.20841 1.24121 0.86559 0.78923 0.80074 0.81910 1.20047 1.21147 1.20032 1.49583 1.16587 1.22638 1.21545 1.22572 1.00142 0.91333 0.94030 1.21063 0.97451 1.05475 1.03698 1.21844 0.98927 1.01104 0.98579 1.16908 0.79948 0.73592 0.79342 1.93211 1.91227 1.73589 1.57527 1.93227 1.49306 1.87593 1.84962 1.93192 1.95175 1.36877 1.89882 1.77310 1.03374 1.21371 1.04501 0.92136 0.88750 0.93437 0.95679 0.95494 0.92557 0.80151 0.82876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.65 37.16 0.32 -2.00 15 2 C 0.15 2.81 3.35 -67.93 -0.23 2.58 15 3 H 0.10 1.91 8.14 -51.93 -0.42 1.49 15 4 C 0.02 0.47 4.77 -27.88 -0.13 0.34 15 5 C -0.53 -13.60 8.41 -34.44 -0.29 -13.89 15 6 H 0.06 1.49 7.06 -52.49 -0.37 1.12 15 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 8 N -0.89 -25.51 13.29 55.43 0.74 -24.78 15 9 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 15 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 15 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 15 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 13 N -0.32 -5.94 3.53 -54.86 -0.19 -6.14 15 14 C 0.07 1.03 10.59 -17.22 -0.18 0.85 15 15 C -0.25 -3.68 10.42 -40.01 -0.42 -4.10 15 16 C -0.04 -0.68 6.56 -82.41 -0.54 -1.22 15 17 C 0.56 8.48 3.55 36.01 0.13 8.61 15 18 F -0.17 -2.52 17.30 2.25 0.04 -2.48 15 19 F -0.17 -2.76 17.25 2.25 0.04 -2.72 15 20 F -0.17 -2.36 17.04 2.25 0.04 -2.32 15 21 N -0.24 -4.71 12.51 33.67 0.42 -4.29 15 22 H 0.06 0.88 7.16 -51.93 -0.37 0.50 15 23 H 0.09 1.53 6.95 -51.93 -0.36 1.17 15 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 15 25 H 0.02 0.63 8.14 -51.93 -0.42 0.21 15 26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 15 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 28 H 0.18 2.17 7.26 -52.49 -0.38 1.79 15 29 H 0.15 1.81 8.06 -52.49 -0.42 1.38 15 LS Contribution 270.88 15.07 4.08 4.08 Total: -1.00 -28.98 270.88 -4.03 -33.01 By element: Atomic # 1 Polarization: 0.21 SS G_CDS: -2.73 Total: -2.53 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -1.44 Total: -7.25 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.96 Total: -35.21 kcal Atomic # 9 Polarization: -7.64 SS G_CDS: 0.12 Total: -7.53 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.98 -4.03 -33.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695821010.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.472 kcal (2) G-P(sol) polarization free energy of solvation -28.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds