Wall clock time and date at job start Mon Mar 30 2020 06:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99864 * 2 1 4 4 H 1.48501 * 109.47225 * 270.00406 * 3 2 1 5 5 H 1.48500 * 109.46846 * 30.00223 * 3 2 1 6 6 H 1.48499 * 109.47391 * 150.00010 * 3 2 1 7 7 C 1.37882 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99961 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99941 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47172 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47236 * 180.02562 * 10 9 7 12 12 O 1.45202 * 109.46919 * 180.02562 * 11 10 9 13 13 C 1.34230 * 116.99836 * 180.02562 * 12 11 10 14 14 O 1.20833 * 119.99930 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00262 * 180.27336 * 13 12 11 16 16 C 1.52999 * 115.55008 * 34.13459 * 15 13 12 17 17 F 1.39905 * 109.47378 * 85.58467 * 16 15 13 18 18 F 1.39900 * 109.47445 * 205.58709 * 16 15 13 19 19 C 1.52999 * 117.49966 * 248.46986 * 15 13 12 20 20 C 1.52999 * 117.50397 * 179.80926 * 15 13 12 21 21 H 0.96994 * 120.00196 * 359.97438 * 1 2 3 22 22 H 1.09006 * 109.46783 * 60.00512 * 9 7 2 23 23 H 1.08996 * 109.47326 * 300.00280 * 9 7 2 24 24 H 1.08997 * 109.46515 * 60.00029 * 10 9 7 25 25 H 1.09002 * 109.46973 * 300.01023 * 10 9 7 26 26 H 1.08998 * 109.47242 * 60.00031 * 11 10 9 27 27 H 1.09004 * 109.46797 * 299.99847 * 11 10 9 28 28 H 1.09007 * 109.47110 * 325.59231 * 16 15 13 29 29 H 1.09002 * 117.49846 * 359.97438 * 19 15 13 30 30 H 1.08998 * 117.49972 * 145.01559 * 19 15 13 31 31 H 1.08996 * 117.49694 * 214.97973 * 20 15 13 32 32 H 1.09006 * 117.49530 * 359.97096 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0217 -2.6364 0.0014 11 6 5.5517 -2.6363 0.0014 12 8 6.0357 -4.0053 0.0021 13 6 7.3664 -4.1811 0.0028 14 8 8.1024 -3.2228 0.0023 15 6 7.9425 -5.5736 -0.0026 16 6 7.1399 -6.6168 -0.7826 17 9 7.5098 -6.5770 -2.1313 18 9 7.4018 -7.8897 -0.2646 19 6 8.6715 -6.0415 1.2586 20 6 9.4666 -5.7077 -0.0061 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6796 0.8896 23 1 3.8746 -0.6807 -0.8904 24 1 3.6580 -3.1512 -0.8879 25 1 3.6586 -3.1493 0.8920 26 1 5.9149 -2.1216 0.8909 27 1 5.9149 -2.1233 -0.8891 28 1 6.0757 -6.3991 -0.6913 29 1 8.7347 -5.3419 2.0921 30 1 8.5795 -7.0925 1.5324 31 1 9.8974 -6.5392 -0.5638 32 1 10.0527 -4.7886 -0.0049 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830013257.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:51 Heat of formation + Delta-G solvation = -194.227807 kcal Electronic energy + Delta-G solvation = -17807.891096 eV Core-core repulsion = 14404.122024 eV Total energy + Delta-G solvation = -3403.769072 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.08683 -48.07388 -41.83975 -38.71908 -37.33276 -35.97279 -33.89478 -29.88100 -28.63947 -25.73015 -24.11944 -23.66864 -22.12294 -21.11370 -19.46854 -19.05970 -18.52183 -18.26584 -17.83935 -17.48004 -16.66546 -16.30508 -15.71265 -15.35661 -14.89557 -14.80676 -14.67804 -14.42164 -14.04249 -13.89770 -13.68040 -12.92267 -12.88477 -12.63323 -12.54446 -12.21052 -12.08548 -11.89220 -11.78180 -11.63491 -11.53639 -11.43386 -11.36941 -10.78129 -8.30731 -6.35915 0.80306 1.33771 1.36862 1.38411 1.49675 2.23919 2.35167 2.58479 3.03520 3.04668 3.15830 3.45386 3.51293 3.96289 3.96799 4.03726 4.07160 4.33320 4.41255 4.55541 4.69860 4.71652 4.78620 4.93873 4.99809 5.22251 5.44752 5.47342 5.61284 6.24787 6.47368 6.72218 7.28831 8.85842 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.039998 B = 0.004177 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.864013 B = 6701.086382 C = 7061.087182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.245 1.245 7 C -0.535 4.535 8 H 0.036 0.964 9 C -0.010 4.010 10 C -0.093 4.093 11 C 0.075 3.925 12 O -0.354 6.354 13 C 0.503 3.497 14 O -0.524 6.524 15 C -0.233 4.233 16 C 0.308 3.692 17 F -0.207 7.207 18 F -0.194 7.194 19 C -0.105 4.105 20 C -0.119 4.119 21 H 0.267 0.733 22 H 0.027 0.973 23 H 0.024 0.976 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.141 0.859 29 H 0.118 0.882 30 H 0.142 0.858 31 H 0.131 0.869 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.076 -13.330 1.306 24.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.772 3.228 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.169 1.169 7 C -0.573 4.573 8 H 0.054 0.946 9 C -0.047 4.047 10 C -0.131 4.131 11 C 0.002 3.998 12 O -0.270 6.270 13 C 0.347 3.653 14 O -0.413 6.413 15 C -0.235 4.235 16 C 0.254 3.746 17 F -0.189 7.189 18 F -0.175 7.175 19 C -0.142 4.142 20 C -0.156 4.156 21 H 0.076 0.924 22 H 0.045 0.955 23 H 0.042 0.958 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.158 0.842 29 H 0.136 0.864 30 H 0.160 0.840 31 H 0.149 0.851 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 20.121 -12.941 1.283 23.958 hybrid contribution -0.394 0.967 -0.253 1.075 sum 19.727 -11.973 1.030 23.099 Atomic orbital electron populations 1.70055 1.08314 1.28272 1.52377 1.25993 0.95599 1.03493 0.94008 0.85677 0.79563 0.78267 0.79275 1.19147 1.20945 1.16861 1.21404 0.91709 0.93373 1.50769 0.94565 1.19454 0.94308 0.93720 0.97259 1.21336 0.90476 0.98459 1.02812 1.23285 0.95288 0.78379 1.02861 1.86422 1.23529 1.33911 1.83167 1.22269 0.80854 0.90474 0.71751 1.90665 1.61101 1.42981 1.46586 1.22121 0.99038 0.91132 1.11184 1.21035 1.00641 0.78377 0.74529 1.92999 1.93812 1.96416 1.35636 1.92977 1.95881 1.42100 1.86508 1.23447 0.95752 1.05135 0.89850 1.23336 0.86536 1.05404 1.00280 0.92391 0.95515 0.95754 0.91708 0.91539 0.90653 0.90929 0.84216 0.86379 0.83980 0.85060 0.86734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.12 13.96 21.45 0.30 -58.82 16 2 C 0.01 0.35 5.47 84.66 0.46 0.82 16 3 Si 0.95 43.51 27.47 68.60 1.88 45.40 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.25 -10.36 6.54 99.48 0.65 -9.70 16 7 C -0.53 -30.33 9.66 25.60 0.25 -30.08 16 8 H 0.04 2.25 7.99 -2.91 -0.02 2.23 16 9 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 10 C -0.09 -3.48 5.53 30.59 0.17 -3.31 16 11 C 0.07 2.37 5.47 71.98 0.39 2.76 16 12 O -0.35 -10.15 9.49 -51.41 -0.49 -10.64 16 13 C 0.50 13.36 7.50 71.23 0.53 13.89 16 14 O -0.52 -16.48 16.01 21.94 0.35 -16.12 16 15 C -0.23 -4.45 2.39 -52.93 -0.13 -4.57 16 16 C 0.31 5.69 5.29 71.98 0.38 6.07 16 17 F -0.21 -4.60 17.30 44.97 0.78 -3.83 16 18 F -0.19 -3.36 15.91 44.97 0.72 -2.64 16 19 C -0.11 -1.36 9.63 30.62 0.29 -1.07 16 20 C -0.12 -1.75 9.69 30.62 0.30 -1.45 16 21 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 22 H 0.03 1.17 7.20 -2.38 -0.02 1.15 16 23 H 0.02 1.05 7.57 -2.39 -0.02 1.04 16 24 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 25 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.08 2.30 8.13 -2.39 -0.02 2.28 16 27 H 0.07 2.26 8.13 -2.38 -0.02 2.24 16 28 H 0.14 2.36 7.49 -2.38 -0.02 2.35 16 29 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.14 1.32 7.22 -2.39 -0.02 1.30 16 31 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.11 1.85 7.67 -2.38 -0.02 1.83 16 Total: -1.00 -67.23 287.84 7.38 -59.85 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: 1.07 Total: 4.09 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: 2.77 Total: -17.28 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 0.30 Total: -58.82 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.14 Total: -26.76 kcal Atomic # 9 Polarization: -7.96 SS G_CDS: 1.49 Total: -6.47 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.88 Total: 45.40 kcal Total: -67.23 7.38 -59.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830013257.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.377 kcal (2) G-P(sol) polarization free energy of solvation -67.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds