Wall clock time and date at job start Mon Mar 30 2020 06:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46777 * 2 1 4 4 C 1.53000 * 109.47025 * 240.00633 * 2 1 3 5 5 C 1.50706 * 109.47228 * 64.99578 * 4 2 1 6 6 H 1.07992 * 119.99974 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99838 * 180.02562 * 5 4 2 8 8 N 1.31508 * 120.00060 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00154 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47404 * 89.99912 * 9 7 5 11 11 H 1.48502 * 109.47239 * 210.00264 * 9 7 5 12 12 H 1.48506 * 109.47219 * 329.99940 * 9 7 5 13 13 N 1.46495 * 109.47513 * 120.00453 * 2 1 3 14 14 C 1.34955 * 126.03398 * 35.25783 * 13 2 1 15 15 C 1.35315 * 107.74104 * 180.15223 * 14 13 2 16 16 C 1.50706 * 126.03422 * 179.87543 * 15 14 13 17 17 F 1.39900 * 109.46715 * 179.70985 * 16 15 14 18 18 F 1.39897 * 109.47068 * 299.70895 * 16 15 14 19 19 F 1.39895 * 109.47042 * 59.71205 * 16 15 14 20 20 C 1.39867 * 107.92409 * 359.60636 * 15 14 13 21 21 N 1.30836 * 108.20249 * 0.24808 * 20 15 14 22 22 H 1.09003 * 109.47237 * 59.99583 * 1 2 3 23 23 H 1.08994 * 109.47563 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.47418 * 299.99885 * 1 2 3 25 25 H 1.08999 * 109.47134 * 185.00133 * 4 2 1 26 26 H 1.09003 * 109.46931 * 304.99837 * 4 2 1 27 27 H 0.97004 * 120.00323 * 179.97438 * 8 7 5 28 28 H 1.08001 * 126.12899 * 359.97438 * 14 13 2 29 29 H 1.08001 * 125.89898 * 180.22242 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.6412 0.0573 -2.4766 6 1 1.0805 0.9747 -2.3756 7 6 1.9922 -0.4019 -3.7284 8 7 1.6446 0.2775 -4.7994 9 14 2.9614 -1.9892 -3.9031 10 1 2.0214 -3.1329 -4.0198 11 1 3.8099 -1.9198 -5.1199 12 1 3.8235 -2.1769 -2.7086 13 7 2.0184 -0.6907 1.1960 14 6 1.4429 -1.7591 1.7865 15 6 2.1963 -2.0926 2.8598 16 6 1.9258 -3.2264 3.8151 17 9 2.9262 -3.2613 4.7925 18 9 0.6825 -3.0340 4.4270 19 9 1.9177 -4.4361 3.1126 20 6 3.2739 -1.2030 2.9225 21 7 3.1682 -0.3622 1.9257 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 3.1262 -0.7994 -1.2057 26 1 1.6053 -1.7197 -1.2953 27 1 1.8919 -0.0453 -5.6801 28 1 0.5409 -2.2568 1.4622 29 1 4.0575 -1.2089 3.6656 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709981548.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:55 Heat of formation + Delta-G solvation = -86.091542 kcal Electronic energy + Delta-G solvation = -17975.120588 eV Core-core repulsion = 14484.873102 eV Total energy + Delta-G solvation = -3490.247486 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.083 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.97480 -47.51815 -47.46046 -41.26759 -35.79201 -32.66496 -31.02086 -30.22886 -27.77015 -25.78130 -23.75860 -21.87721 -20.92941 -19.74747 -18.33794 -18.18544 -17.99138 -16.99874 -15.60244 -15.11454 -14.62821 -14.39927 -14.27414 -14.05776 -13.93077 -13.69988 -13.65970 -13.64773 -12.96921 -12.86297 -12.33245 -12.22350 -11.84037 -11.39447 -11.09251 -10.77728 -10.55691 -10.34471 -10.02115 -9.49438 -9.36024 -8.75479 -8.72791 -6.24446 -4.26300 1.84988 2.49139 2.51055 3.00218 3.18691 3.27811 3.31664 4.00272 4.15398 4.28370 4.60919 4.80046 4.90505 5.07674 5.21041 5.45062 5.60331 5.68780 5.72453 6.12962 6.22200 6.42490 6.51481 6.78736 6.94428 7.11528 7.50884 7.70361 8.25023 8.75164 9.35552 10.87542 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.032798 B = 0.005789 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.499009 B = 4835.205229 C = 5097.708435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.157 3.843 3 H 0.105 0.895 4 C -0.018 4.018 5 C -0.526 4.526 6 H 0.079 0.921 7 C 0.076 3.924 8 N -0.893 5.893 9 Si 0.876 3.124 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.266 1.266 13 N -0.334 5.334 14 C 0.126 3.874 15 C -0.359 4.359 16 C 0.548 3.452 17 F -0.181 7.181 18 F -0.184 7.184 19 F -0.183 7.183 20 C 0.081 3.919 21 N -0.284 5.284 22 H 0.099 0.901 23 H 0.058 0.942 24 H 0.050 0.950 25 H 0.027 0.973 26 H 0.019 0.981 27 H 0.267 0.733 28 H 0.182 0.818 29 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.959 -5.703 15.386 16.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.058 3.942 3 H 0.123 0.877 4 C -0.056 4.056 5 C -0.564 4.564 6 H 0.097 0.903 7 C -0.127 4.127 8 N -0.531 5.531 9 Si 0.703 3.297 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.191 1.191 13 N -0.111 5.111 14 C -0.027 4.027 15 C -0.373 4.373 16 C 0.493 3.507 17 F -0.162 7.162 18 F -0.165 7.165 19 F -0.164 7.164 20 C -0.106 4.106 21 N -0.103 5.103 22 H 0.118 0.882 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.046 0.954 26 H 0.038 0.962 27 H 0.077 0.923 28 H 0.199 0.801 29 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -0.474 -4.574 14.443 15.157 hybrid contribution 0.136 -1.797 0.279 1.823 sum -0.339 -6.370 14.722 16.045 Atomic orbital electron populations 1.22138 0.92792 1.02818 1.03341 1.21848 0.94798 0.97453 0.80079 0.87655 1.20011 0.97364 0.96260 0.91990 1.20827 1.37112 1.10048 0.88439 0.90253 1.24920 0.95125 0.96968 0.95730 1.69874 1.46002 1.39015 0.98205 0.86834 0.80763 0.84015 0.78084 1.20028 1.21007 1.19090 1.49633 1.17522 1.21913 1.22054 1.22191 0.98431 0.89982 0.92085 1.19985 1.05803 1.06624 1.04919 1.17307 0.73534 0.81127 0.78779 1.93137 1.61583 1.96720 1.64786 1.93184 1.43712 1.95185 1.84434 1.93196 1.96201 1.48204 1.78795 1.23608 0.97499 0.92305 0.97214 1.77515 1.03032 1.23309 1.06479 0.88189 0.92260 0.93123 0.95447 0.96246 0.92333 0.80130 0.79401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 8.65 37.16 0.32 -2.03 15 2 C 0.16 2.86 3.35 -67.93 -0.23 2.63 15 3 H 0.11 1.98 8.14 -51.93 -0.42 1.55 15 4 C -0.02 -0.40 3.84 -27.88 -0.11 -0.50 15 5 C -0.53 -13.63 8.96 -34.44 -0.31 -13.94 15 6 H 0.08 2.15 7.30 -52.49 -0.38 1.77 15 7 C 0.08 2.07 5.47 -17.82 -0.10 1.97 15 8 N -0.89 -25.99 13.96 55.43 0.77 -25.21 15 9 Si 0.88 20.86 27.47 -169.99 -4.67 16.19 15 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 12 H -0.27 -6.28 6.54 56.52 0.37 -5.91 15 13 N -0.33 -5.74 3.52 -54.87 -0.19 -5.93 15 14 C 0.13 1.88 10.51 -17.22 -0.18 1.69 15 15 C -0.36 -5.13 5.52 -105.05 -0.58 -5.71 15 16 C 0.55 7.13 3.49 36.01 0.13 7.25 15 17 F -0.18 -2.26 16.82 2.25 0.04 -2.22 15 18 F -0.18 -2.37 17.30 2.25 0.04 -2.33 15 19 F -0.18 -2.48 17.30 2.25 0.04 -2.44 15 20 C 0.08 1.17 11.45 -17.37 -0.20 0.97 15 21 N -0.28 -4.95 12.58 30.62 0.39 -4.57 15 22 H 0.10 1.67 6.95 -51.93 -0.36 1.31 15 23 H 0.06 0.83 7.16 -51.93 -0.37 0.46 15 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 15 25 H 0.03 0.65 7.20 -51.93 -0.37 0.28 15 26 H 0.02 0.42 7.57 -51.93 -0.39 0.03 15 27 H 0.27 7.30 8.31 -40.82 -0.34 6.96 15 28 H 0.18 2.19 7.27 -52.49 -0.38 1.81 15 29 H 0.19 2.09 8.00 -52.49 -0.42 1.67 15 LS Contribution 266.97 15.07 4.02 4.02 Total: -1.00 -28.81 266.97 -3.51 -32.32 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: -2.70 Total: -2.18 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -1.25 Total: -7.66 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.97 Total: -35.71 kcal Atomic # 9 Polarization: -7.11 SS G_CDS: 0.12 Total: -6.99 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.81 -3.51 -32.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709981548.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.769 kcal (2) G-P(sol) polarization free energy of solvation -28.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds