Wall clock time and date at job start Mon Mar 30 2020 06:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47527 * 2 1 4 4 C 1.53002 * 109.46918 * 120.00126 * 2 1 3 5 5 C 1.50696 * 109.46919 * 294.99716 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47364 * 359.97438 * 9 7 5 11 11 H 1.48508 * 109.46883 * 120.00040 * 9 7 5 12 12 H 1.48497 * 109.46870 * 239.99850 * 9 7 5 13 13 N 1.46504 * 109.47132 * 240.00060 * 2 1 3 14 14 C 1.34947 * 126.03691 * 325.00291 * 13 2 1 15 15 C 1.35314 * 107.74689 * 179.97438 * 14 13 2 16 16 C 1.50697 * 126.03744 * 179.97438 * 15 14 13 17 17 F 1.39902 * 109.47158 * 90.00018 * 16 15 14 18 18 F 1.39906 * 109.47167 * 210.00106 * 16 15 14 19 19 F 1.39898 * 109.47546 * 329.99946 * 16 15 14 20 20 C 1.39864 * 107.92071 * 359.97438 * 15 14 13 21 21 N 1.30846 * 108.20128 * 359.74479 * 20 15 14 22 22 H 1.08994 * 109.47199 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47048 * 300.00084 * 1 2 3 24 24 H 1.09001 * 109.46743 * 59.99815 * 1 2 3 25 25 H 1.09000 * 109.46497 * 174.99981 * 4 2 1 26 26 H 1.08999 * 109.46623 * 55.00045 * 4 2 1 27 27 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 28 28 H 1.08009 * 126.12437 * 359.95827 * 14 13 2 29 29 H 1.07998 * 125.89664 * 179.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0570 2.4765 6 1 1.0807 0.9746 2.3756 7 6 1.9932 -0.4018 3.7283 8 7 2.6815 -1.5157 3.8507 9 14 1.4997 0.5634 5.2496 10 1 0.7433 1.7750 4.8433 11 1 0.6459 -0.2855 6.1189 12 1 2.7181 0.9681 5.9958 13 7 2.0184 -0.6906 -1.1962 14 6 1.4402 -1.7559 -1.7896 15 6 2.1961 -2.0922 -2.8603 16 6 1.9257 -3.2260 -3.8155 17 9 1.1279 -2.7676 -4.8694 18 9 3.1373 -3.7074 -4.3229 19 9 1.2607 -4.2556 -3.1410 20 6 3.2728 -1.2018 -2.9238 21 7 3.1641 -0.3575 -1.9301 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 3.1263 -0.7995 1.2055 26 1 1.6053 -1.7198 1.2950 27 1 2.9380 -2.0168 3.0608 28 1 0.5362 -2.2513 -1.4673 29 1 4.0563 -1.2076 -3.6670 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709981592.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:57 Heat of formation + Delta-G solvation = -93.764146 kcal Electronic energy + Delta-G solvation = -17941.483570 eV Core-core repulsion = 14450.903375 eV Total energy + Delta-G solvation = -3490.580195 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.083 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.94772 -47.48323 -47.44104 -41.23974 -35.83377 -32.89752 -30.98710 -29.94228 -26.98845 -25.69750 -23.78161 -22.18203 -20.91996 -19.90971 -18.31861 -18.08958 -17.97210 -16.97467 -15.75251 -14.86998 -14.64905 -14.31617 -14.27238 -13.90570 -13.86626 -13.71109 -13.64119 -13.62278 -12.96266 -12.69823 -12.39474 -12.03351 -11.82349 -11.45840 -10.96915 -10.70161 -10.44570 -10.40085 -10.23267 -9.35854 -8.93121 -8.64546 -8.51910 -6.55453 -4.28641 1.88099 2.51575 2.53637 3.02360 3.34417 3.37863 3.50049 4.03217 4.18151 4.39844 4.63389 4.83030 4.92261 5.17556 5.25463 5.45208 5.61179 5.69179 5.73893 6.12136 6.26319 6.40789 6.50137 6.91307 7.06427 7.18887 7.72694 7.88480 8.22203 8.64275 9.44532 10.84838 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.041544 B = 0.005018 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.814728 B = 5578.861725 C = 5663.956109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.155 3.845 3 H 0.100 0.900 4 C 0.005 3.995 5 C -0.606 4.606 6 H 0.057 0.943 7 C 0.020 3.980 8 N -0.905 5.905 9 Si 1.076 2.924 10 H -0.288 1.288 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.333 5.333 14 C 0.126 3.874 15 C -0.359 4.359 16 C 0.548 3.452 17 F -0.184 7.184 18 F -0.181 7.181 19 F -0.182 7.182 20 C 0.081 3.919 21 N -0.285 5.285 22 H 0.058 0.942 23 H 0.096 0.904 24 H 0.048 0.952 25 H 0.018 0.982 26 H 0.015 0.985 27 H 0.270 0.730 28 H 0.181 0.819 29 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.646 -1.151 -13.290 13.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.056 3.944 3 H 0.118 0.882 4 C -0.033 4.033 5 C -0.644 4.644 6 H 0.075 0.925 7 C -0.185 4.185 8 N -0.540 5.540 9 Si 0.904 3.096 10 H -0.213 1.213 11 H -0.212 1.212 12 H -0.212 1.212 13 N -0.110 5.110 14 C -0.027 4.027 15 C -0.373 4.373 16 C 0.493 3.507 17 F -0.165 7.165 18 F -0.162 7.162 19 F -0.164 7.164 20 C -0.106 4.106 21 N -0.104 5.104 22 H 0.077 0.923 23 H 0.114 0.886 24 H 0.068 0.932 25 H 0.036 0.964 26 H 0.033 0.967 27 H 0.081 0.919 28 H 0.198 0.802 29 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -3.075 -0.017 -10.909 11.334 hybrid contribution -0.420 -1.023 -2.260 2.516 sum -3.496 -1.040 -13.169 13.665 Atomic orbital electron populations 1.22114 0.93054 1.02747 1.02975 1.21923 0.94620 0.97357 0.80515 0.88155 1.19655 0.96772 0.96020 0.90823 1.21868 1.40317 1.10749 0.91471 0.92491 1.25896 0.94171 0.96970 1.01476 1.70724 1.34732 1.14735 1.33824 0.83433 0.76437 0.74952 0.74759 1.21341 1.21178 1.21179 1.49616 1.17597 1.22023 1.21763 1.22202 0.98439 0.90051 0.92018 1.19966 1.05622 1.06696 1.05017 1.17302 0.73578 0.81013 0.78821 1.93190 1.74683 1.88878 1.59789 1.93159 1.45426 1.89311 1.88312 1.93172 1.81319 1.61722 1.80170 1.23569 0.97466 0.92232 0.97328 1.77503 1.03346 1.23211 1.06383 0.92266 0.88563 0.93248 0.96372 0.96659 0.91923 0.80161 0.79484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.65 37.16 0.32 -2.09 15 2 C 0.15 2.97 3.35 -67.93 -0.23 2.74 15 3 H 0.10 1.97 8.14 -51.93 -0.42 1.55 15 4 C 0.01 0.12 4.08 -27.88 -0.11 0.01 15 5 C -0.61 -15.77 8.41 -34.44 -0.29 -16.06 15 6 H 0.06 1.42 7.06 -52.49 -0.37 1.05 15 7 C 0.02 0.55 5.46 -17.82 -0.10 0.45 15 8 N -0.91 -26.71 13.65 55.43 0.76 -25.95 15 9 Si 1.08 24.01 29.90 -169.99 -5.08 18.93 15 10 H -0.29 -6.01 7.11 56.52 0.40 -5.60 15 11 H -0.29 -6.26 7.11 56.52 0.40 -5.86 15 12 H -0.29 -6.33 7.11 56.52 0.40 -5.93 15 13 N -0.33 -6.04 3.53 -54.86 -0.19 -6.23 15 14 C 0.13 1.99 10.17 -17.22 -0.18 1.82 15 15 C -0.36 -5.41 5.56 -105.06 -0.58 -5.99 15 16 C 0.55 7.48 3.52 36.00 0.13 7.61 15 17 F -0.18 -2.46 17.30 2.25 0.04 -2.43 15 18 F -0.18 -2.43 17.04 2.25 0.04 -2.39 15 19 F -0.18 -2.54 17.02 2.25 0.04 -2.50 15 20 C 0.08 1.24 11.66 -17.36 -0.20 1.03 15 21 N -0.29 -5.22 12.58 30.62 0.39 -4.83 15 22 H 0.06 0.89 7.15 -51.93 -0.37 0.51 15 23 H 0.10 1.61 6.95 -51.93 -0.36 1.25 15 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 15 25 H 0.02 0.48 8.00 -51.93 -0.42 0.07 15 26 H 0.02 0.38 8.01 -51.93 -0.42 -0.04 15 27 H 0.27 8.02 7.22 -40.82 -0.29 7.72 15 28 H 0.18 2.40 7.26 -52.48 -0.38 2.02 15 29 H 0.19 2.19 8.06 -52.49 -0.42 1.77 15 LS Contribution 269.20 15.07 4.06 4.06 Total: -1.00 -29.19 269.20 -3.88 -33.07 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -2.67 Total: -1.24 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -1.24 Total: -10.48 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.95 Total: -37.02 kcal Atomic # 9 Polarization: -7.43 SS G_CDS: 0.12 Total: -7.32 kcal Atomic # 14 Polarization: 24.01 SS G_CDS: -5.08 Total: 18.93 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.19 -3.88 -33.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709981592.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.699 kcal (2) G-P(sol) polarization free energy of solvation -29.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds