Wall clock time and date at job start Mon Mar 30 2020 06:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47527 * 2 1 4 4 C 1.53002 * 109.46918 * 120.00126 * 2 1 3 5 5 C 1.50696 * 109.46919 * 294.99716 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47364 * 359.97438 * 9 7 5 11 11 H 1.48508 * 109.46883 * 120.00040 * 9 7 5 12 12 H 1.48497 * 109.46870 * 239.99850 * 9 7 5 13 13 N 1.46504 * 109.47132 * 240.00060 * 2 1 3 14 14 C 1.34947 * 126.03691 * 325.00291 * 13 2 1 15 15 C 1.35314 * 107.74689 * 179.97438 * 14 13 2 16 16 C 1.50697 * 126.03744 * 179.97438 * 15 14 13 17 17 F 1.39902 * 109.47158 * 90.00018 * 16 15 14 18 18 F 1.39906 * 109.47167 * 210.00106 * 16 15 14 19 19 F 1.39898 * 109.47546 * 329.99946 * 16 15 14 20 20 C 1.39864 * 107.92071 * 359.97438 * 15 14 13 21 21 N 1.30846 * 108.20128 * 359.74479 * 20 15 14 22 22 H 1.08994 * 109.47199 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47048 * 300.00084 * 1 2 3 24 24 H 1.09001 * 109.46743 * 59.99815 * 1 2 3 25 25 H 1.09000 * 109.46497 * 174.99981 * 4 2 1 26 26 H 1.08999 * 109.46623 * 55.00045 * 4 2 1 27 27 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 28 28 H 1.08009 * 126.12437 * 359.95827 * 14 13 2 29 29 H 1.07998 * 125.89664 * 179.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0570 2.4765 6 1 1.0807 0.9746 2.3756 7 6 1.9932 -0.4018 3.7283 8 7 2.6815 -1.5157 3.8507 9 14 1.4997 0.5634 5.2496 10 1 0.7433 1.7750 4.8433 11 1 0.6459 -0.2855 6.1189 12 1 2.7181 0.9681 5.9958 13 7 2.0184 -0.6906 -1.1962 14 6 1.4402 -1.7559 -1.7896 15 6 2.1961 -2.0922 -2.8603 16 6 1.9257 -3.2260 -3.8155 17 9 1.1279 -2.7676 -4.8694 18 9 3.1373 -3.7074 -4.3229 19 9 1.2607 -4.2556 -3.1410 20 6 3.2728 -1.2018 -2.9238 21 7 3.1641 -0.3575 -1.9301 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 3.1263 -0.7995 1.2055 26 1 1.6053 -1.7198 1.2950 27 1 2.9380 -2.0168 3.0608 28 1 0.5362 -2.2513 -1.4673 29 1 4.0563 -1.2076 -3.6670 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709981592.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:57 Heat of formation + Delta-G solvation = -110.634965 kcal Electronic energy + Delta-G solvation = -17942.215144 eV Core-core repulsion = 14450.903375 eV Total energy + Delta-G solvation = -3491.311768 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.083 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -51.04362 -48.58195 -48.52433 -42.53468 -37.45712 -34.79890 -32.24104 -31.41520 -28.68539 -26.97459 -25.51346 -23.72420 -22.15875 -21.30827 -19.41037 -19.36267 -19.09208 -18.93680 -17.11096 -16.27845 -16.04682 -15.63518 -15.42560 -15.38251 -15.27941 -14.99348 -14.73050 -14.70840 -14.41098 -14.17056 -13.97292 -13.42977 -13.31426 -13.05727 -12.66240 -12.19027 -12.08566 -11.89793 -11.87451 -10.93599 -10.67151 -10.60969 -10.04348 -8.73381 -6.46484 0.60262 1.21290 1.32339 1.54926 1.62993 1.78369 1.86831 2.55085 2.87013 3.04218 3.12290 3.53477 3.62731 3.67933 3.93033 3.99479 4.20740 4.37357 4.50992 4.70764 4.79788 5.02435 5.07826 5.16690 5.34701 5.65259 5.92752 6.10523 6.44235 6.46550 7.36195 8.66869 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.041544 B = 0.005018 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.814728 B = 5578.861725 C = 5663.956109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.166 3.834 3 H 0.092 0.908 4 C 0.012 3.988 5 C -0.607 4.607 6 H 0.069 0.931 7 C -0.036 4.036 8 N -0.938 5.938 9 Si 1.123 2.877 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.286 1.286 13 N -0.352 5.352 14 C 0.124 3.876 15 C -0.360 4.360 16 C 0.558 3.442 17 F -0.179 7.179 18 F -0.177 7.177 19 F -0.183 7.183 20 C 0.090 3.910 21 N -0.325 5.325 22 H 0.068 0.932 23 H 0.089 0.911 24 H 0.076 0.924 25 H -0.021 1.021 26 H 0.000 1.000 27 H 0.254 0.746 28 H 0.204 0.796 29 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.834 -0.618 -14.141 14.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.066 3.934 3 H 0.110 0.890 4 C -0.026 4.026 5 C -0.645 4.645 6 H 0.087 0.913 7 C -0.234 4.234 8 N -0.575 5.575 9 Si 0.944 3.056 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.212 1.212 13 N -0.129 5.129 14 C -0.028 4.028 15 C -0.374 4.374 16 C 0.503 3.497 17 F -0.161 7.161 18 F -0.159 7.159 19 F -0.164 7.164 20 C -0.097 4.097 21 N -0.144 5.144 22 H 0.087 0.913 23 H 0.108 0.892 24 H 0.095 0.905 25 H -0.003 1.003 26 H 0.018 0.982 27 H 0.063 0.937 28 H 0.221 0.779 29 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -4.275 0.515 -11.797 12.558 hybrid contribution -0.002 -1.238 -2.115 2.451 sum -4.277 -0.723 -13.911 14.572 Atomic orbital electron populations 1.22046 0.90260 1.03730 1.03966 1.21567 0.96599 0.96029 0.79213 0.89032 1.19480 0.94212 0.95701 0.93158 1.22283 1.39124 1.10910 0.92148 0.91254 1.27435 0.93595 0.97027 1.05321 1.70871 1.37246 1.16370 1.32971 0.82858 0.76491 0.74703 0.71525 1.18502 1.20496 1.21170 1.49426 1.18298 1.23179 1.21979 1.22677 0.99087 0.89194 0.91843 1.20152 1.05313 1.06904 1.05006 1.17028 0.73676 0.80477 0.78555 1.93202 1.74562 1.88831 1.59487 1.93170 1.45286 1.89215 1.88208 1.93176 1.81331 1.61673 1.80249 1.24164 0.97813 0.90976 0.96721 1.77472 1.04101 1.25097 1.07768 0.91310 0.89227 0.90491 1.00303 0.98159 0.93705 0.77934 0.76281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 8.65 71.98 0.62 -3.65 15 2 C 0.17 6.32 3.35 44.99 0.15 6.47 15 3 H 0.09 3.60 8.14 -2.39 -0.02 3.58 15 4 C 0.01 0.61 4.08 29.85 0.12 0.73 15 5 C -0.61 -31.68 8.41 25.60 0.22 -31.46 15 6 H 0.07 3.39 7.06 -2.91 -0.02 3.37 15 7 C -0.04 -1.98 5.46 84.66 0.46 -1.52 15 8 N -0.94 -56.68 13.65 21.45 0.29 -56.39 15 9 Si 1.12 47.64 29.90 68.60 2.05 49.69 15 10 H -0.26 -9.85 7.11 99.48 0.71 -9.14 15 11 H -0.28 -11.50 7.11 99.48 0.71 -10.79 15 12 H -0.29 -12.05 7.11 99.48 0.71 -11.34 15 13 N -0.35 -12.54 3.53 -327.47 -1.15 -13.70 15 14 C 0.12 3.73 10.17 83.54 0.85 4.58 15 15 C -0.36 -10.16 5.56 -20.15 -0.11 -10.27 15 16 C 0.56 13.96 3.52 71.24 0.25 14.21 15 17 F -0.18 -4.35 17.30 44.97 0.78 -3.58 15 18 F -0.18 -4.36 17.04 44.97 0.77 -3.59 15 19 F -0.18 -4.71 17.02 44.97 0.77 -3.95 15 20 C 0.09 2.60 11.66 85.23 0.99 3.60 15 21 N -0.33 -11.73 12.58 -57.02 -0.72 -12.45 15 22 H 0.07 1.92 7.15 -2.39 -0.02 1.90 15 23 H 0.09 2.82 6.95 -2.39 -0.02 2.81 15 24 H 0.08 1.90 8.14 -2.39 -0.02 1.88 15 25 H -0.02 -1.20 8.00 -2.39 -0.02 -1.22 15 26 H 0.00 0.01 8.01 -2.39 -0.02 -0.01 15 27 H 0.25 15.71 7.22 -92.71 -0.67 15.04 15 28 H 0.20 4.95 7.26 -2.91 -0.02 4.93 15 29 H 0.22 4.59 8.06 -2.91 -0.02 4.57 15 Total: -1.00 -63.32 269.20 7.61 -55.71 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: 1.28 Total: 5.57 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: 3.55 Total: -17.33 kcal Atomic # 7 Polarization: -80.96 SS G_CDS: -1.58 Total: -82.53 kcal Atomic # 9 Polarization: -13.42 SS G_CDS: 2.31 Total: -11.11 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.05 Total: 49.69 kcal Total: -63.32 7.61 -55.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709981592.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.924 kcal (2) G-P(sol) polarization free energy of solvation -63.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds