Wall clock time and date at job start Mon Mar 30 2020 06:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47015 * 2 1 4 4 C 1.53007 * 109.46975 * 119.99433 * 2 1 3 5 5 C 1.50701 * 109.46985 * 295.00493 * 4 2 1 6 6 H 1.07996 * 120.00490 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99482 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00222 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99681 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47173 * 59.99776 * 9 7 5 11 11 H 1.48496 * 109.47327 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47212 * 299.99988 * 9 7 5 13 13 N 1.46494 * 109.47640 * 239.99694 * 2 1 3 14 14 C 1.34954 * 126.03475 * 325.00071 * 13 2 1 15 15 C 1.35316 * 107.74368 * 179.73518 * 14 13 2 16 16 C 1.39868 * 107.92272 * 0.02562 * 15 14 13 17 17 C 1.50700 * 125.89796 * 179.97438 * 16 15 14 18 18 F 1.39900 * 109.46949 * 89.99872 * 17 16 15 19 19 F 1.39895 * 109.47054 * 209.99373 * 17 16 15 20 20 F 1.39893 * 109.47014 * 329.99504 * 17 16 15 21 21 N 1.30837 * 108.20148 * 359.97438 * 16 15 14 22 22 H 1.08998 * 109.47015 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47487 * 300.00505 * 1 2 3 24 24 H 1.09001 * 109.47025 * 60.00664 * 1 2 3 25 25 H 1.09005 * 109.46902 * 55.00239 * 4 2 1 26 26 H 1.08990 * 109.47268 * 175.00442 * 4 2 1 27 27 H 0.97006 * 119.99455 * 179.97438 * 8 7 5 28 28 H 1.07999 * 126.12395 * 359.71501 * 14 13 2 29 29 H 1.07999 * 126.03437 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6411 0.0572 2.4766 6 1 1.0805 0.9747 2.3757 7 6 1.9922 -0.4020 3.7284 8 7 2.6745 -1.5195 3.8514 9 14 1.4984 0.5631 5.2497 10 1 0.0185 0.6708 5.3089 11 1 1.9922 -0.1374 6.4623 12 1 2.0915 1.9231 5.1872 13 7 2.0184 -0.6906 -1.1960 14 6 1.4403 -1.7560 -1.7893 15 6 2.1934 -2.0891 -2.8631 16 6 3.2689 -1.1972 -2.9279 17 6 4.3591 -1.2016 -3.9683 18 9 3.9793 -0.3933 -5.0451 19 9 5.5410 -0.7061 -3.4074 20 9 4.5689 -2.5095 -4.4182 21 7 3.1648 -0.3583 -1.9292 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 1.6053 -1.7198 1.2953 26 1 3.1262 -0.7993 1.2058 27 1 2.9217 -1.8424 4.7322 28 1 0.5384 -2.2537 -1.4650 29 1 1.9989 -2.9008 -3.5484 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695821010.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:52 Heat of formation + Delta-G solvation = -103.489585 kcal Electronic energy + Delta-G solvation = -17842.528031 eV Core-core repulsion = 14351.526109 eV Total energy + Delta-G solvation = -3491.001922 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.083 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -51.22262 -48.74059 -48.72642 -42.45120 -37.25605 -34.64226 -32.08348 -31.18064 -29.10784 -27.49186 -25.66758 -23.45858 -22.11844 -21.09736 -19.60817 -19.25100 -18.89326 -18.71559 -17.27283 -16.74275 -15.99408 -15.58791 -15.54337 -15.32562 -15.15121 -14.88250 -14.87322 -14.69272 -14.54209 -14.22293 -13.76212 -13.47792 -13.07042 -12.89115 -12.70041 -12.41188 -12.15107 -11.89940 -11.81117 -11.41939 -10.66944 -10.60714 -9.76152 -8.25127 -6.37473 0.59728 0.99980 1.38737 1.42808 1.44865 1.52472 1.79787 2.39362 2.64332 2.92941 3.10286 3.32352 3.68401 3.93349 4.14287 4.31755 4.40877 4.54223 4.73779 4.85704 4.95808 5.19600 5.27013 5.33861 5.43910 5.68003 5.92936 6.12735 6.39227 6.76692 7.32788 8.86950 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.038928 B = 0.005022 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.113193 B = 5574.344603 C = 5826.817757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.157 3.843 3 H 0.087 0.913 4 C 0.029 3.971 5 C -0.535 4.535 6 H 0.077 0.923 7 C 0.004 3.996 8 N -0.933 5.933 9 Si 0.967 3.033 10 H -0.258 1.258 11 H -0.289 1.289 12 H -0.270 1.270 13 N -0.339 5.339 14 C 0.068 3.932 15 C -0.241 4.241 16 C -0.046 4.046 17 C 0.565 3.435 18 F -0.168 7.168 19 F -0.179 7.179 20 F -0.159 7.159 21 N -0.290 5.290 22 H 0.073 0.927 23 H 0.089 0.911 24 H 0.074 0.926 25 H 0.008 0.992 26 H -0.021 1.021 27 H 0.264 0.736 28 H 0.216 0.784 29 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.057 -0.624 -13.721 14.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.057 3.943 3 H 0.105 0.895 4 C -0.009 4.009 5 C -0.573 4.573 6 H 0.095 0.905 7 C -0.195 4.195 8 N -0.572 5.572 9 Si 0.791 3.209 10 H -0.183 1.183 11 H -0.215 1.215 12 H -0.195 1.195 13 N -0.122 5.122 14 C -0.078 4.078 15 C -0.270 4.270 16 C -0.211 4.211 17 C 0.509 3.491 18 F -0.150 7.150 19 F -0.160 7.160 20 F -0.141 7.141 21 N -0.115 5.115 22 H 0.092 0.908 23 H 0.107 0.893 24 H 0.093 0.907 25 H 0.026 0.974 26 H -0.003 1.003 27 H 0.073 0.927 28 H 0.233 0.767 29 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -3.490 0.344 -12.921 13.389 hybrid contribution 0.211 -0.439 0.524 0.715 sum -3.280 -0.095 -12.398 12.825 Atomic orbital electron populations 1.22020 0.89861 1.04016 1.03759 1.21773 0.96795 0.96106 0.79619 0.89519 1.19296 0.94395 0.95681 0.91493 1.21415 1.35872 1.09150 0.90861 0.90494 1.25959 0.94757 0.95913 1.02847 1.70107 1.39493 1.22879 1.24738 0.85464 0.79367 0.78441 0.77590 1.18261 1.21486 1.19460 1.49469 1.16996 1.23966 1.21719 1.23274 1.00958 0.90077 0.93532 1.21527 0.96128 1.05505 1.03873 1.22263 0.99714 1.00988 0.98151 1.16734 0.79263 0.73990 0.79139 1.93221 1.91130 1.73523 1.57098 1.93209 1.49797 1.87794 1.85207 1.93213 1.95066 1.36098 1.89683 1.77249 1.04655 1.23494 1.06091 0.90781 0.89270 0.90721 0.97381 1.00304 0.92713 0.76725 0.79425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 8.65 71.98 0.62 -3.39 15 2 C 0.16 5.98 3.35 44.99 0.15 6.13 15 3 H 0.09 3.44 8.14 -2.39 -0.02 3.42 15 4 C 0.03 1.45 4.77 29.85 0.14 1.60 15 5 C -0.53 -27.69 8.41 25.60 0.22 -27.47 15 6 H 0.08 3.66 7.06 -2.91 -0.02 3.64 15 7 C 0.00 0.21 5.46 84.66 0.46 0.67 15 8 N -0.93 -54.82 13.29 21.45 0.28 -54.54 15 9 Si 0.97 41.72 29.54 68.60 2.03 43.74 15 10 H -0.26 -10.38 7.11 99.48 0.71 -9.67 15 11 H -0.29 -12.52 7.11 99.48 0.71 -11.81 15 12 H -0.27 -11.31 7.11 99.48 0.71 -10.60 15 13 N -0.34 -12.34 3.53 -327.49 -1.15 -13.49 15 14 C 0.07 1.95 10.59 83.54 0.88 2.83 15 15 C -0.24 -6.59 10.42 21.99 0.23 -6.36 15 16 C -0.05 -1.53 6.56 43.10 0.28 -1.25 15 17 C 0.57 16.54 3.55 71.24 0.25 16.80 15 18 F -0.17 -4.65 17.30 44.97 0.78 -3.87 15 19 F -0.18 -5.79 17.25 44.97 0.78 -5.01 15 20 F -0.16 -4.14 17.04 44.97 0.77 -3.38 15 21 N -0.29 -11.39 12.51 -47.39 -0.59 -11.98 15 22 H 0.07 1.93 7.16 -2.39 -0.02 1.91 15 23 H 0.09 2.69 6.95 -2.39 -0.02 2.68 15 24 H 0.07 1.78 8.14 -2.39 -0.02 1.76 15 25 H 0.01 0.41 8.14 -2.38 -0.02 0.39 15 26 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 15 27 H 0.26 14.72 8.31 -92.70 -0.77 13.95 15 28 H 0.22 4.39 7.26 -2.91 -0.02 4.37 15 29 H 0.19 3.69 8.06 -2.91 -0.02 3.66 15 Total: -1.00 -63.84 270.88 7.30 -56.54 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: 1.17 Total: 2.42 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: 3.24 Total: -10.44 kcal Atomic # 7 Polarization: -78.54 SS G_CDS: -1.46 Total: -80.01 kcal Atomic # 9 Polarization: -14.58 SS G_CDS: 2.32 Total: -12.26 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Total: -63.84 7.30 -56.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695821010.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.947 kcal (2) G-P(sol) polarization free energy of solvation -63.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds