Wall clock time and date at job start Mon Mar 30 2020 06:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46777 * 2 1 4 4 C 1.53000 * 109.47025 * 240.00633 * 2 1 3 5 5 C 1.50706 * 109.47228 * 64.99578 * 4 2 1 6 6 H 1.07992 * 119.99974 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99838 * 180.02562 * 5 4 2 8 8 N 1.31508 * 120.00060 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00154 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47404 * 89.99912 * 9 7 5 11 11 H 1.48502 * 109.47239 * 210.00264 * 9 7 5 12 12 H 1.48506 * 109.47219 * 329.99940 * 9 7 5 13 13 N 1.46495 * 109.47513 * 120.00453 * 2 1 3 14 14 C 1.34955 * 126.03398 * 35.25783 * 13 2 1 15 15 C 1.35315 * 107.74104 * 180.15223 * 14 13 2 16 16 C 1.50706 * 126.03422 * 179.87543 * 15 14 13 17 17 F 1.39900 * 109.46715 * 179.70985 * 16 15 14 18 18 F 1.39897 * 109.47068 * 299.70895 * 16 15 14 19 19 F 1.39895 * 109.47042 * 59.71205 * 16 15 14 20 20 C 1.39867 * 107.92409 * 359.60636 * 15 14 13 21 21 N 1.30836 * 108.20249 * 0.24808 * 20 15 14 22 22 H 1.09003 * 109.47237 * 59.99583 * 1 2 3 23 23 H 1.08994 * 109.47563 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.47418 * 299.99885 * 1 2 3 25 25 H 1.08999 * 109.47134 * 185.00133 * 4 2 1 26 26 H 1.09003 * 109.46931 * 304.99837 * 4 2 1 27 27 H 0.97004 * 120.00323 * 179.97438 * 8 7 5 28 28 H 1.08001 * 126.12899 * 359.97438 * 14 13 2 29 29 H 1.08001 * 125.89898 * 180.22242 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.6412 0.0573 -2.4766 6 1 1.0805 0.9747 -2.3756 7 6 1.9922 -0.4019 -3.7284 8 7 1.6446 0.2775 -4.7994 9 14 2.9614 -1.9892 -3.9031 10 1 2.0214 -3.1329 -4.0198 11 1 3.8099 -1.9198 -5.1199 12 1 3.8235 -2.1769 -2.7086 13 7 2.0184 -0.6907 1.1960 14 6 1.4429 -1.7591 1.7865 15 6 2.1963 -2.0926 2.8598 16 6 1.9258 -3.2264 3.8151 17 9 2.9262 -3.2613 4.7925 18 9 0.6825 -3.0340 4.4270 19 9 1.9177 -4.4361 3.1126 20 6 3.2739 -1.2030 2.9225 21 7 3.1682 -0.3622 1.9257 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 3.1262 -0.7994 -1.2057 26 1 1.6053 -1.7197 -1.2953 27 1 1.8919 -0.0453 -5.6801 28 1 0.5409 -2.2568 1.4622 29 1 4.0575 -1.2089 3.6656 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709981548.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:55 Heat of formation + Delta-G solvation = -103.043222 kcal Electronic energy + Delta-G solvation = -17975.855668 eV Core-core repulsion = 14484.873102 eV Total energy + Delta-G solvation = -3490.982566 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.99410 -48.52379 -48.48717 -42.47063 -37.29268 -34.60629 -32.18974 -31.69898 -29.36029 -26.95019 -25.28129 -23.37301 -22.08106 -21.08812 -19.52655 -19.35528 -19.02150 -18.78507 -16.87581 -16.70288 -15.95338 -15.77499 -15.39212 -15.33941 -15.10076 -14.94190 -14.70422 -14.66648 -14.65965 -14.08633 -13.83953 -13.44282 -13.26188 -13.04172 -12.76415 -12.22922 -12.06226 -11.86446 -11.78675 -11.49234 -10.82619 -10.63312 -9.99300 -8.34412 -6.39165 0.67295 1.27022 1.30529 1.34866 1.38586 1.43447 1.92599 2.29773 2.92466 3.00757 3.09978 3.58252 3.70186 3.75324 3.98861 4.05846 4.28701 4.44431 4.57541 4.77677 4.85163 5.06686 5.14843 5.24985 5.39919 5.46760 5.86491 6.17537 6.50984 6.67336 7.25519 8.80695 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.032798 B = 0.005789 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.499009 B = 4835.205229 C = 5097.708435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.167 3.833 3 H 0.091 0.909 4 C -0.012 4.012 5 C -0.522 4.522 6 H 0.055 0.945 7 C 0.019 3.981 8 N -0.939 5.939 9 Si 0.936 3.064 10 H -0.261 1.261 11 H -0.284 1.284 12 H -0.263 1.263 13 N -0.351 5.351 14 C 0.126 3.874 15 C -0.361 4.361 16 C 0.557 3.443 17 F -0.176 7.176 18 F -0.181 7.181 19 F -0.185 7.185 20 C 0.090 3.910 21 N -0.324 5.324 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.009 0.991 26 H 0.029 0.971 27 H 0.268 0.732 28 H 0.208 0.792 29 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.991 -7.338 17.066 18.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.067 3.933 3 H 0.109 0.891 4 C -0.050 4.050 5 C -0.560 4.560 6 H 0.073 0.927 7 C -0.180 4.180 8 N -0.579 5.579 9 Si 0.761 3.239 10 H -0.186 1.186 11 H -0.210 1.210 12 H -0.187 1.187 13 N -0.128 5.128 14 C -0.025 4.025 15 C -0.375 4.375 16 C 0.502 3.498 17 F -0.157 7.157 18 F -0.162 7.162 19 F -0.166 7.166 20 C -0.097 4.097 21 N -0.143 5.143 22 H 0.100 0.900 23 H 0.095 0.905 24 H 0.092 0.908 25 H 0.028 0.972 26 H 0.047 0.953 27 H 0.077 0.923 28 H 0.225 0.775 29 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -0.511 -6.219 16.150 17.314 hybrid contribution 0.149 -1.257 -0.142 1.274 sum -0.362 -7.477 16.008 17.672 Atomic orbital electron populations 1.22055 0.90588 1.04051 1.03576 1.21477 0.96376 0.96167 0.79303 0.89110 1.19856 0.96223 0.96501 0.92431 1.21112 1.35631 1.09310 0.89972 0.92690 1.25737 0.96388 1.00222 0.95614 1.70003 1.48055 1.41075 0.98803 0.85869 0.79579 0.80541 0.77908 1.18619 1.21012 1.18712 1.49403 1.18206 1.23020 1.22199 1.22706 0.99043 0.89013 0.91787 1.20152 1.05554 1.06796 1.04969 1.17062 0.73673 0.80552 0.78558 1.93151 1.61413 1.96664 1.64520 1.93194 1.43570 1.95147 1.84335 1.93197 1.96224 1.48264 1.78911 1.24163 0.97842 0.91090 0.96601 1.77495 1.03854 1.25092 1.07876 0.90036 0.90511 0.90760 0.97249 0.95312 0.92278 0.77537 0.76457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.22 8.65 71.98 0.62 -3.59 15 2 C 0.17 5.94 3.35 44.99 0.15 6.09 15 3 H 0.09 3.45 8.14 -2.39 -0.02 3.43 15 4 C -0.01 -0.51 3.84 29.85 0.11 -0.40 15 5 C -0.52 -27.38 8.96 25.60 0.23 -27.15 15 6 H 0.05 3.08 7.30 -2.91 -0.02 3.06 15 7 C 0.02 1.05 5.47 84.66 0.46 1.51 15 8 N -0.94 -55.71 13.96 21.45 0.30 -55.41 15 9 Si 0.94 42.79 27.47 68.60 1.88 44.68 15 10 H -0.26 -11.32 7.11 99.48 0.71 -10.62 15 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 15 12 H -0.26 -11.74 6.54 99.48 0.65 -11.09 15 13 N -0.35 -11.46 3.52 -327.50 -1.15 -12.61 15 14 C 0.13 3.40 10.51 83.54 0.88 4.27 15 15 C -0.36 -9.27 5.52 -20.14 -0.11 -9.38 15 16 C 0.56 12.79 3.49 71.24 0.25 13.04 15 17 F -0.18 -3.86 16.82 44.97 0.76 -3.11 15 18 F -0.18 -4.12 17.30 44.97 0.78 -3.34 15 19 F -0.18 -4.47 17.30 44.97 0.78 -3.69 15 20 C 0.09 2.39 11.45 85.24 0.98 3.36 15 21 N -0.32 -10.83 12.58 -57.03 -0.72 -11.55 15 22 H 0.08 2.70 6.95 -2.39 -0.02 2.68 15 23 H 0.08 1.95 7.16 -2.39 -0.02 1.93 15 24 H 0.07 1.81 8.14 -2.38 -0.02 1.79 15 25 H 0.01 0.43 7.20 -2.39 -0.02 0.42 15 26 H 0.03 1.20 7.57 -2.39 -0.02 1.18 15 27 H 0.27 14.94 8.31 -92.71 -0.77 14.17 15 28 H 0.21 4.25 7.27 -2.91 -0.02 4.23 15 29 H 0.22 4.16 8.00 -2.91 -0.02 4.14 15 Total: -1.00 -61.48 266.97 7.32 -54.16 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: 1.12 Total: 3.12 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 3.57 Total: -12.24 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -1.57 Total: -79.57 kcal Atomic # 9 Polarization: -12.45 SS G_CDS: 2.31 Total: -10.14 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.88 Total: 44.68 kcal Total: -61.48 7.32 -54.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709981548.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.881 kcal (2) G-P(sol) polarization free energy of solvation -61.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds